RNA id: TCONS_00070953


Basic Information

Item Value
RNA id TCONS_00070953
length 2720
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_036306
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 15502785 ~ 15520907 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttattctattctttttaagaaatgtaaagtgattTTGTTGTATAAGAAAACttcttgttaataataaaaaagaaaagctgaACCCCCCAAATAAACCTCTGATCACTTCTCGTTTGATTAGTACAGTCTGAAGCGACGAGGCTCTGCATTTCCTCAACCGAGACGCACCAGCCAGACAGAACCAGTCGATCGCAGAGGCCTCCCCACTGTCTCCCCCCtctttgtgtttatatatgttttttaaaatcttttttgagGGAAACTGTCAAGCCCTATCCCAAAGAGCAGGGACCAAAGAGCAAAAATAATGTACGCGTTCGTGCGTTTCTTGGAGGACGATATGTGCTACGCGTTACCTGTGTCAGACGTGAAAGATTTCCAGCCTGTGCACAAAAGAGATTTTGATGATCAGAAGGTGTATGTGGTGCTGAGAGGCGCAGGCCAGCCTGCCAAAGCACACATCCTCGCCCTGGCAGaaaGCATTGAGGAATTTGAGCACAGTATTATGCAAAAGAAGATGAAAATACCCAAGATGTCGAACAGGAACACAGTGGAGAATCATTTTGGCGAGGAGAGAATGCCCCTTAGACATAAAAAGGTCCAGTCACAGGAGCATCAGCGGGCCACTTCAAACTCCTCAAAGAGCCTGGCTGCGGTTGTGGCTCGACTGGAGAGGAACGCAGTCAACTCATGCACAGAGGGAGAGGAGCTGGACAGACTCACaacagaggaagaggaagagcagGACGAGGCCGTGGTTCCTCGTGTCCTGTACGAAGAACTGGTGCACAGCTACAGGCAGCAGGAAGAGGAAATGAGACGtctgcagcaggaactggagcGCACACGCAGACAGCTGCTGCAGCAGGCCAAGAAGCTGAAAGAGTACGGCAGTCTGCTGACAGAAGTCAAGGAGCTGCGCGATTTCAATAGACGCCTGCAGGATGTCCTGCTCATGAGGCTCGGCAGCGAGCCGATGCATGACAATGGCACACAGACAATCAAACCAGAGGTGGTGGAGCCCATCAGTGAGCCACAGGAAGCATGTCAGGAGGAAGCAAACACAAGCTCCACCCACTCACCGTCCCCGAGAACCGTCTACACCTTCAATGATGGAAAAGTGCACTTGGGCGGAGGGATTTGGGTGGATGAGGAGAAATGGCACCAGCTACAACGGACACAGGGAGACTCCAAATTCACCAAAAACCTGGCGGTGATGATCTGGGGCACTGAAACCCTGAAGAACCGCAGCGTGACTGGTGTCGCTACAAAGAAGAAGAAAGATGCCCTGCCCAAACCACCGCTCTCACCAAGCAAGCTCAAAATTGTCAGAGAGTGTCTGTACGACCGCGTTTCTCAAGAGACAGCCGACAGCGCAGAGATCACCCAGCGATTATCCAAAGTGAACAAATACATCTGCGAAAAGATCATGGATATCAACAAATCCATCAAGAACGAGGAACGGCGAGAATCCAAGCTCCTCATCCAGCAGACGGTGAAGATGGAGAACTTTCCGTACGACGGCCTGTAGGGGGTGCTGAAGTTGTCACCATAGCTCATTCTACTCCTCAAGGACTTCTGGTGGAGAAGGTGCACGTAATCACCGGCGCTGCCAATTGAGATTCCCACTGATGCCCTCCCAAGACCTCTCTGTCTTTTACTCTCGCAGCCCCTGTTTTACAGCCTGCCTGACAGTTTTACCTCGCTCCACGCTGCCTTTGCATGCCGGTGTGCATTCTGTGAGTGAATGGGGGTGGGTTTTTGTAAGCTTTGATTGGGAGGGGCGGGCTCGGATGTCATGTGTGATAGACAGGAGCCATCCTTTAAATAGCGTGCGAGAAAAATGTGTTTGGCACATCAGCTTGTGTTCTGTGTCAGAACATGTACTAAAGCGGTAAAGTCTTCTTGTTTCAGGGGAGTGTTTTTGGAGGTGTCATAAATGCTGGCTTAGAGGTGGAGTCTTTAAGGGGGAGGTAGGTCACTTCACAGGGACCATCTGGTAAAGGTACTTAACATAAAGAGTTGCACTTTTAAACAGGGTCACACCCTGCGTCGTCTTAATGAACGattgatttaattaatcaatctAGGCCTAATTGCTCCCGTTAATTGCTTTCCTGAGATGACTACTGATGGTCCGTTCTCGTTCGTGATGGTTGTTTGGGGTGGAGAGGTCGCATGTAGTCAGTGGTGCTAAACAGTTGTCCTGAAAGATGATTAAGTGatgttttttctttagtttttaagaaatcagccacaattttttttctcttattcttTTAAAGGTAAATTTGGAGTTTTCATGATCATCCGTATATTATTTGGGCATCATAAAATATTGAATcacgctttattttgatagtccatttgttcaatttaagttatattgcatctacatgccagctaatttttattagatcataagtagactgttagattagGGTTAggcttagtgtaagttgacatgtactttcaTGTACtgtaagtttcttatagtcatttaaatgtctgtttagcagcagtatctacagattttaagcagacggtctactaatactctattggaccatcaaaataaagtgttactaaatattgacattttaacatatttgtttttttggttttttttttgacagcaaTAGTTGCAATATAGTTTGCTGAGGGTGTGTTTGCACTGGTACCTGGGGTTGTAacaatactggaattcagtaccaatcga

