RNA id: TCONS_00070964


Basic Information

Item Value
RNA id TCONS_00070964
length 7979
RNA type mRNA
GC content 0.42
exon number 25
gene id XLOC_036316
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16470358 ~ 16559241 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGCCAGTCTCTCCCTGACTCAGCTTTCAAGTGGGAATCCTGTCTATGAGAAGTATTATCGGCAGGTAGATCCGTCCAGCAGCGGGCATGTAGGAGCTGGTGATGCAGCCTTGTTTTTAAAGAGATCTGGCCTTGCAGACCTGGTCCTTGGCAAGATATGGGACTTGGCAGATTCCGAACGCAAAGGCTCGCTAAACAAGCAGCAATTTTTTGTTGCCCTCCGTTTGGTGGCGTGTGCTCAGAATGGACTTGAAGTTGCTTATAAGAGCCTGAACACTGCCGTCCCTCCCCCAAAGTTTCACGACACTAGCAGTCCTCTTCAGTTTGGCTCTGTGCCTGCCGACACCCCATGGGTAGTCAAGGCAGAGGAGAAGGTGAAATTCGATGCCATCTTTGACAGCCTCTCTCCAGTGGGTGGCATGCTCACGGGCGATAAGGTCAAACCAGTGCTCCTCAACTCTAAACTCCCAGTGGATGTTCTTGGCAGGGTTTGGgagctcagtgacattgacagaGATGGCATGCTGGACAAAGATGAGTTTGCTGTGgcCATGTATTTAGTATACAGAGCCCTGGAGTCTGAGATGGTTCCCATGTCTCTCCCAGCCGCTCTGATTCCACCATCAAAACGGAAACCAGCATCTAGTCCTCCTGTGATGCCCCTTCTACCATCACCAGCACAGCATAAAGAGAGAAACTCGGCCCACTCTGGGTCTAAAACACTGCCAGCAAAAGCAACACCATCACAGtGGGTGGTATCTCCAGCAGATAAAGCCAAATACGATGACTTATTCGCCAAGACAGACACTGACATGGATGGTTTGGTATCTGGTGCTGAAGTCCGAGATATATTTCTAAAGACTGGTTTGCCATCAGCAACTTTGGCCCGTATTTGGGAACTGTGTGATATAGGAGATGTCGGAAAGCTGACCCGAGATCAGTTTGCACTGGCTCTATATCTTATCAATCAGAAGCTGTCAAAGGGAATTGAGCCACCTCAGACACTCTCTCCAGAAATGATTCCTCCTCCTGATAGACTGGCACGACAGAACAATGCTGTCACACTGCAGGCTGCAGATTTCTCCGCAATAAAAGAGTTGGACTCACTTACTAATGAAATCATGGACCTGCAGAAGGAGAAGAGCGTGGTGGAGCAGGACATCAAAGACAGGGAGGAAACTATTCGACAAAGGACCAGCGAAGTCCAGGACCTGCAGGAGGAGGTTCAGAAGGGCTCAGATGAGCTGGGCCGCCTGCAGGCCGAGCGGCAGGAAGTGCAGGAGAAGCTAGAGAGGCTGGATGAGCAGAAACGCTCGCTAGAGGAGCAGCTCACGCTTATTCAACAGCAATGCAGCCAGGAGAGCCAACTGATCCAGTCGTTGCAGGTGCAGCACTCTGAGCAGGAGCAGAGAATCAGTGACTATGAGGAGGAGTTGACCAGAGCCAGAGAAGAGCTGCTCCATCTGCAGGAGGAGACGCGTCAGCTGGGAGAGAAGGTTCAGTCTGCTCGAGCTCAACTCTGCCCTCTAGAGGATGCCGTCAAAGAATCCCACACGCAGATTGTTCAGGAACAGGAGCGTTTGTCTGAGCTTAAAATGGAGGAGAGAGAGGTGACTGCACGGCTTACTTGGAAAATCCTGGAGGAGCCGGTACTAGTCAACGGAGCGGCGCCCTCCATTGAGCATCCAGAGCCATTGCAGTGGCCTCAACCTACAGCACAGCCACCAGAGACAACCAAAGAAGACAAAGTGCAGGATGAAGAGGAGCAGTCATCCACAGATGAGCCACAAGAGCTTAAGGTCACAGAGGAGGAGCCTGGGTCTGAGGCCGAGGAGCCGTCCAGCAGCCCAGAGCAACAGGAGAGCAAACCTGAACTCTACAGCTATGATCTTTACAACAGTGCCTTCTCCACCATCAGCTCCACCTCTGTCAACTGGCCTCAGGGGAACACGGAAAACACAACACAAGAGGCAGAGGTGGATGAGGAGAGGGAAAACACAGAAGAGCGTCCTGCCACCAGCACACCAAAGGCAGAGACTGTGGAGCCAGAGAAGAGAGAAACTGCTCAGCCAGACACAGAGCCACCCAGCAACCCACCTAGCGGCCCTGGCCTTGACTTCTTCCAGTCTGACCCTTTCACTGACAGTGATCCATTCACTGAAGATCCTTTTGCAAAAGTTGACATTTCAGATCCTTTCGGCGGGGATCCTTTTAAAGGCACAGACCCATTTGCAGCAGACAACTTTTTCAAGCAGTCTTCTGGCAGCTTCCCTTCAAGAGATCCTTTCAGCTCCTCTGACCCATTCAATACCACAGGCCCAAAAGAGCCTGATCTATTCACATCCAAGACCACCAATGCAGTCACTCCAGACCCATTTGCTTCTAGTAGTGGTAACCTCCAGGACACTGATCCATTTGGATCCAAAATGGACGCACTGGCAGACTCTGATCCGTTCAGTTCGTCTGGCACAGGACCCGACCCGTTTGGAGGCTCAGATGTGGTTGCGagAGATGGACCAGCATCAGCCAATGATCCTTTTGCTCCTGGAGGAACTACAGTTGTCGCCAACTCAGACCCAGATAAAACAGACCCTTTTGCTGCAGTATTTGGCAATGAGACTTTTGGCGGAGGTTTTGCAGACTTCAGCAGCTTAGCAAAGTCTAATGGCAATGATCCATTTGACTCCAGTACAAACAAGAATTTATTCAAGGAGGACACCCAGTCAGATGTACCGCCAGCATTACCACCCAAAACAGGAACCCCAACCAGACCTCCACCTCCACCCCCAGGTAAGCGGTCCAACATCCACCGATCGGAGTCGTCCGAGTCATTTCACCGCCGCGGTCTGTTCAAGGCCCAGGGATCAGCAGAGTTCTCCTCCCTTCCCGCTAAAGACTCGGTACCAGACCCCTTCGCCCCTTCCTCACCCCACCAAGCCCCGTGCGACCCCAACCGATTCGCCAGCTTTGACAAATATCCCACCGAGGAGGACATGATAGAGTGGGCCAAGCGGGAGAGTGAGAGAGAAGAGCGGGAGCGCGTGGCCCGTCTCACCCAGCAGGAGCAGGAGGATCTGGAGCTGGCCATCGCCCTGAGTAAATCTGAGCTCTCCTGACCCAAGCGGGACACCACTCCCAAGACCTGAGCCACGTCAACACGGAGGAAAGAGCTGGAACAACCACCAATAGCACAGTCCTTATACTTTCATCTCCAGCTACGTGAATAATCATCCCTCCGAGTTCTTCAGTTTTCCGGATATGGGCTGGATGAAAGTATGAAGGTCAAGTCGAGACGGAGAAAAAAGGTAACAGACTCACTTTAGCCTATGGCTTGAATACGTTGGTGTGACTCCTATGTTTTTAAATAAGACGCCTCAGATCAAAAGACTTCCAGTAATCTATCGCTTTCTATTTAGATCATTTAATTCTCGGTTCAATTGAACAAGTCTATTCCTCATTTATTTGAAGTATATTATATGGTTATTATCAATGCAGTGAATGTATTTAGTTCTGTGACGAAAGGTGTAACAACGAGTGCCGTTCTCAATTTCTTTTGGCTAATATTAAACGCATTTGTCCGAAGTTTACAGGCAGACAAGCTGAGCAGCTTCGTTCACTTTTTTCCCCACAGACACTAGAGGTTTTTATTGCGGGCATGTCTGTCCTCTCTCAGGAACATATCCTACATGCTATAAAAACCTCACATCTGCCACTTGACCTGTGACTTTCAGTGGTAAATGAGGTGCTTGGAACATTTTAATGGAGCTGAATTTCTACCCTACTAAATGAGAACATTAATGACATCTAGAAACGAACAAAAGTTTGATCTTTTATAATCTTTACACCCTTTCTTTACTCCAACTCAATTATTGAAGAATCAAAATCATGACAAACTTCTAGAGTTGTTTTTTTGACGTCGCAAATTTATAAATATCTgttataaataatgaaattgtacatatttatgaattgtttgtCAGTAAACTTGTACTACGTGTGTATTCATATCCTAAACATCATCtattttatatatgaataaaaacaaacaatgcagAATACATGAATACAGAAGTATTCATTGAAACAATTATCCCTTTGTCTTGTTTCTGATGTGAAGTGCCGAAGCAATATGGTTAAAGgtgatttaaaaatgtgattgtGGCACACAATATTGAACAAATCCAGTTCCAGAAATtggattttaaatgaaataaaaaatcaagCCATTTTTAAGCTGGCTTTAATATCTTTTATAGTGCCTAATTGTTCATCCTTGCCTTGGCGAGAGAAAATCAGTGACTCCAAAACAACAATTGAATCTTTTTAAGTAGTTTCATAGCATTACAGTCAGTCTTTTGGTCActggaattttaaaaatgaaaaatgagcCGGTTTCTATTGTCGTTTTAAAACGAAATtcaaaagtgatttgatttttagTTTCTATAtcgaataacaaaaaataaaatcactagaAAACAAAAACGAATAAACGCTTGTTTTTTATATTCTGAAACCAGATAGGCATCATTCActgattgtatttatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtatatataatatatatgtttgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatacatgcatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatcatactGTGATTGTGATACTGTGaacaacaacattttattttcagaaacctGTTCAGTATAGCGGTGCAAATAATGCATATATCGTCAAATATGTTTTTccgtttaaaatgtaaaaaaattaataataatatattattattattattgtatataaaaaatagatattattattatatatacaataaACTGGCTTTAATGAGGAAAACATGTCTTAACAAAATCCAGTTAtcataagaaaatattttttataacaatatTAAGTGGGAAAAAATAATAGCCCCTAGTAGGCTAGCCTGTGTGTGGCAGCATTGCATCCCTGAATCATTCGGCCTATCTGGTTTCGGAATATAAAAAACAAGCCTTTAttcgtttttgttttctgttaatcaaaataaaaaatgaaaatcaaatctttttttaatttagcttttttgttttttgtcatgtATTTCAATATTAAGTATCGACTTTTAGAACAAAAATCAAATAACAGCTTGTTTTTCGTTTTTCAATAtccgtttttaaaatgaaaacccaATGACCAAAGGATACACTGACCCATTACACTAAATGCTCCAATGCAATGTTTCCAGTGACGATTCAGAAAGAAGAATCATTGGCTTGGGCAGCTGCTgcccatttattcatttttttttgcacaacattCAGTCACTGCCACATTTCAAAAGACACTTAAAACACACTCTGGGGATCAATCGTGCACAGTTGGTCTCGTTTAATATGCACAAATCGGTATAAGCCTTACAGATGGTGACTTTAGACTTGCTACCAATATTTGTAACCTGTTGTGATCATTTCAGTtgtatataaatatgtagtttCACCAGAAGGTGGAGCCACTGAGGTGACACACATTTTACCTGAAACATAAGAACCTGCTCCTTAGGTTCAGTCTCAAGAGTTTAGGTGGATTCTGGAGTCTTTGGTGACTACAATAGATTTGCTTTGTGAAGGTTTTTCTTTCACACAGACTTTAGTCTGTGCTCCCTTTTAAACGCTGTGTTCAATATTTTCAGTATTGTCTTTTGACATTAATCATTTTCTCTTTGTTCAGAAATCTAGCTTGGCTTTGGACACAGAACTATGTGAACATAATGATAGAAGGGAATCGCAAACCTCGTGTCTAGTCTGGCTTTTCTCACACATTTTAATGCAGCTTATGAATACTCTGAGCACTACTGTTAATAGAGcattaaacaataaaaagatgTTCACACTCCTCATTTCAAACCAATGCTTGGCCTTCTGTTTATGGCTGCTGCTTCTTTATTATCAGCTCTGCTTATTGTTAAAAAGATCTCTTATGCTCTGTCTGTTGTTgatcatgtatgtatgtatgtatgtatgtaagtataaGCTTTGTGTGCCTCTAAAAGAAAACCACTTATATGTTGGCCACTGACTGCCTTTTAAGAACAggctaattgtattttatttttttaatatcccTTATTGGAGGCAACTGTTTAAATATGTTAAGTAACatgtaattaaaacaaaataaatattaaactattaaaacatgGGGGTGTTGTATCAGtgtatgaacattattgaaacaAGATTTGCAAGAATAgttgaatttatttgtttattttgctatGTACTGTTGGGTGTATTTACCTCACAGTCATGACATGACATTCCTTATTTTTCAAGGGCATGTACTGGAAAATGTTAAAAGTGGTACCTGCATTTATTAAATTGCTGAGTTATTTCTACCTGATTTAACCCATGTTACagtgtatattaattatttatttttattattatttacaattgacTATTTCAATATTTACTCtgctgaaaaaaatagcttaaaccagcctaagcttgttttagctggttgaccagactggttttagaggggttttagccatttcaaggctggtttcagccatttccagcaggGTAAATTTTGAAATTGTCGcctataaataaaaacacatctctccaccacacacactctttcattcattcattttcttttcggttttgtccctttaataatctgggatagccacagcagaatgaaccaccaacttatccagcatatgttttacgcagcggatgcctttccagctgcaacccatcacaggaaacatccatacacactcattcacactcatacactacggacaatttagcttacccaattcaacctataccgcatgtctttagacttgtggagggaaacccacgcaaacacggggagaacatgcaaactccacacagaaatgccaactgaccaagctgaggctcgaaccagcgaccttcttgctgtgaggtgaacgtgccaCCCACGGGCACTAGGCTGGGAGAAAAGTCAAAACTAGCTATGTCCAGGTTAAGTCAGGCTGTTCatgctacttttttttctgtattggcTGGAagccagcctgaaaatggccaaaacctctctaaaacctcACTGGTCGACCAGTTAAAATCAGCCACCCTAGGCTGActtgagctgtttttttttagattcagCGTTAATTGACCGATTCAGCCACAACTTTTAGATTTTATGACcgcaacattttaataaaatttaattcgtTTTCGTTGCCTGATACCATAGCAACGACTGGCCGTTGTAGAAAACAATATAAAAGTAtccaaaatgtcatttattttagtaatttttagaattcataatgttttaatatgtttgttgctacagtatatatgtgtttttgtcgcttattttatttttacttgacCTGCGTCAAATTTCTACCCGCGAATGCTGAATCCGGAGGACTTTAAGACCAGGCAAGAGTTGAAGCGCGGCATTCCAGCAATTTTTCGCAAAGGATCTCTTTATTTGTGGAAATGGGTTTCTCCACACCTCCCTGTCAGCCTCACAtgctaaaaaaaaagcacagacaCACACGGCCGCTGTTGCTTCTCCAGCAGAAGTTCAGCGATCACCTGTGGGACTGTAGGCGAGGACAGGTAACGAATGTCCAGGtgactctctctcacactctctacGCTCTTGCTGGATTCACAATCCTCTCTACTCGTCTGGGATGAGTTTCTGGAGACGAAACAAGAAGAATGACGACCAAAAGTAAGTTTGTCATCTTTCATTTTGTAGTCAGGTGGACGGAAATTGTGCGGTAAGTTAGAGACAGGAAGACAATTTGCATAAATGAGAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-264 Predicted to enable calcium ion binding activity. Predicted to be involved in endocytosis and endosomal transport. Predicted to be part of clathrin coat of coated pit. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human EPS15 (epidermal growth factor receptor pathway substrate 15).

