RNA id: TCONS_00070946


Basic Information

Item Value
RNA id TCONS_00070946
length 2796
RNA type mRNA
GC content 0.53
exon number 13
gene id XLOC_036302
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 15084386 ~ 15229979 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTCCACACGGAGGGATACATGAAGCCCTAACTGCATCATGAAGCACATGTCCATCTCAAAATGGCTAAGTCAGCTGGGTCTACCTCAATACTGCATTCTATTTGATGAAGAATATGACGGAGTGGAGGTAAAATCAGCACACACTGACTTGCTGCACCTCACAGAGATGGATCTGTTGGGTTTGGGGGTCCAAAGTCGTCTTCATCGAATCCATATTCTCTCTAGTATCCAAGTCCTGCGAGAACGTGAAACAAAACGAGAGCTGAGGATGATGGCGGAAGGGAGGTTTTCCAGTTTGCCCAGAAATATGCACGTTGGACGTCAGTGTCCGCTTGCATCCTCCATGGATCTGCTGAGCTCACGGCCGGAGCTCTCCGAGATGCCAGTCAGTGGATACCAAGGCATCTCCATCCACGGCACACTGCCTCGCAAGAAGAAGACCACCACTGGTTCCCCTGTAAAGCAATGGGAGGTGAATGGAAATGTAGGATCTTTAGCAGCGCCATACCCAGGCCGACATCGCCTGCCACCGTCACCGCTGATACACAACATCATCGAAGAACACCAGACTTTCTGCTCAGACCGGAAACAATCAAGGAACAGCGCAGGAATGGACCCTACGATGGAGTACGTCAAGTTCTCAAGAGACAAGTACATCTTGGATGGACCGCCGGAGAAACTTCGGAGGGAGTTGGAGGAAGAACTGAAACTAAGCAGTGAGGAACCGAGGAGCCATGCCTGGTATCACGGAGCCATTCCTAGACAGGTGGCTGAAAACCTGGTCCAGCGAGATGGAGATTTTCTGATCCGGGACTCTCTGTCCAGCCCTGGCAACTACGTTCTGACCTGTCAGTGGAAGAACAGCCCTCAACACTTCAAAATCAACAAGCGGGTCGTAGCCATGAACGAGGCCTACTCACGGGTTCAGTACCTGTTTGAGAAGGAGGGATTCGATAGCATCCCCGCACTGGTGCGATATTACGTGGGCAACCGTGAGCCGGTCTCTGAGGTCATCGGAGCGATTATCTTCCAGCCGATCAACAGAGCTCTGCCTCTGAGGTGCCTGGAGGAGAAATATGGAGTGGGATCTATACGTGTAGAGGCAGGATATCTGGAGAGAAAGAGCCTGACGTCCAAACGGCTGAGTCTGAATATCATGAATGGACACGGTCAGGATCACACCCTCAGCCGTGGAAACCTCCTCAGCAACAAGGATAAATGTGGAAGTCAACCAGCATGTCTAAACCACGTTCAGGAGAGGAGACGGCCGCTGAAGACCCATCAGTCGGAGAGCTTCCTCCCTATCGGCTCCAGGCCGCAGGCTCAGGTTCAGCATATGGAGCACCAGCCGTGCCCCAAATCTCCGGTTTTTCGAACGGGAAGCGAGCCAGCACTGAGTCCCACAGTGCCACGCAGAATGGCCTTTGACACTCTGCCTGGTGAGGCCATCCGCGGCTCTGACAGCCAGCTGTGTCCCAAACCACCCCCTAAACCCAGCAAGGTCCCCACAGTAAGAGTACCGTGCATCCCAGCCCTGAAAACCCTTGTCGTCCCACCTGTCCCTCCAGTCAAGCCCCACAAGCACAGACCTTCACTCCAGCAGCAGCAGTCAGGCAGTCCAGAAATGAGCTACTGTGAACTGAGTCCATGCAGCCCTGCTGACTGGGAAAAGATGAACAGCTTACAGGCTAATGGATATGTGGAGAGGCTAAAGACAGACGGCAGCATTAAACTAGACCGCAGCTCCTACCACAACGCCATTGAGGCCTTAGACAACGACAGCGAGGAAGACACCGAAGAGGATGCGGATAAAGAACAGAACGGCAAGAAAGCTTTCCAAAAACCtgtgtttgaaactgaatcaGCGTTCAGACCTGCAAATGTCAACTTCAGGCTGCTGCCTAAGGAGAACAAGCCTCTGGAGATGACGGTGCTGAAGAAAGCCAAAGAACTGCTGGTCAGTCAGGATCCAAAGACCATCGCCAAACACATCCTGCAAGCAGACTGTCAGGTTGCCAGGATACTGAATGTTTCTGAGGAGGTGAAAGGTCAGATGGGTGTGAGCTCCGGGCTGGAGCTGGTGACCCTTCCTCATGGACGACAGCTGAGGCTGGACCTCATAGAGAGGCATAACACTATGGCGATCGGAGTGGCTGTGGACATCCTGGGGTGTACAGGAAGTCTGGAGGAGCGAGCAGCCACACTAAACCGGATCATTCTGGTGGCTCTGGAGCTCAAAGACTCCATGGGGGATCTTTATGCCTTTTCCTCCATAATGAAAGCACTGGACATGCCTCAGATTACCAGACTGGATCACACATGGACTAGCTTGCGGAGGAAATATACACAGACTGCCATCATTTATGAGAAATCTTTAAAACCGTTCTACAAAGGACTCTATGAAGGAGGTGCTGAAATCCCGCTGAGCAATGCCAGTGTTCCTCTGCTGATGCCGCTGCTCACCTTGATGGAGAGGCCTGCAGTCACCTTCGAGGGTATGGACGTCTGGGAGAACACCGATCAAGGCTGTGAAATCATGTTTCGGCACCTGGAAGGAGCTCGAGCGGTTGCACGCAATGCAGACACCTACACCTGCAATGCACAGCGGATCCTCCAGGACTTCCAACCCCATGAAGACATGCTGGAGATCTTGAGGACAGATTTCCAGCTGCGTTTGCTCTGGGGGAGCAGAGGAGCTGCAGTGGAGCAGACTGAGAGATACGACAAATTCAAGCTCATCCTCACGGCCCTGTCTAGAAAACTAGAGCCTGCAGTCAAACACACAGAACTCTGA

