RNA id: TCONS_00072020


Basic Information

Item Value
RNA id TCONS_00072020
length 419
lncRNA type intronic
GC content 0.45
exon number 6
gene id XLOC_036335
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17659597 ~ 17661194 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gactcgactcgaccgcaaacaagcgccatcaccacagacaacgccgtcgtctcttcacccaacggattcatcctcgtacaagactgaagtaaaggtgaaatgactataacgttaaggtgtacctgataatagctaaagtgtgagccactgatgttgaaacactgatgctaccaatcaaccctctcttgattattaaagtcttattccttggagggtcgagtggtcatgggacctcacctggatttcacaactgactttggatctggtctgaaactgaagtatgctgaagatgccttttgcactctggaatttaagggccgtgttgcagacacaaattgtttgtctgtgctggagaccagaggggaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcag

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072434 lncRNA downstream 1045934 16609622 ~ 16613663 (-) False XLOC_036322
TCONS_00072433 lncRNA downstream 1045967 16609622 ~ 16613630 (-) False XLOC_036322
TCONS_00072432 lncRNA downstream 1045968 16609622 ~ 16613629 (-) False XLOC_036322
TCONS_00072015 lncRNA downstream 1045980 16609622 ~ 16613617 (-) False XLOC_036322
TCONS_00070970 lncRNA downstream 1045980 16609622 ~ 16613617 (-) False XLOC_036322
TCONS_00072021 lncRNA upstream 116666 17777860 ~ 17782923 (-) False XLOC_036336
TCONS_00071010 lncRNA upstream 116666 17777860 ~ 17784911 (-) False XLOC_036336
TCONS_00072435 lncRNA upstream 121263 17782457 ~ 17784706 (-) True XLOC_036336
TCONS_00071012 lncRNA upstream 126114 17787308 ~ 17790863 (-) False XLOC_036337
TCONS_00071011 lncRNA upstream 126122 17787316 ~ 17790965 (-) False XLOC_036337
TCONS_00071007 mRNA downstream 143149 17395929 ~ 17516448 (-) True XLOC_036333
TCONS_00071005 mRNA downstream 475115 17174796 ~ 17184482 (-) True XLOC_036331
TCONS_00071004 mRNA downstream 491767 17163494 ~ 17167830 (-) True XLOC_036330
TCONS_00071003 mRNA downstream 491778 17163494 ~ 17167819 (-) False XLOC_036330
TCONS_00071001 mRNA downstream 592233 17055292 ~ 17067364 (-) False XLOC_036329
TCONS_00071013 mRNA upstream 126116 17787310 ~ 17790916 (-) False XLOC_036337
TCONS_00071014 mRNA upstream 139186 17800380 ~ 17822259 (-) True XLOC_036338
TCONS_00071015 mRNA upstream 260235 17921429 ~ 17926814 (-) False XLOC_036339
TCONS_00071016 mRNA upstream 260599 17921793 ~ 17926620 (-) True XLOC_036339
TCONS_00071017 mRNA upstream 297225 17958419 ~ 17980317 (-) True XLOC_036340
TCONS_00071006 other downstream 407243 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00070990 other downstream 993951 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00070989 other downstream 1002511 16632735 ~ 16657086 (-) False XLOC_036324
TCONS_00070985 other downstream 1046488 16613029 ~ 16613109 (-) True XLOC_036322
TCONS_00070984 other downstream 1046716 16612808 ~ 16612881 (-) False XLOC_036322
TCONS_00071054 other upstream 853846 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 861887 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071065 other upstream 923499 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071074 other upstream 1553531 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071076 other upstream 1553635 19214829 ~ 19216657 (-) True XLOC_036363

Expression Profile

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