RNA id: TCONS_00072434


Basic Information

Item Value
RNA id TCONS_00072434
length 1968
lncRNA type inter_gene
GC content 0.38
exon number 9
gene id XLOC_036322
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16609622 ~ 16613663 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTACAGTAATAGAACTGTTGAAACGAATAAGTATTAACATTGCTTTTACCGTTTATCTGCATTCAAGTAACATGTCAGTAAGCATTACAAGCAATGATTACAAGCCTTACAACGCCACCGCGTGTCCACCTACCATATAAGCAGTGGAATTTCCCAGAAACCTTTGCGCTGGAGAAGTATAAAAGGCAAAGCGATTCCCTCATTCGGTCTCATTCTTCCGCGGTGATCCTCTGAGTAGCCAGgtCGAGTCTTTCAATTATCTTAGGCTAATGTGGAACAGCAGATCCTGAGTCTcaagtgttaaaaataaacacCAGGACTCTGCTGTTGGTCTGAATCATCTCCAAGGGTCATGTGCTCTGCAGTTCAACTTGAAGGTTGCCTAAAAAGGTGGATCAAGCTGTATGGAGATGGCGTCAGTTGACTTGAGgtTCCCCAAGAAGATTGAAAATGTATGAAGACTCCAGCTGATATGGTAAACAAATTGTTGTCTTTAAGTGAGAAGTTAACTTTTAATTGTGTAGTATCTCAATGTTTTAGTAAAATTGTAATGCAATGGTGCCCTTTTTTCCAAACTTGACTTTTATAACCTAAATTCTATAACGCCACCCCTAATTGTGATGCAAATGATGACTGCATAGTTCAGCAGAATTTCCATGTAGAACACAGAGCAATGTCTTTCGCTCCTAGCTGATGCATCACCACAGTCCTATTTCAATAATGCTCCACTCATTGCCCATGCTCACTTGTTGTTTCTCATTGCAGCAAGATGTCTGCATGTGGCCAATCGTTTCAGATTTTCTGACTTAAAATGGAGATGAATGACCCGTCATTAAAGTAGTCTTCATGGTGAGTGCACATTTAAAGTGTTGTAACCGAAGCAAAAGTGGTCTCAAGCTGATGAGTGTGAATCAGGTCTCTGATCTCATTGAGGACATGGAAGCATTTCTGATTTAAGACTGATTAGAAGTGAGCTTTACCACCTCAAGCTAGGTAGATTTTAATGGGTTGAATCTTGTTTTAGGACTCCCATCCAGTATCTTCATGACTGCCATCCTTGTAAGTATTGCTCTTTGTAGTGGAGTCCTTCAGATCTTGACTAGTGTGATGAATCTGATGTCCACTGACTTAAGCCATGGAGGATGGATATTAGCTCTGTCTGATCTGGTCCCGTCTAAATTCTGAGCCTCATTGTGAATGTTTTGTTCTAACAGGTGTCTTGTTGACAGGTACAGTGGCCAGCTCTCCATAGTGCAATATGAAGAATGTTACTTGGAGGTTTGTTCACACctttttattctgttttctttAAGTTTTGGGTTTTGTGATGCTCTACAAATGTCTGACCTGAATGCACAGTGTGGATTTATCTTTGACTGAAACTCAAGCCCTGGACTGGGCTCAATGGTTGACTTTGACCAActtgccaatttttttttttctcttttcttaagGTGTCCAAAGGGCTTCAGCCTCTGCAGTTTTGAAAAGGGTATGGTTTTCCCATGTTTGTGTTCAGTGTCTTGTAACCTGTGATGAAATGATTCTGCCAAATGAATCTAATGATTATACCCCAACCGTTCCATATTTCTGAGGTTAACTTAGACTTACTTAAAACCTTGAAGTTTTATACATTGTTGTAAATCTCTCCCTTTTTCCTTGCAGAATGAAGTTGTGTGCATCTGCTTGACTGAGGATTTTTTTCAatggaaatgtgttttttttttttatgactttaATAAATTGCTATTAATCTGAAGTTGGTGTGTGAGTTAATCTGCATTAAGTGTGGTATCTTTCAATGTATTGCACGGATAGTTGCAAGTATGATTTAAATAGTTAATGTAAACTCTTGagtggattttattttttatttttttctcaagaccataaaccacacacacacactgttcccTCAAGACCATaaaccttttatatatatatatatatatatattagagtgtgt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048732 gland development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0061053 somite development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072413 lncRNA downstream 25010 16566548 ~ 16584612 (-) True XLOC_036318
TCONS_00072416 lncRNA downstream 31872 16570519 ~ 16577750 (-) True XLOC_036319
TCONS_00072415 lncRNA downstream 31875 16570519 ~ 16577747 (-) False XLOC_036319
TCONS_00072414 lncRNA downstream 31880 16570519 ~ 16577742 (-) False XLOC_036319
TCONS_00072412 lncRNA downstream 340675 16263930 ~ 16268947 (-) True XLOC_036313
TCONS_00072020 lncRNA upstream 1045934 17659597 ~ 17661194 (-) False XLOC_036335
TCONS_00071009 lncRNA upstream 1046522 17660185 ~ 17661172 (-) True XLOC_036335
TCONS_00072021 lncRNA upstream 1164197 17777860 ~ 17782923 (-) False XLOC_036336
TCONS_00071010 lncRNA upstream 1164197 17777860 ~ 17784911 (-) False XLOC_036336
TCONS_00072435 lncRNA upstream 1168794 17782457 ~ 17784706 (-) True XLOC_036336
TCONS_00070968 mRNA downstream 618 16597139 ~ 16609004 (-) True XLOC_036321
TCONS_00070967 mRNA downstream 17131 16582339 ~ 16592491 (-) True XLOC_036320
TCONS_00070965 mRNA downstream 50381 16519212 ~ 16559241 (-) True XLOC_036316
TCONS_00070964 mRNA downstream 50441 16514830 ~ 16559181 (-) False XLOC_036316
TCONS_00070963 mRNA downstream 94495 16486296 ~ 16515127 (-) False XLOC_036316
TCONS_00070986 mRNA upstream 2135 16615798 ~ 16674584 (-) False XLOC_036324
TCONS_00070987 mRNA upstream 3191 16616854 ~ 16675464 (-) False XLOC_036324
TCONS_00070988 mRNA upstream 16819 16630482 ~ 16650595 (-) False XLOC_036324
TCONS_00070991 mRNA upstream 40156 16653819 ~ 16674006 (-) True XLOC_036324
TCONS_00070992 mRNA upstream 74707 16688370 ~ 16697912 (-) False XLOC_036325
TCONS_00070966 other downstream 43143 16565837 ~ 16566479 (-) True XLOC_036317
TCONS_00070956 other downstream 693295 15916210 ~ 15916327 (-) True XLOC_036309
TCONS_00070954 other downstream 976775 15632732 ~ 15632847 (-) True XLOC_036307
TCONS_00070951 other downstream 1304099 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070936 other downstream 2157839 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070989 other upstream 19072 16632735 ~ 16657086 (-) False XLOC_036324
TCONS_00070990 other upstream 25468 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00071006 other upstream 638576 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00071054 other upstream 1901377 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 1909418 18523081 ~ 18537866 (-) False XLOC_036353

Expression Profile

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