RNA id: TCONS_00070950


Basic Information

Item Value
RNA id TCONS_00070950
length 576
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_036304
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 15287424 ~ 15305528 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGATTCTGTCAGACGCTCTGTATTCTTCACATCCATTGTGTCAGGATGTGCCGCCACTGTCTTCCAGgaTAAAGAGagtgaggaggaggagaagggagTCACACAGAGTTCATGTGTTTCCGCCCACTGTGGTTCAGTGATTGACAGCCGGCTGCAACAGGACAGTAGAAGTATTTCTGGAGAACCATCTGCTCATGTAGAAAGTGGAACATTCTGGACCAACAGAGCGACAGCAAACACAGAGACGTCCCACAGAGCAGTCTTTGAGGACAGTCTGAGCAAAATTTACAAGGAGCTCTACAAAAACGCATCACTAAACACCTGGACACAGTGACCACACACAACTCCAGATATATATGGCTGGTAAACTGCAggttttttcagttgttttgccacaaatttctGAACCCTGATGTCACTTTTTAAAACTCTGAACAGTCACTACTTTTAACAGGTTTCCTAGTGTTTAAAACATTGCATGTTGCGTTCATTTCTTTAGAGAAGTCTTGCATTTGCAGGATTATAGGTTCACATAATCCTTTTATCATACAAATAGTACAGAAACACAACTTTA

Function

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0097224 sperm connecting piece cellular_component
GO:0032027 myosin light chain binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050417-351 Predicted to enable myosin light chain binding activity. Predicted to act upstream of or within spermatogenesis. Predicted to be located in sperm connecting piece. Is expressed in neural tube; spinal cord; and ventral mesoderm. Orthologous to human SPATA6 (spermatogenesis associated 6).

Ensembl:

ensembl_id ENSDART00000140867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072410 lncRNA downstream 36159 15251183 ~ 15251469 (-) True XLOC_036303
TCONS_00072409 lncRNA downstream 205963 15078036 ~ 15081665 (-) True XLOC_036301
TCONS_00072408 lncRNA downstream 496907 14783214 ~ 14790721 (-) True XLOC_036300
TCONS_00070943 lncRNA downstream 708860 14578115 ~ 14578768 (-) True XLOC_036299
TCONS_00072407 lncRNA downstream 792282 14491293 ~ 14495346 (-) True XLOC_036297
TCONS_00070957 lncRNA upstream 769975 16062172 ~ 16064410 (-) True XLOC_036310
TCONS_00072411 lncRNA upstream 926057 16218254 ~ 16254661 (-) True XLOC_036311
TCONS_00072412 lncRNA upstream 971733 16263930 ~ 16268947 (-) True XLOC_036313
TCONS_00072413 lncRNA upstream 1274351 16566548 ~ 16584612 (-) True XLOC_036318
TCONS_00072414 lncRNA upstream 1278322 16570519 ~ 16577742 (-) False XLOC_036319
TCONS_00070948 mRNA downstream 57649 15162022 ~ 15229979 (-) True XLOC_036302
TCONS_00070946 mRNA downstream 76464 15084386 ~ 15211164 (-) False XLOC_036302
TCONS_00070945 mRNA downstream 105396 15084386 ~ 15182232 (-) False XLOC_036302
TCONS_00070947 mRNA downstream 137497 15100387 ~ 15150131 (-) False XLOC_036302
TCONS_00070944 mRNA downstream 158055 15084386 ~ 15129573 (-) False XLOC_036302
TCONS_00070952 mRNA upstream 19092 15311289 ~ 15398760 (-) True XLOC_036305
TCONS_00070953 mRNA upstream 210588 15502785 ~ 15520907 (-) True XLOC_036306
TCONS_00070955 mRNA upstream 341257 15633454 ~ 15991801 (-) True XLOC_036308
TCONS_00070958 mRNA upstream 965023 16257220 ~ 16259063 (-) True XLOC_036312
TCONS_00070959 mRNA upstream 982581 16274778 ~ 16406440 (-) True XLOC_036314
TCONS_00070936 other downstream 835845 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070922 other downstream 1193112 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070909 other downstream 1409783 13877728 ~ 13877845 (-) True XLOC_036279
TCONS_00070885 other downstream 2048536 13238973 ~ 13239092 (-) True XLOC_036261
TCONS_00070876 other downstream 2274801 12998252 ~ 13012827 (-) False XLOC_036256
TCONS_00070951 other upstream 170 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070954 other upstream 340535 15632732 ~ 15632847 (-) True XLOC_036307
TCONS_00070956 other upstream 624013 15916210 ~ 15916327 (-) True XLOC_036309
TCONS_00070966 other upstream 1273640 16565837 ~ 16566479 (-) True XLOC_036317
TCONS_00070975 other upstream 1318051 16610248 ~ 16610319 (-) False XLOC_036322

Expression Profile

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