RNA id: TCONS_00070986


Basic Information

Item Value
RNA id TCONS_00070986
length 3278
RNA type mRNA
GC content 0.46
exon number 24
gene id XLOC_036324
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16615798 ~ 16675464 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCAGGCAAAAGTGTAAAAATGGCGTCCATCATGGAGGGGCCGCTGAGCAAATGGACTAACGTCATGAAGGGGTGGCAGTACCGCTGGTTCGTACTGGACTATAACGCCGGGTTGCTGTCATATTATACTTCCAAGGACAAGATGATGCGTGGCTCTAGAAGAGGCTGTGTGCGACTACGGGGAGCTGTGATTGGAATCGATGACGAGGACGACAGCACTTTTACCATTACCGTAGACCAGAAGACTTTCCATTTTCAAGCCCGTGACGCAGATGAGCGGGAAAAGTGGATTCATGCCTTAGAGGGAACAATTCTCCGTCACACCCTTCAGCAGGAGGCAGAAACAGGGTTTGTTCCCAGCGTTCAGGACTTCGACAAGAAGCTAGCCGAAGCAGATGCGTATTTGCAGATCTTGATCGACCAATTAAAACTCTTCGATGAAAAGATAAAAGACTGCAAGGAAGATGAGTCGCGCAGAAAAATCGAGAACCTGAAGGACACCACTTGTaatatggtAGAGTCCATCAAACACTGTATCGTACTGCTACAGATTGCCAAGgATCAAAGTAACGAACAGCAACACGCAAACGGACTGATAAGCACCATAAACCCAGTGGATGGGGTATTCCAGCCTACCCCTCTCAACGCCGCTGTAGTCAGTGCTAGTGCCATGCCAACGCAGACCACTCTACCCACAGATGGAGCTCAGGTGTGTAAAGCGGAGCAGAGGCCTTCTTCTTTACCCGTGGGCCCTGTTGTCACGGTGATGGGCAGCCTTCAGACCCCCACTCCCAACAGCACAGGGAGCGGTCCTTCAGGTCCCAGCAGCAGCGTGACTTCACCCAGTCACATGAACGTACCGGCTCACACTGTTCCCGACTTCTCCTATTCCAGCAGCGAAGACGAGTTTTACGACGCAGATGAGTTTTATCAGAACAGCACGTCACCAAAACACTGCATAGATCCGAGCAGAAGCAGTGCTGTAAACAATGAAGACAGTACAGCCCTGAAACGGCCAGACACCAACGAATCCATCAACTCCTCCATGTCCAACGGCACCACAGATGCAGATCAGTTTGACAGTCATGATGAGAAAGATGATGACGGTGAGGGTGAATCTGTGGAAGAGCATAAAAGTGTCATCATGCATCTGCTGTCTCAAGTGCGCCTGGGCATGGATCTCACCAAGGTAGTCTTGCCAACATTTATCTTGGAGCGGAGGTCGTTGCTGGAAATGTATGCAGATTTCTTTGCACACCCGGATTTGTTTGTAAGCATTGCAGAGCAGCAGGATCCAAGGGACCGCATGGTGCAGGTGGTGAAGTGGTACCTGTCGGCCTTTCACGCTGGTCGGAAAGGATCTGTGGCCAAAAAGCCCTACAACCCCATTCTGGGCGAGGTGTTTTTCTGTCACTGGGACCTGCCCTCCGAAACAGAGGATCCTGCTGCTTCTGAGTGTGTGTCAGACGGGCCAGTACCATGGAGTAGCAAAAACAGTGTGTCGTTTGTGGCAGAGCAGGTTTCTCACCACCCTCCTATATCTGCGTTTTACGCCGAATGTTTCAGCAAAAAAATCCAGTTCAACGCCCACATCTGGACGAAATCGAAGTTCCTGGGAATGTCTATTGGAGTCCATAATATTGGTCAAGGTTGCGTGTCTTGTCTTGAATATGATGAGCATTATATTCTTAATTTTCCCAATGGCTACGGGAGGTCAATCCTCACCGTCCCGTGGGTTGAGTTGGGTGGAGAGTGCAATATTTCCTGTTCCAAATCTGGCTACAGTGCCAATATAGTTTTCCACACCAAACCCTTCTATGGAGGAAAGAAGCACAGGATAACAGCTGAAATATTTGCTCCCAATGATAAGAAGTCATACTGCTCTATAGAGGGAGAGTGGAACGGTGTGATGTATTCAAAATTGGCAACCGGGGAAAATGCAGTATTCATTGACACAAAGAAATTGGGCCTTATTAAGAAGAAGGTGCGGAAATTGGAAGACCAATTGGAATATGAATCGAGATGtTTGTGGAAGGACGTGACGATGAACCTGAAACTGAAGGACATCGACGCAGCGACGGAGGCCAAACACAGGCTGGAGGAGAAACAGAGGGCAGAGGCCAGAGAAAGAAAGGAGAAGGAGATGCAGTGGGAGACCAGACTCTTTCATGAGGACGGCGAATGCTGGGTTTACGACAAGCCTCTCCTGAAGCGACACTGAGCCCCTTTCCAAAAGCAGAGTCTACAAACAGaactctctctcgctctctcttgtCTCTCGCAAAACACTTTTCTTATTCAGCCTTGGAATGACTGACGAATGAACTCTtacagctttgcatttttgaagTTTGAACGAATGAAGACAAGAAAACACGAACTTATCAATCtatacaaaacaaatgaaaaaaaaagactctCCCTGCTCGCTATATTCAACACCTCCACCTCTTCACACCACCCCTTGAGGAAGAAAAACACCACAAAACACAATGAAGACGAGACCTGAAACCCTTTAGCATCCAACAAGCGATCCCAGCGGACGTCTATTTCCCGAGGGGTTGAGGTGTTTTTATCGAACAAAACTGAAAACTACAGCGTTCTGTATCTCAGGGAAGCAGCGGACTGAGGATTGAAGGCTGTATCCTAATGTTCGAAAAGCCTTAATGGTGGAACCACAAAGTAAACACAAGGAGAACTTGGTTCACATACTGCTAGCTAcagctatttatatatatatataaatatatatatagaagataTGATATattcttgttttcattttctttctttaggGCAATAGTAAATACATACTTGACGGCAACCATTCCCTTTATGTTCCTctccaccaccatcatcatcatcatcatcagcctTTATGCAGGTTTATGCTACAAAAAGCCACAATTTGGCATTGACATTATGGGGTTGAAATTTGAGACAATTTTGCCTTGGTTATAATCCATtccagttttttttgtgtgtgtttttgggaaTGATTTGATATGCTCTAGAGCCTCGGgaaggctgttttttttatatatacatatatagaatGCTGCTTGAATGTCCACATAATTTATCAACTTAGTCTAAAGTTGGACTCTCCGGTAGGAAATAATTGTAATGTTGCACAATGAAACGATCCAACAGATTTGTGCTTATACATTTGAGGTTAAGCAACATTATATCACAAATCGCCCCCCTTACAAATCTCTTGTTTCTGTGAAATGTTACGTTTTAATCTGAATAAATATACGTTTCATATAGTGATGTA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061110-103 Predicted to enable sterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Orthologous to human OSBPL9 (oxysterol binding protein like 9).

