RNA id: TCONS_00070993


Basic Information

Item Value
RNA id TCONS_00070993
length 1599
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_036325
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16688370 ~ 16697912 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATTCACAGTCTTGAACACCCAGCCGGTGGATATAAGAAAGTCTTTGAGTCGTGTGAAGAGTTAGCGGAGCCCATTCCTGCTCATGTCTCAGGTAAAATCCCAGCATGGCTGTCTGGAAGTCTGCTCCGCATGGGCCCTGGGCTTTTCGAGATTGGAGATGAACCATTTAACCATCTTTTTGATGGCCAGGCTCTCATTCACAAGTTTGACCTGAAGGACGGACGTGTAACCTATCATCGCAAGTTTATCAGAACTGATGCTTATGTGAGAGCCATGACAGAGAAAAGGGTTGTGATTACAGAACTCGGCACCGCTGCATATCCAGATCCATGCAAAAACATCTTTTCCAGGTTTTTCACTTACTTCCAAGGCACTGAGGTTACAGACAACTGTTCTGTAAACATTTACCCCATCGGTGAAGACTTCTATGCCTGCACTGAAACCAACTTCATTACCAAAGTCAATCCTGATACCCTGGAAACAATAAAAAAGGTGGACCTCTGCAATTATCTGTCGGTTAATGGTTTAACAGCACATCCACACATTGAAGCAGACGGTACTGTATATAACATTGGAAACTGCTTTGGGAAGAACATGTCCCTGGCCTACAACATTGTCAAGATCCCGCCACTACAAGAAGAAAAATCTGATCCACTTGCGATGTCAAAGGTTTTGGTCCAGTTTCCAAGCAGTGAAAGGTTCAAACCATCCTACGTTCACagCTTTGGCATGACAGAGAACCATTTTGTGTTTGTTGAAACTCCGGTGAAGATCAATCTGCTGAAATTTCTCACTTCCTGGAGCATCAGAGGGTCAAATTATATGGACTGCTTTGAATCTAATGACAGAATGGGAACATGGTTTCATCTGGCAGCCAAAAATCCCGGCAAATACATCGACCACAAATTCAGAACATCTGCCTTCAATATTTTTCACCACATTAACTGTTTTGAAGACCAAGGCTTTATTGTTGTTGACCTGTGCACATGGAAAGGCCATGAATTTGTGTACAATTATCTATATTTGGCAAATCTGAGGCAAAACTGGGAGGAAGTCAAAAAAGCAGCCCTGAGAGCTCCACAGCCGGAGGTGCGCAGATACGTGCTTCCACTGGACATCCACAGgGAAGAGCAAGGGAAGAACTTGGTTTCTCTTCCATACACCACAGCCACTGCTGTCATGTGCAGTGATGGAACTGTTTGGCTCGAACCCGAGGTTCTTTTCTCTGGACCACGTCAGGCTTTTGAGTTTCCTCAGATAAACTACAGCAAATTCAACGGGAAAGATTACACCTTTGCCTATGGACTCGGACTGAACCACTTTGTTCCAGACCGGATTTGCAAGCTGAATGTGAAAAGTAAAGAAACCTGGATCTGGCAGGAGCCGGACGCCTATCCTTCTGAACCACTGTTTGTACAAAGCCCTGATGCTGAAGATGAAGACGATGGTGTTCTGTTGAGTATTGTAGTGAAACCTGGAGTTTCTCAGAGGCCGGCGTTTCTCCTCATTCTCAAGGCCACTGACCTGACAGAAATAGCACGTGCGGAGGTTGACGTCCTCATTCCTCTTACTCTCCACGGCATCTACAAACCTTAG

Function

GO:

id name namespace
GO:1901827 zeaxanthin biosynthetic process biological_process
GO:0001523 retinoid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0052885 all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity molecular_function
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0050251 retinol isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050410-16 Predicted to enable all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity and retinol isomerase activity. Predicted to be involved in retinoid metabolic process and zeaxanthin biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Is expressed in ectoderm; mandibular arch skeleton; nervous system; neural crest cell; and pectoral fin. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 2; retinitis pigmentosa; retinitis pigmentosa 20; and retinitis pigmentosa 87. Orthologous to human RPE65 (retinoid isomerohydrolase RPE65).

Ensembl:

ensembl_id ENSDART00000187929

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072434 lncRNA downstream 75023 16609622 ~ 16613663 (-) False XLOC_036322
TCONS_00072433 lncRNA downstream 75056 16609622 ~ 16613630 (-) False XLOC_036322
TCONS_00072432 lncRNA downstream 75057 16609622 ~ 16613629 (-) False XLOC_036322
TCONS_00072015 lncRNA downstream 75069 16609622 ~ 16613617 (-) False XLOC_036322
TCONS_00072020 lncRNA upstream 961982 17659597 ~ 17661194 (-) False XLOC_036335
TCONS_00071009 lncRNA upstream 962570 17660185 ~ 17661172 (-) True XLOC_036335
TCONS_00072021 lncRNA upstream 1080245 17777860 ~ 17782923 (-) False XLOC_036336
TCONS_00071010 lncRNA upstream 1080245 17777860 ~ 17784911 (-) False XLOC_036336
TCONS_00072435 lncRNA upstream 1084842 17782457 ~ 17784706 (-) True XLOC_036336
TCONS_00070987 mRNA downstream 13222 16616854 ~ 16675464 (-) False XLOC_036324
TCONS_00070986 mRNA downstream 14102 16615798 ~ 16674584 (-) False XLOC_036324
TCONS_00070991 mRNA downstream 14680 16653819 ~ 16674006 (-) True XLOC_036324
TCONS_00070988 mRNA downstream 38091 16630482 ~ 16650595 (-) False XLOC_036324
TCONS_00070968 mRNA downstream 79682 16597139 ~ 16609004 (-) True XLOC_036321
TCONS_00070994 mRNA upstream 4491 16702106 ~ 16712255 (-) False XLOC_036326
TCONS_00070995 mRNA upstream 4526 16702141 ~ 16712111 (-) False XLOC_036326
TCONS_00070996 mRNA upstream 6514 16704129 ~ 16712111 (-) False XLOC_036326
TCONS_00070997 mRNA upstream 13019 16710634 ~ 16725959 (-) False XLOC_036326
TCONS_00070998 mRNA upstream 15201 16712816 ~ 16725573 (-) True XLOC_036326
TCONS_00070990 other downstream 23040 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00070989 other downstream 31600 16632735 ~ 16657086 (-) False XLOC_036324
TCONS_00070985 other downstream 75577 16613029 ~ 16613109 (-) True XLOC_036322
TCONS_00070984 other downstream 75805 16612808 ~ 16612881 (-) False XLOC_036322
TCONS_00070983 other downstream 76669 16611935 ~ 16612017 (-) True XLOC_036323
TCONS_00071006 other upstream 554624 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00071054 other upstream 1817425 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 1825466 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071065 other upstream 1887078 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071074 other upstream 2517110 19214725 ~ 19215684 (-) False XLOC_036363

Expression Profile

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