RNA id: TCONS_00070995


Basic Information

Item Value
RNA id TCONS_00070995
length 1599
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_036326
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16702106 ~ 16725959 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCATTCACAGTCTTGAACACCCAGCCGGTGGATATAAGAAAGTCTTTGAGTCGTGTGAAGAGTTAGCGGAGCCCATTCCTGCTCATGTCTCAGGTGAAATTCCAGCATGGCTGTCTGGCAGTCTGCTCCGCATGGGCCCTGGCCTCTTTGAAGTTGGAGATGAACCATTTTATCATCTTTTTGATGGCCAGGCTCTCCTTCACAAATTTGACCTGAAGGATGGACGTGTTACATATCATCGCAGGTTTATCAGAACTGATGCTTATGTGAGAGCCATGACAGAGAAAAGGGTTGTGATCACAGAGTTTGGCACCACTGCATATCCAGATCCATGCAAAAACATATTTTCCAGGTTTTTCACTTACTTTCAAGGGATTGAGGTGACAGACAATTGCCTTGTAAACATTTACCCCATCGGTGAAGACTTCTATGCCTGCACTGAAACCAACTTCATTACCAAAGTCGATCCTGATACCCTGGAAACAGTTAAAAAGGTGGACCTCTGCAATTATCTGTCGGTTAATGGTTTAACAGCACATCCACACATTGAAGCAGACGGTACTGTATATAACATTGGAAACTGCTTTGGGAAGAACATGTCCCTGGCCTACAACATTGTCAAGATCCCGCCACTACAAGAAGATAAATCCGATCAGTTTGAGAagtcaaagattttggtccagtTTCCAAGCAGTGAGAGGTTCAAACCATCCTACGTTCACAGCTTTGGCATTACAGAGAACCACTTTGTTTTTGTTGAGACTCCGGTGAAGATCAATCTGCTGAAATTTCTCACATCCTGGAGCATCAGAGGGTCAAATTATATGGACTGCTTTGAGTCTAATGACAAAATGGGAACATGGTTTCATCTGGCTGCCAAAAATCCCGGCAAATACATCGACCACAAATTCAGAACATCTGCCTTCAATATTTTTCACCACATTAACTGTTTTGAAGACCAAGGCTTTATTGTTGTAGACCTGTGCACATGGAAGGGCCATGAATTTGTGTACAATTATCTATATTTGGCAAATCTGAGACAAAACTGGGAGGAAGTCAAAAAAGCAGCCCTGAGAGCTCCACAGCCGGAGGTGCGCAGATACGTGCTTCCACTGGACATCCACAGGGAAGAGCAAGGGAAGAACTTGGTTTCTCTTCCATACACCACAGCCACTGCTGTCATGCGCAGTGATGGAACCGTTTGGCTCGAACCTGAAGTTCTTTTCTCTGGACCACGTCAGGCTTTTGAGTTTCCTCAGATAAACTACAGCAAATTCAATGGGAAAGATTACACCTTTGCCTATGGACTCGGACTGAACCACTTTGTTCCAGACCGGATTTGCAAGCTGAATGTGAAAAGTAAAGAAACCTGGATCTGGCAGGAGCCGGACGCCTATCCTTCTGAACCACTGTTTGTACAAAGCCCTGATgctgaagatgaagatgatgGTGTTCTGTTGAGTATTGTAGTGAAACCTGGAGTTTCTCAGAGGCCGGCGTTTCTTCTCATCCTCAAGGCCACTGACCTGACAGAAATAGCACGTGCGGAGGTTGACGTCCTCATTCCTGTCACTCTCCACGGCATCTACAAACCTTAG

Function

GO:

id name namespace
GO:0001523 retinoid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0046872 metal ion binding molecular_function
GO:0050251 retinol isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-505 Enables retinol isomerase activity. Predicted to be involved in retinoid metabolic process. Located in cytosol and membrane. Is expressed in Muller cell; retina; retinal ganglion cell layer; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 2; retinitis pigmentosa; retinitis pigmentosa 20; and retinitis pigmentosa 87. Orthologous to human RPE65 (retinoid isomerohydrolase RPE65).

Ensembl:

ensembl_id ENSDART00000184147

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072434 lncRNA downstream 88478 16609622 ~ 16613663 (-) False XLOC_036322
TCONS_00072433 lncRNA downstream 88511 16609622 ~ 16613630 (-) False XLOC_036322
TCONS_00072432 lncRNA downstream 88512 16609622 ~ 16613629 (-) False XLOC_036322
TCONS_00072015 lncRNA downstream 88524 16609622 ~ 16613617 (-) False XLOC_036322
TCONS_00072020 lncRNA upstream 947486 17659597 ~ 17661194 (-) False XLOC_036335
TCONS_00071009 lncRNA upstream 948074 17660185 ~ 17661172 (-) True XLOC_036335
TCONS_00072021 lncRNA upstream 1065749 17777860 ~ 17782923 (-) False XLOC_036336
TCONS_00071010 lncRNA upstream 1065749 17777860 ~ 17784911 (-) False XLOC_036336
TCONS_00072435 lncRNA upstream 1070346 17782457 ~ 17784706 (-) True XLOC_036336
TCONS_00070992 mRNA downstream 4229 16688370 ~ 16697912 (-) False XLOC_036325
TCONS_00070993 mRNA downstream 4526 16688686 ~ 16697615 (-) True XLOC_036325
TCONS_00070987 mRNA downstream 26677 16616854 ~ 16675464 (-) False XLOC_036324
TCONS_00070986 mRNA downstream 27557 16615798 ~ 16674584 (-) False XLOC_036324
TCONS_00070998 mRNA upstream 705 16712816 ~ 16725573 (-) True XLOC_036326
TCONS_00070999 mRNA upstream 20723 16732834 ~ 16738204 (-) True XLOC_036327
TCONS_00071000 mRNA upstream 29980 16742091 ~ 16788626 (-) True XLOC_036328
TCONS_00071001 mRNA upstream 343181 17055292 ~ 17067364 (-) False XLOC_036329
TCONS_00071002 mRNA upstream 343182 17055293 ~ 17064243 (-) True XLOC_036329
TCONS_00070990 other downstream 36495 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00070989 other downstream 45055 16632735 ~ 16657086 (-) False XLOC_036324
TCONS_00070985 other downstream 89032 16613029 ~ 16613109 (-) True XLOC_036322
TCONS_00070984 other downstream 89260 16612808 ~ 16612881 (-) False XLOC_036322
TCONS_00070983 other downstream 90124 16611935 ~ 16612017 (-) True XLOC_036323
TCONS_00071006 other upstream 540128 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00071054 other upstream 1802929 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 1810970 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071065 other upstream 1872582 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071074 other upstream 2502614 19214725 ~ 19215684 (-) False XLOC_036363

Expression Profile

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