RNA id: TCONS_00070966


Basic Information

Item Value
RNA id TCONS_00070966
length 418
RNA type unprocessed_pseudogene
GC content 0.44
exon number 3
gene id XLOC_036317
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16565837 ~ 16566479 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGAGTGGAAACCCCGCCAGATCGACAATTCTGCTCACAAGGGGAAATGGGTGCACCCTGAGATTGATAACCCAGAATACACTGCTGACAGCGAGATCTATAAATACGACAGCATCGGAGTGATCGGACTTGTGGCagGTGAAGTCTGGCACAATTTTCGACAACTTCCTAATTACCAACGACCCCAAGTTGGCAGAAGAGGTCGGCACTGAGACTTGGGGAGCcacaaaagatgctgaaaagaaaatgaaggaaagcCAAGAAGAGGAAAATAGAAAGAAACATGATGAAGAGGAAAAGTCAAGAAAGGAGGAGGCAAAGAAGGAAGAAAAAGGagaggaaaaagaagaagaagatgaagagGAAGAACAAGACGAGGACGAGAAAGAGGAAACTGACTCTAAACTTAAATACGAGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141816

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072412 lncRNA downstream 296890 16263930 ~ 16268947 (-) True XLOC_036313
TCONS_00072411 lncRNA downstream 311176 16218254 ~ 16254661 (-) True XLOC_036311
TCONS_00070957 lncRNA downstream 501427 16062172 ~ 16064410 (-) True XLOC_036310
TCONS_00072410 lncRNA downstream 1314368 15251183 ~ 15251469 (-) True XLOC_036303
TCONS_00072409 lncRNA downstream 1484172 15078036 ~ 15081665 (-) True XLOC_036301
TCONS_00072413 lncRNA upstream 69 16566548 ~ 16584612 (-) True XLOC_036318
TCONS_00072414 lncRNA upstream 4040 16570519 ~ 16577742 (-) False XLOC_036319
TCONS_00072415 lncRNA upstream 4040 16570519 ~ 16577747 (-) False XLOC_036319
TCONS_00072416 lncRNA upstream 4040 16570519 ~ 16577750 (-) True XLOC_036319
TCONS_00072417 lncRNA upstream 43143 16609622 ~ 16612691 (-) False XLOC_036322
TCONS_00070965 mRNA downstream 6596 16519212 ~ 16559241 (-) True XLOC_036316
TCONS_00070964 mRNA downstream 6656 16514830 ~ 16559181 (-) False XLOC_036316
TCONS_00070961 mRNA downstream 50710 16470358 ~ 16515127 (-) False XLOC_036316
TCONS_00070963 mRNA downstream 50710 16486296 ~ 16515127 (-) False XLOC_036316
TCONS_00070962 mRNA downstream 66329 16470992 ~ 16499508 (-) False XLOC_036316
TCONS_00070967 mRNA upstream 15860 16582339 ~ 16592491 (-) True XLOC_036320
TCONS_00070968 mRNA upstream 30660 16597139 ~ 16609004 (-) True XLOC_036321
TCONS_00070986 mRNA upstream 49319 16615798 ~ 16674584 (-) False XLOC_036324
TCONS_00070987 mRNA upstream 50375 16616854 ~ 16675464 (-) False XLOC_036324
TCONS_00070988 mRNA upstream 64003 16630482 ~ 16650595 (-) False XLOC_036324
TCONS_00070956 other downstream 649510 15916210 ~ 15916327 (-) True XLOC_036309
TCONS_00070954 other downstream 932990 15632732 ~ 15632847 (-) True XLOC_036307
TCONS_00070951 other downstream 1260314 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070936 other downstream 2114054 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070922 other downstream 2471321 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070975 other upstream 43769 16610248 ~ 16610319 (-) False XLOC_036322
TCONS_00070978 other upstream 44635 16611114 ~ 16611194 (-) False XLOC_036322
TCONS_00070980 other upstream 44848 16611327 ~ 16611411 (-) False XLOC_036322
TCONS_00070982 other upstream 45187 16611666 ~ 16611747 (-) False XLOC_036322
TCONS_00070983 other upstream 45456 16611935 ~ 16612017 (-) True XLOC_036323

Expression Profile

//