RNA id: CI01000010_06014142_06037829.mRNA


Basic Information

Item Value
RNA id CI01000010_06014142_06037829.mRNA
length 2750
RNA type mRNA
GC content 0.48
exon number 14
gene id CI01000010_06014142_06037829
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6014142 ~ 6038450 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCACAGATGAAGACACCGTTAAAAGGTACTATGCCAAGTTTGAGGAGAAGTTCTTTCAGACATGCGAAAAGGAGCTCTCTAAGATCAACACATTCTATTCAGTTGCCACTGAAAATCATTCACTCCCTCAGTGCTGCAGGTTTGATGGTCGGACCAAAATAAACTCTAATCGAGTTGCCCAGCCAAAGAAAGCTGGCAAGTCCAAGAAACTGGCTGAGGCGCAGCGGCGATTCGCAACTTTGCAAAATGAGCTGCAGACGTCTCTGGATGCCCAGCGGGAGAGCAACGCTCCAGGGCTGCGCAGTCGCCGCAAAACGGTGTTGCCTTTGTCCAACAAGGAGCGCAACAAACATCGCAACATCAAAGACCTGCAGCTGGCCTTCAGCGAGTTCTACCTCAGCCTCATTCTCCTGCAGAACTACCAGAATCTGAACTTCACTGGATTCCGCAAGATTCTGAAGAAACATGATAAGATTCTGGACACACAGCGTGGAGCCGATTGGCGTGTGGCTCACGTGGAGGTGGCTCCATTCTACACCTGTAAGAAGATCACACAGCTCATCTCTGAGACCGAGGCTCTGGTGACCACAGAGCTGGAAGGAGGTGACCGTCAGAAGGCCATGAAGAGGCTGAGGGTTCCACCTCTTGGAGCAGCGCAGAACATCTGGCCACTGGTGCGCATCTACCGCGGCGGTTTCCTGTTGATTCAGTTTCTCTTCCTCTTGGGGATTAACACTTATGGCTGGAGGCAGGCGGGTGTCAATCATGTGCTGATCTTTGAGCTGAACCCCCGAAATAATCTTTCACATCAGCATCTGTTTGAGGCAAGACACATCATGGAGAAGGAAACTTTACAGAAAATCGCAGGGTTTTTGGGGGTGTTGTGGTGTCTCAGCATCCTTTCCTGTCTGTTTGCGGACTACACTTGGCTCCCTATGCAGGCGAACCCCCTCATCCTCTACGGCTTCATGCTGCTCTTCCTCATCAACCCCTTCAAAACCGCCTACTACAAATCCCGTTTCTGGCTCATCAAACTTCTGTTCCGTGTATTCACCGCCCCGTTCCACCGAGTAGAGTTTGCAGACTTCTGGCTGGCGGATCAACTCAATTCCCTGGTCATTGTGCTCTCAGATCTGGAGTATCTGGTCTGTTACTACAGCATGGAGCTGCAGTGGGGAGATCGTAGGGGATTACTGCCCTATACATATGGAGTTCTTCAGGTTCAGTGGAGTAAATCATGTGAAATGGACCAGGAAATTCAGAGCATCAGCGGCTGTCTAATGGTGCAGAAATGTGTCACACCAGCTCAGGAATACTGGAAAATACTGAGAAAGAAAAAGATGGAAAGTGATGAAAGGTGTAACAGCTACTCTTACGGAGTTCGGGCCATCATCCACTGTCTGCCTGCCTGGCTGCGGTTTGTTCAGTGTCTGCGACGTTACCGTGACACCAGAAGGGCCTTCCCTCACCTGGTGAATGCTGGGAAATACTCAACCACCTTCTTTGTGGTCACATTTGCAGCCCTCTACAGAACTCATAAAGATCAGAAACATGCTGACGCTGAGGTGTTTTTCTACATGCTGATCCTGTCTTCAGTCGTCAGTTCACTCTACACGCTGATCTGGGACCTAAAGATGGACTGGGGTCTTTTCGACCGCAACGCAGGCGAGAATACCTTCTTGAGAGAGGAGATTGTTTACCCACATAAAGCCTACTACTACTCTGCCATTATAGAAGATGTGATGCTGCGCTTCGCCTGGACACTGCAGATCTCTCTGACTTCCATGACTGCCATTCCTTCCATCGAGGACATTGTGGTTACCATTTTAGCTCCTCTGGAAGTGTTCAGACGTTTTGTGTGGAACTTCTTCCGTCTTGAGAATGAGCACCTGAATAACTGCGGTGAGTTTCGAGCGGTGCGAGACATCTCGGTGGCTCCTCTAAACGCTGACGACCAGACGCTGCTGGAGCAGATGATGGACCAGGAGGATGGAGTCCGGAACAGACAGGGCAAAAAGAGCTGGAAGCGGAGCTACAGCCTGTCCTTACGACGACCCCTGCTGTCCTCTCAGTCTAAGAAGGATACTAAGGTGCTCATTGAGGATACGGATGATGAGGCCTTCAGCTGAACCCAGATCTCGCTGTCCCGCCACCTGTCTCGGCTTTCTATTGGTTCCTCACAGAGCTGCCTCAGCACACCTGATCTCAAACACACACAGATACACACATATTCACACACTTTCTCTTCAACACTCCAAAAACAGAGTAGTGGACAGAGTTAAGCACAATAACAGCCATGAGACATATCAGGACACAACAGTGACATCGTACAAACACGGACACACACACACGACGAGATATACACATGCACGGAAAAGCCAAGTGCGGAATTTTCCTCAAGGTACTTTTTTTATTAGACTTTTTAATTTTGTTTCTCTATATTGATACTTTTTTGTACATTTGTTTAGGTTTTTGAATCTATATTGCTGCACATGACTGTTTACAAACTTAAAATAATAACTAGGATCTACAGGGAGGAGAGTTATCATATGAAAGAATAATATAATATCGTACACTGCACGGACTCAAGCCGCACACTATAACTGCAGCGCATTTAGAAGTAACAACAGCTCAGTAGCTGATGTTTGTTATAGTTTTTTCTTTAGTTTTATTTGTTTTTTGAGTTTTCATGACATCAGTGTACGGCCCTGGTGGCACTGTTTGAAAATGCTCAATATTTCCTAACCATA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72262 lncRNA upstream 130491 5882768 ~ 5883651 (+) True G63443