Ensembl:

ensembl_id ENSDART00000100727

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072434 lncRNA downstream 2135 16609622 ~ 16613663 (-) False XLOC_036322
TCONS_00072433 lncRNA downstream 2168 16609622 ~ 16613630 (-) False XLOC_036322
TCONS_00072432 lncRNA downstream 2169 16609622 ~ 16613629 (-) False XLOC_036322
TCONS_00072015 lncRNA downstream 2181 16609622 ~ 16613617 (-) False XLOC_036322
TCONS_00070970 lncRNA downstream 2181 16609622 ~ 16613617 (-) False XLOC_036322
TCONS_00072020 lncRNA upstream 985013 17659597 ~ 17661194 (-) False XLOC_036335
TCONS_00071009 lncRNA upstream 985601 17660185 ~ 17661172 (-) True XLOC_036335
TCONS_00072021 lncRNA upstream 1103276 17777860 ~ 17782923 (-) False XLOC_036336
TCONS_00071010 lncRNA upstream 1103276 17777860 ~ 17784911 (-) False XLOC_036336
TCONS_00072435 lncRNA upstream 1107873 17782457 ~ 17784706 (-) True XLOC_036336
TCONS_00070968 mRNA downstream 6794 16597139 ~ 16609004 (-) True XLOC_036321
TCONS_00070967 mRNA downstream 23307 16582339 ~ 16592491 (-) True XLOC_036320
TCONS_00070965 mRNA downstream 56557 16519212 ~ 16559241 (-) True XLOC_036316
TCONS_00070964 mRNA downstream 56617 16514830 ~ 16559181 (-) False XLOC_036316
TCONS_00070963 mRNA downstream 100671 16486296 ~ 16515127 (-) False XLOC_036316
TCONS_00070992 mRNA upstream 13786 16688370 ~ 16697912 (-) False XLOC_036325
TCONS_00070993 mRNA upstream 14102 16688686 ~ 16697615 (-) True XLOC_036325
TCONS_00070994 mRNA upstream 27522 16702106 ~ 16712255 (-) False XLOC_036326
TCONS_00070995 mRNA upstream 27557 16702141 ~ 16712111 (-) False XLOC_036326
TCONS_00070996 mRNA upstream 29545 16704129 ~ 16712111 (-) False XLOC_036326
TCONS_00070985 other downstream 2689 16613029 ~ 16613109 (-) True XLOC_036322
TCONS_00070984 other downstream 2917 16612808 ~ 16612881 (-) False XLOC_036322
TCONS_00070983 other downstream 3781 16611935 ~ 16612017 (-) True XLOC_036323
TCONS_00070982 other downstream 4051 16611666 ~ 16611747 (-) False XLOC_036322
TCONS_00070980 other downstream 4387 16611327 ~ 16611411 (-) False XLOC_036322
TCONS_00071006 other upstream 577655 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00071054 other upstream 1840456 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 1848497 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071065 other upstream 1910109 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071074 other upstream 2540141 19214725 ~ 19215684 (-) False XLOC_036363

Expression Profile

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