RNA id: TCONS_00070961


Basic Information

Item Value
RNA id TCONS_00070961
length 2600
RNA type mRNA
GC content 0.46
exon number 20
gene id XLOC_036316
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 16470358 ~ 16559241 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAtgctaaaaaaaaagcacagacaCACACGGCCGCTGTTGCTTCTCCAGCAGAAGTTCAGCGATCACCTGTGGGACTGTAGGCGAGGACAGGTAACGAATGTCCAGGtgactctctctcacactctctacGCTCTTGCTGGATTCACAATCCTCTCTACTCGTCTGGGATGAGTTTCTGGAGACGAAACAAGAAGAATGACGACCAAAAGAATCAACTCAAAACTGAAGAGTCACTGGACAGCCCCACATCTCCATCCCAGTCACCTATTATAGAGAAAGATGGTTTGGACTCTGTCATCTCTGATTACGGGTCAGAAAAGCCTGACCTGTCCGCGGATCTTCAAGACTGCATGGCTGCACTGGACCTGTTCCTGCAAAATCAATTTGACGAGTCTCTGAGCAGACTACGAAGCAGGAATAAAGACAGCATGTATCACGCGCTCACGTATGCCACTATACTGGAAATGCAGGCCATGATGACCTTCAACCCGGAGGACATATTTGCTGCAGGAAACACAATGAAGGAGGCACAGGCTGTGTGTCAACGATACCGCAAAAAGTCTTCATTCAACAGCAAAAACTTCACCGAAGAGGAGCTTCATGCTGAAGTGTGCTATGCCGAATGCCTCCTCCAGAGAGCAGCACTCACTTTCCTTCAGGATGAAAATATGATCAGCTTCATAAAGGGAGGAATGAAAGTGAGAAACAGCTATCAAATATACAAGGAGCTTCATACGATCCTGAAATCTTCAGGTTATGTTCAAGGTGACAATCATGGTCATTTTGAGGGAGGTGTTAAACTCGGCATCGGGGCCTTTAACCTGATGCTGTCGTTGTTGCCAACGCGGACTCTCAGATTGTTGGAATTTGTGGGCTTTTCTGGTAACAAAGAGTTTGGTCTTGAGCAGCTCCAGGAGGGCTGTTCTGAGCACACGTTTAGGTCTTTCCTGTGTAACATGTTGTTGCTCTGCTACCACACCTTCATGAGCTTCATTCTGGGCACTGGAGAGGGGGATGTGGAAGATGCAGAAAAACTGCTTCAGCCTTATCTGAAAAAGTATCCGAAGGGATCCATTTTCCTGTTCTTCGCTGGTCGAATAGAGGAAATTAAAGGAAATCTGGATGCTGCTATCAAGCGTTTTGAGGAGTGTTGTGAAGCTCAGCAGGACTGGAAACAGTTCCATCACATGTGTTACTGGGAGCTGATGTGGTGCTTCACCTACAAAAGGCACTGGAAGATGGCCTACTTCTACGCAGACCTGCTCAGTAAAGAAAACAACTGGTCTAAGGCCACATATGCGTATATGAAAGGTGCTTACCTCAGCATGCTGAGTCGAGAGGAATGCCAGCCGTTCGGGGAGAATGAAGTGGCTTTGTTTAGGCAAGTTCCCAGTCTAAAGCAAAAAATTGCTGGGAAATCGCTGCCCACAGAGAAGTTTGCTATTAGAAAAGCCAGACGCTATAATACTGATAATGTCATTCCTCTTCCTGCACCTCCACTGGAGATGATGTATATCTGGAACGGCTACACTGTGATCGGGAAGCACAAGGACCTGACAGAGGGCATGCTGAAGACATTGGATGAGGCCCAGCAGACGCTTGAGCAAACTCCAAGGACTGAGTTCACCACAGATGACCAGTGTGTGGTTAGTTTGCTGAAGGGCCTCTGTCTCAAACACTTGGGTTACAAGGAGGAAGCAGAACATTACTTCACCCTCGTCCTCTGCAATGAGAGTCTGATTAAATATGACCACTACCTGGTGCCCAATGCATTGCTGGAACATGGGTTACTGTGCTTGGAGGAGGGGAGAATAGATGAAGCCATCAAACTTCTGGAGGCCGCAAAacaaaACTACAAGAACTACTCCATGGAATCCCGAACACACTTCCGGATTCAGGCAGCTCTACATAAGGCCCGAGGCACAGCTGTGAACGGATACCATTCCTCACCTTCCAGCCCTTAACACTTAGGGTTTCCGCTGGGTCACAGCAACTAAGATCAGGCTTGACATGGGTTGCCAAATGCCCTGAGAGGGACTAACAGAGTACATGACCCAAACCGAGCTTATAGTGACGTCTCCTTGATTAAATAACGCATACAGAGATTTTTACTGTACATGGACAACAGCTGCATGAATATGTCACGTCAAGTGCCATGCAATTTAGCCAAGACCCAGAAATGACATCATGCTGTTGTGATGTCATGAAAATAACATCATGCTTTTAGAATATTGTACTTGTGTTGTTAATAGGGAGGATGACGATAATGATATGAAACACAATGTTAGGAGTGTAACAgtatgcatattcattcattcatttcttttccttaagcttagtctctattttagagattgccacagcggaatgaaccgccaactattccggcatatgttttacgcagcggatgcccttccaaccgcaacacagtactgggaaacacccatacacactcattcacacacatttatacactacagccaattgagtttattcagttcacctatgcCACATGTCTGTGGATTGTGGGGGCAACTGCagcagctggaggaaacccacgttgacacggagagaacatgcaaactcctcacaaaaatG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-42 Orthologous to human TTC39A (tetratricopeptide repeat domain 39A).