Function

GO:

id name namespace
GO:0033138 positive regulation of peptidyl-serine phosphorylation biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-080513-4 Predicted to enable guanyl-nucleotide exchange factor activity and phosphotyrosine residue binding activity. Predicted to be involved in positive regulation of peptidyl-serine phosphorylation. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human BCAR3 (BCAR3 adaptor protein, NSP family member).

Ensembl:

ensembl_id ENSDART00000110550

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072409 lncRNA downstream 2721 15078036 ~ 15081665 (-) True XLOC_036301
TCONS_00072408 lncRNA downstream 293665 14783214 ~ 14790721 (-) True XLOC_036300
TCONS_00070943 lncRNA downstream 505618 14578115 ~ 14578768 (-) True XLOC_036299
TCONS_00072407 lncRNA downstream 589040 14491293 ~ 14495346 (-) True XLOC_036297
TCONS_00072014 lncRNA downstream 601929 14481859 ~ 14482457 (-) True XLOC_036296
TCONS_00072410 lncRNA upstream 40019 15251183 ~ 15251469 (-) True XLOC_036303
TCONS_00070957 lncRNA upstream 851008 16062172 ~ 16064410 (-) True XLOC_036310
TCONS_00072411 lncRNA upstream 1007090 16218254 ~ 16254661 (-) True XLOC_036311
TCONS_00072412 lncRNA upstream 1052766 16263930 ~ 16268947 (-) True XLOC_036313
TCONS_00072413 lncRNA upstream 1355384 16566548 ~ 16584612 (-) True XLOC_036318
TCONS_00070940 mRNA downstream 475102 14559378 ~ 14609284 (-) False XLOC_036299
TCONS_00070942 mRNA downstream 479780 14561222 ~ 14604606 (-) False XLOC_036299
TCONS_00070941 mRNA downstream 479780 14561222 ~ 14604606 (-) False XLOC_036299
TCONS_00070939 mRNA downstream 529601 14503610 ~ 14554785 (-) True XLOC_036298
TCONS_00070938 mRNA downstream 599787 14453933 ~ 14484599 (-) True XLOC_036295
TCONS_00070949 mRNA upstream 76260 15287424 ~ 15305528 (-) False XLOC_036304
TCONS_00070950 mRNA upstream 76464 15287628 ~ 15292197 (-) False XLOC_036304
TCONS_00070952 mRNA upstream 100125 15311289 ~ 15398760 (-) True XLOC_036305
TCONS_00070953 mRNA upstream 291621 15502785 ~ 15520907 (-) True XLOC_036306
TCONS_00070955 mRNA upstream 422290 15633454 ~ 15991801 (-) True XLOC_036308
TCONS_00070936 other downstream 632603 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070922 other downstream 989870 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070909 other downstream 1206541 13877728 ~ 13877845 (-) True XLOC_036279
TCONS_00070885 other downstream 1845294 13238973 ~ 13239092 (-) True XLOC_036261
TCONS_00070876 other downstream 2071559 12998252 ~ 13012827 (-) False XLOC_036256
TCONS_00070951 other upstream 81203 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070954 other upstream 421568 15632732 ~ 15632847 (-) True XLOC_036307
TCONS_00070956 other upstream 705046 15916210 ~ 15916327 (-) True XLOC_036309
TCONS_00070966 other upstream 1354673 16565837 ~ 16566479 (-) True XLOC_036317
TCONS_00070975 other upstream 1399084 16610248 ~ 16610319 (-) False XLOC_036322

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_05523602_05535371.mRNA True 2615 mRNA 0.50 9 CI01000010 5523516 ~ 5535692 (+)