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-460 Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Orthologous to human BEND5 (BEN domain containing 5).

Ensembl:

ensembl_id ENSDART00000133114

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072410 lncRNA downstream 251316 15251183 ~ 15251469 (-) True XLOC_036303
TCONS_00072409 lncRNA downstream 421120 15078036 ~ 15081665 (-) True XLOC_036301
TCONS_00072408 lncRNA downstream 712064 14783214 ~ 14790721 (-) True XLOC_036300
TCONS_00070943 lncRNA downstream 924017 14578115 ~ 14578768 (-) True XLOC_036299
TCONS_00072407 lncRNA downstream 1007439 14491293 ~ 14495346 (-) True XLOC_036297
TCONS_00070957 lncRNA upstream 541265 16062172 ~ 16064410 (-) True XLOC_036310
TCONS_00072411 lncRNA upstream 697347 16218254 ~ 16254661 (-) True XLOC_036311
TCONS_00072412 lncRNA upstream 743023 16263930 ~ 16268947 (-) True XLOC_036313
TCONS_00072413 lncRNA upstream 1045641 16566548 ~ 16584612 (-) True XLOC_036318
TCONS_00072414 lncRNA upstream 1049612 16570519 ~ 16577742 (-) False XLOC_036319
TCONS_00070952 mRNA downstream 104025 15311289 ~ 15398760 (-) True XLOC_036305
TCONS_00070949 mRNA downstream 197257 15287424 ~ 15305528 (-) False XLOC_036304
TCONS_00070950 mRNA downstream 210588 15287628 ~ 15292197 (-) False XLOC_036304
TCONS_00070948 mRNA downstream 272806 15162022 ~ 15229979 (-) True XLOC_036302
TCONS_00070946 mRNA downstream 291621 15084386 ~ 15211164 (-) False XLOC_036302
TCONS_00070955 mRNA upstream 112547 15633454 ~ 15991801 (-) True XLOC_036308
TCONS_00070958 mRNA upstream 736313 16257220 ~ 16259063 (-) True XLOC_036312
TCONS_00070959 mRNA upstream 753871 16274778 ~ 16406440 (-) True XLOC_036314
TCONS_00070960 mRNA upstream 903815 16424722 ~ 16464453 (-) True XLOC_036315
TCONS_00070961 mRNA upstream 949451 16470358 ~ 16515127 (-) False XLOC_036316
TCONS_00070951 other downstream 197262 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070936 other downstream 1051002 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070922 other downstream 1408269 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070909 other downstream 1624940 13877728 ~ 13877845 (-) True XLOC_036279
TCONS_00070885 other downstream 2263693 13238973 ~ 13239092 (-) True XLOC_036261
TCONS_00070954 other upstream 111825 15632732 ~ 15632847 (-) True XLOC_036307
TCONS_00070956 other upstream 395303 15916210 ~ 15916327 (-) True XLOC_036309
TCONS_00070966 other upstream 1044930 16565837 ~ 16566479 (-) True XLOC_036317
TCONS_00070975 other upstream 1089341 16610248 ~ 16610319 (-) False XLOC_036322
TCONS_00070978 other upstream 1090207 16611114 ~ 16611194 (-) False XLOC_036322

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_05308426_05318353.mRNA True 2107 mRNA 0.50 6 CI01000010 5308292 ~ 5319096 (+)
bowfin (Amia calva) AMCG00004777 True 6673 mRNA 0.38 6 CM030140.1 1691028 ~ 1718262 (-)