Ensembl:

ensembl_id ENSDART00000146469

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072412 lncRNA downstream 201411 16263930 ~ 16268947 (-) True XLOC_036313
TCONS_00072411 lncRNA downstream 215697 16218254 ~ 16254661 (-) True XLOC_036311
TCONS_00070957 lncRNA downstream 405948 16062172 ~ 16064410 (-) True XLOC_036310
TCONS_00072410 lncRNA downstream 1218889 15251183 ~ 15251469 (-) True XLOC_036303
TCONS_00072409 lncRNA downstream 1388693 15078036 ~ 15081665 (-) True XLOC_036301
TCONS_00072413 lncRNA upstream 51421 16566548 ~ 16584612 (-) True XLOC_036318
TCONS_00072414 lncRNA upstream 55392 16570519 ~ 16577742 (-) False XLOC_036319
TCONS_00072415 lncRNA upstream 55392 16570519 ~ 16577747 (-) False XLOC_036319
TCONS_00072416 lncRNA upstream 55392 16570519 ~ 16577750 (-) True XLOC_036319
TCONS_00072417 lncRNA upstream 94495 16609622 ~ 16612691 (-) False XLOC_036322
TCONS_00070960 mRNA downstream 5905 16424722 ~ 16464453 (-) True XLOC_036315
TCONS_00070959 mRNA downstream 63918 16274778 ~ 16406440 (-) True XLOC_036314
TCONS_00070958 mRNA downstream 211295 16257220 ~ 16259063 (-) True XLOC_036312
TCONS_00070955 mRNA downstream 478557 15633454 ~ 15991801 (-) True XLOC_036308
TCONS_00070953 mRNA downstream 949451 15502785 ~ 15520907 (-) True XLOC_036306
TCONS_00070965 mRNA upstream 4085 16519212 ~ 16559241 (-) True XLOC_036316
TCONS_00070967 mRNA upstream 67212 16582339 ~ 16592491 (-) True XLOC_036320
TCONS_00070968 mRNA upstream 82012 16597139 ~ 16609004 (-) True XLOC_036321
TCONS_00070986 mRNA upstream 100671 16615798 ~ 16674584 (-) False XLOC_036324
TCONS_00070987 mRNA upstream 101727 16616854 ~ 16675464 (-) False XLOC_036324
TCONS_00070956 other downstream 554031 15916210 ~ 15916327 (-) True XLOC_036309
TCONS_00070954 other downstream 837511 15632732 ~ 15632847 (-) True XLOC_036307
TCONS_00070951 other downstream 1164835 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070936 other downstream 2018575 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070922 other downstream 2375842 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070966 other upstream 50710 16565837 ~ 16566479 (-) True XLOC_036317
TCONS_00070975 other upstream 95121 16610248 ~ 16610319 (-) False XLOC_036322
TCONS_00070978 other upstream 95987 16611114 ~ 16611194 (-) False XLOC_036322
TCONS_00070980 other upstream 96200 16611327 ~ 16611411 (-) False XLOC_036322
TCONS_00070982 other upstream 96539 16611666 ~ 16611747 (-) False XLOC_036322

Expression Profile

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