TU72261 lncRNA upstream 132542 5881195 ~ 5881600 (+) True G63442
TU72220 lncRNA upstream 296892 5715716 ~ 5717250 (+) True G63405
TU72217 lncRNA upstream 315677 5695445 ~ 5698465 (+) False G63403
TU72210 lncRNA upstream 320134 5691435 ~ 5694008 (+) True G63399
TU72134 lncRNA downstream 49789 6088239 ~ 6089177 (+) True G63333
TU72128 lncRNA downstream 60968 6099418 ~ 6101358 (+) True CI01000010_06093805_06101291
TU72119 lncRNA downstream 64407 6105372 ~ 6105686 (+) True G63318
TU72316 lncRNA downstream 121182 6159632 ~ 6159848 (+) True G63497
TU72321 lncRNA downstream 143895 6182345 ~ 6182679 (+) True G63502
CI01000010_05902969_05911426.mRNA mRNA upstream 101977 5902969 ~ 5912165 (+) True CI01000010_05902969_05911426
CI01000010_05859214_05887437.mRNA mRNA upstream 125875 5859214 ~ 5888267 (+) True CI01000010_05859214_05887437
CI01000010_05819188_05855120.mRNA mRNA upstream 158979 5819188 ~ 5855163 (+) True CI01000010_05819188_05855120
CI01000010_05789479_05790006.mRNA mRNA upstream 223938 5788332 ~ 5790204 (+) False CI01000010_05789479_05790006
CI01000010_05523602_05535371.mRNA mRNA upstream 478450 5523516 ~ 5535692 (+) True CI01000010_05523602_05535371
CI01000010_06043120_06058750.mRNA mRNA downstream 4670 6043120 ~ 6058823 (+) True CI01000010_06043120_06058750
CI01000010_06062478_06073546.mRNA mRNA downstream 24028 6062478 ~ 6073792 (+) True CI01000010_06062478_06073546
CI01000010_06074779_06076207.mRNA mRNA downstream 35977 6074427 ~ 6076280 (+) True CI01000010_06074779_06076207
CI01000010_06080203_06081963.mRNA mRNA downstream 41753 6080203 ~ 6082279 (+) True CI01000010_06080203_06081963
CI01000010_06093805_06101291.mRNA mRNA downstream 55355 6093805 ~ 6101291 (+) False CI01000010_06093805_06101291
TU72237 other upstream 224155 5756953 ~ 5757934 (+) True G63420
TU72219 other upstream 296892 5707971 ~ 5717250 (+) False G63405
TU72215 other upstream 307057 5695445 ~ 5707085 (+) False G63403
TU72351 other downstream 336108 6374558 ~ 6374667 (+) False G63524
TU72352 other downstream 336108 6374558 ~ 6374667 (+) True G63524
TU72350 other downstream 347392 6424211 ~ 6424688 (+) True CI01000010_06399511_06426913
TU72416 other downstream 547478 6585928 ~ 6617806 (+) True G63572
TU74882 other downstream 2994097 9032547 ~ 9038005 (+) False G65803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070935 True 2435 mRNA 0.52 15 NC_007119.7 14244476 ~ 14375890 (-)