Ensembl:

ensembl_id ENSDART00000098692

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072412 lncRNA downstream 245883 16263930 ~ 16268947 (-) True XLOC_036313
TCONS_00072411 lncRNA downstream 260169 16218254 ~ 16254661 (-) True XLOC_036311
TCONS_00070957 lncRNA downstream 450420 16062172 ~ 16064410 (-) True XLOC_036310
TCONS_00072410 lncRNA downstream 1263361 15251183 ~ 15251469 (-) True XLOC_036303
TCONS_00072409 lncRNA downstream 1433165 15078036 ~ 15081665 (-) True XLOC_036301
TCONS_00072413 lncRNA upstream 7367 16566548 ~ 16584612 (-) True XLOC_036318
TCONS_00072414 lncRNA upstream 11338 16570519 ~ 16577742 (-) False XLOC_036319
TCONS_00072415 lncRNA upstream 11338 16570519 ~ 16577747 (-) False XLOC_036319
TCONS_00072416 lncRNA upstream 11338 16570519 ~ 16577750 (-) True XLOC_036319
TCONS_00072417 lncRNA upstream 50441 16609622 ~ 16612691 (-) False XLOC_036322
TCONS_00070962 mRNA downstream 15322 16470992 ~ 16499508 (-) False XLOC_036316
TCONS_00070960 mRNA downstream 50377 16424722 ~ 16464453 (-) True XLOC_036315
TCONS_00070959 mRNA downstream 108390 16274778 ~ 16406440 (-) True XLOC_036314
TCONS_00070958 mRNA downstream 255767 16257220 ~ 16259063 (-) True XLOC_036312
TCONS_00070955 mRNA downstream 523029 15633454 ~ 15991801 (-) True XLOC_036308
TCONS_00070967 mRNA upstream 23158 16582339 ~ 16592491 (-) True XLOC_036320
TCONS_00070968 mRNA upstream 37958 16597139 ~ 16609004 (-) True XLOC_036321
TCONS_00070986 mRNA upstream 56617 16615798 ~ 16674584 (-) False XLOC_036324
TCONS_00070987 mRNA upstream 57673 16616854 ~ 16675464 (-) False XLOC_036324
TCONS_00070988 mRNA upstream 71301 16630482 ~ 16650595 (-) False XLOC_036324
TCONS_00070956 other downstream 598503 15916210 ~ 15916327 (-) True XLOC_036309
TCONS_00070954 other downstream 881983 15632732 ~ 15632847 (-) True XLOC_036307
TCONS_00070951 other downstream 1209307 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070936 other downstream 2063047 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070922 other downstream 2420314 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070966 other upstream 6656 16565837 ~ 16566479 (-) True XLOC_036317
TCONS_00070975 other upstream 51067 16610248 ~ 16610319 (-) False XLOC_036322
TCONS_00070978 other upstream 51933 16611114 ~ 16611194 (-) False XLOC_036322
TCONS_00070980 other upstream 52146 16611327 ~ 16611411 (-) False XLOC_036322
TCONS_00070982 other upstream 52485 16611666 ~ 16611747 (-) False XLOC_036322

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_04696294_04717129.mRNA True 3259 mRNA 0.51 24 CI01000010 4696294 ~ 4717222 (+)