RNA id: TCONS_00071012


Basic Information

Item Value
RNA id TCONS_00071012
length 1739
lncRNA type retained_intron
GC content 0.35
exon number 4
gene id XLOC_036337
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 17787308 ~ 17790965 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATCACAGCGTGACTATTTCTAGCCACAGCATCTGTTTTCTCTGCATTACTAACTTATATGTCAGCACTTTTTCTAAGCGATCACAGCGAATAAGGTAAGTATATGCTTTTCATTACCGCACAGAAATAAAGTCAAGAGTCAAACCAATGCTCAATAAGACATTCAGTGCAAATGAAAGTCGTCAACAGACAAGTCCACGTTTTTGTTGTATagtttaaaaataacattgaGCTATTTTTCCTGGTGTAATAATTGGGTGAGCTACTTTGTTAACAGCGAATATCTAAACAAACGCAAACTATCACAACTCTGAGGTAACGTTGAGTTAACGTTATATGTAGTGCAGTATAAAATATTGTGTGAATATTAAATATATGATTGTGAGTGAATACAGCTAACATCTCAATTACGTTTGATGAAGTTGCACTGTATTCTATTTTAGTCATACACTCATAATTTTCATTTTCGGTCCACAAAAGGGAAAGTTTTTCATTGTGAAACCCAGTCACCATCATTCAGCTTGAGTTATGGCAATGTTGAGCAGCAAATCCAACGAGGACATCAGATTAATGCTGGATGATTATGGAATAAAACACGGTCCTGTGGTCGATTCCACCAGAGCTCTTTATGAGAAGAAGCTGAGAGAAGCCATTGCTAAAAGCAAAAAGCCTCAACCTCAATCTGACAGGACATATTACAGGGAGGAAGAGGATGTCACTTACATTCATCATCGCAGACCTGTGAGTATAAACGGTTACAGCATTCAATAAAACTAGTTTCAAACCTGTTGCTAATCTTACTAATGTTAAATGTACATTCATTCAGCAACAATACGGTGATGTAAGTGACAGGTAAGTTCTTCTAAAATGCACAACAATTGAAACATTTTAGGATCAAACCGTTAAATAATACTTATATTTTCGGTTTATTAGAACTTGGACAGATTATAGAGCGATGGACTACGTAGATGAgCCTGTCGTATATCGGACTCAATCGTCTTACCGTAATATTTCAAGAAGCACACCTGCGGAGCCTCAAACGCAGAAAACACCAGAAAATAGTTCAACGCGTTTGGTCCCAATTTGGCTTCAGATATTAGTGTTTGTGATTGTGTCTGCTCTCCTGTACTTGGTTTTTATAAATATGGAACCAGCAGGTCCTGTCAAAAGACTGACATAGGGTTTCCTTTAGTGATCTTATCAAACcgaactttcatttttattttaaacaagcaTTGATTCAATACACTGGGTGTGATATGCGACATCTTGCAATGCGTTTTTAACTTgccgtgtgtgtgttttatcaaaATAATAACCCATTGTTAATCTATCGCAAATATGGAGGAAGTGGGTGTTTCAGGATGCACCTGTTGGGTTATTTTCAGGATATTACAGTGTTGAGGTATATTTAACTGTTctgtaattttttgtaatttctcAGTCTCATGTGACAGTAACTGAAAAACATTTTGTAGGATTTTCATAAACCCATTTCATTGGTTACAGTCACTGGATTTGGTCTTCATTGTTTTACAATGGTCAGTAAGCTGTTTTTTCATTGGAAATATCAGACGTATTGTAGCTCATGCATTTGAAATCTTGGAGCCAAATTATATGAATGTAATAACTGCTTCTTTGTTGTGTTCTGTGATTATTGTTTGAGGTGTTCTGGAGTTTTCTTTCAAtagaaactatttttttatacaagtaaaaaaaaacaatattttaaacttGG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903320 regulation of protein modification by small protein conjugation or removal biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0055029 nuclear DNA-directed RNA polymerase complex cellular_component
GO:0000428 DNA-directed RNA polymerase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005673 transcription factor TFIIE complex cellular_component
GO:0030880 RNA polymerase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-386 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000146023

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071010 lncRNA downstream 2397 17777860 ~ 17784911 (-) False XLOC_036336
TCONS_00072435 lncRNA downstream 2602 17782457 ~ 17784706 (-) True XLOC_036336
TCONS_00072021 lncRNA downstream 4385 17777860 ~ 17782923 (-) False XLOC_036336
TCONS_00072020 lncRNA downstream 126114 17659597 ~ 17661194 (-) False XLOC_036335
TCONS_00071009 lncRNA downstream 126136 17660185 ~ 17661172 (-) True XLOC_036335
TCONS_00071022 lncRNA upstream 205039 17995902 ~ 17997732 (-) False XLOC_036342
TCONS_00071023 lncRNA upstream 209519 18000382 ~ 18003684 (-) False XLOC_036342
TCONS_00071031 lncRNA upstream 409888 18200751 ~ 18203190 (-) False XLOC_036345
TCONS_00071041 lncRNA upstream 434176 18225039 ~ 18226068 (-) False XLOC_036347
TCONS_00071040 lncRNA upstream 434176 18225039 ~ 18228829 (-) True XLOC_036347
TCONS_00071008 mRNA downstream 15553 17554313 ~ 17771755 (-) True XLOC_036334
TCONS_00071007 mRNA downstream 270860 17395929 ~ 17516448 (-) True XLOC_036333
TCONS_00071005 mRNA downstream 602826 17174796 ~ 17184482 (-) True XLOC_036331
TCONS_00071004 mRNA downstream 619478 17163494 ~ 17167830 (-) True XLOC_036330
TCONS_00071003 mRNA downstream 619489 17163494 ~ 17167819 (-) False XLOC_036330
TCONS_00071014 mRNA upstream 9517 17800380 ~ 17822259 (-) True XLOC_036338
TCONS_00071015 mRNA upstream 130566 17921429 ~ 17926814 (-) False XLOC_036339
TCONS_00071016 mRNA upstream 130930 17921793 ~ 17926620 (-) True XLOC_036339
TCONS_00071017 mRNA upstream 167556 17958419 ~ 17980317 (-) True XLOC_036340
TCONS_00071018 mRNA upstream 192506 17983369 ~ 17987547 (-) False XLOC_036341
TCONS_00071006 other downstream 534954 17252239 ~ 17252354 (-) True XLOC_036332
TCONS_00070990 other downstream 1121662 16639131 ~ 16665646 (-) False XLOC_036324
TCONS_00070989 other downstream 1130222 16632735 ~ 16657086 (-) False XLOC_036324
TCONS_00070985 other downstream 1174199 16613029 ~ 16613109 (-) True XLOC_036322
TCONS_00070984 other downstream 1174427 16612808 ~ 16612881 (-) False XLOC_036322
TCONS_00071054 other upstream 724177 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071060 other upstream 732218 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071065 other upstream 793830 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071074 other upstream 1423862 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071076 other upstream 1423966 19214829 ~ 19216657 (-) True XLOC_036363

Expression Profile

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