G121680


Basic Information

Item Value
gene id G121680
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7561066 ~ 7562732 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU152516
tgtattttatctGGACAAACAACTTTATTTCTGGTAATGCATCTATACACTGTACATTCAGTCACTGTGGTATATAAGCATAGCTATTTTCAAACATAATCTCATAAAGtcctttattttacaatatagtCTGTGTCGTGACAGAGgggggggaggtggtggggAAGGGGGTGGAAAAGGCGCAAAGAAGACAAGGTAAAGGgcaaaatagataaataagcCAAGCTTTTTTCGTATTTGCGGCATTAATAAACAAGAAAGCATACATTTATCTCTTACATAAAAATAGTTCTAGAATCGGAAAGTTTATATACTAATAGCAGCAGCGTAGGGCTAAAAGGTATATGATAATGAGAAATGATCTGTGGTGAGGTGTttgtacttttcattttttgaaacTGTTGTGTGACCATTTTTGACCAAATGTACTTTATTTCAGGAATTTcttataacattaaaaaatatatggtctggtgaaaaaaaaaaagaatcatataataaaaagattctacagtgaaaaaaataagtaaaataatggaaaaaaaaaaaaaaacatgattatgtAGGGAATATCCACTAACGCACtgcaataattgtttttgaaacattttctctATGTTAAAACACAACTCATAAAACAAGACAGCTATTGTGTAAGAAAAGATTTCTTTTTTGAAAAAAGTAAAcaccatatacatttataatacaatagtgtaaaatgaaaaattatttacatgtgtaaatttgtatttttttttattttataatatttttttacactggCTAGCTTTGTTTGTGAAGAAATATCTGTTAATATTCACTGTTATTGCTCTTGTCTTGTCTTCCATTTAGAAAACGTATTtgagtatttgtgtgtgtgtagagagtaATGAATTAactaaacatacaaacaaaatagttttgaaaaTGGGAGAGTCAAGAGCCCATCATCACCTCTTCTCCCTTTCTtctggaacaaaaaaaactttagtaaaggaaactaaatgtaatgtttcattttagtgTAAATGAACGACTAAAACCTTTTAACACCCATTTCATTCTTCTGTGCAACTACAagaatgcagaaaataaacaccTCCTGAGCCGCCAAGATGCACCGCTGTGAAAGAAACGCTACTTGAACTTGATTTAATGCCCTCTTGATTGTTTTTGAAGCTCCACATTTGATAAGAGATGGGCTTCCATATCTATAATAAGGCCAAAACTTTAGTTTTAACATAGATATggtaatacttttatttatttatttatttatttattgtggggAGTGAATGAATAATTTTATAGCATCCTATagtgtttgtttaaacaaaccACCAAATGAAAAAGGGAAAGACCAATAATCATATTCATTCCTAGCAGAGGGTTCGTTTATCAGAACCTGCCTTGATCTTGTAAGGGAGCACAGAAGGACCCACAAATACTGAATGGAGACGCACAGTGAGGGTATGAAGAAGATGCCACTTGATCTACAAAACAATTTACACGGCAAATTAGACGTCATCTAGCTGGCCCTAGATCATATGAGGCATCTTAGAGGCCGGCAAAGCCAAGAACCTGCTCAAAGGAAAATAGTTTGACAACTTCGTTTTTCCCTAGTCTGGAAACCTTATGCCCAATTTCAGGCACTTGAGGTTATCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152516 True 1667 lncRNA 0.33 1 7561066 7562732

Neighbor

gene id symbol gene type direction distance location
AMCG00002216 NA coding upstream 170415 7382538 ~ 7390651 (+)
AMCG00002213 plch2,LOC107602463 coding upstream 182626 7325990 ~ 7378440 (+)
AMCG00002214 plch2,LOC107691057,LOC107710777,LOC107748961,LOC107595766 coding upstream 237165 7318975 ~ 7323901 (+)
AMCG00002211 mthfr coding upstream 369951 7178439 ~ 7191115 (+)
AMCG00002206 NA coding upstream 394239 7159632 ~ 7166827 (+)
AMCG00002217 NA coding downstream 95526 7658258 ~ 7663689 (+)
AMCG00002224 NA coding downstream 364858 7927590 ~ 7937933 (+)
AMCG00002232 NA coding downstream 417572 7980304 ~ 8010540 (+)
AMCG00002231 NA coding downstream 454161 8016893 ~ 8022378 (+)
AMCG00002236 NA coding downstream 565465 8128197 ~ 8151854 (+)
G121526 NA non-coding upstream 763023 6792976 ~ 6798043 (+)
G121417 NA non-coding upstream 1233585 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 1283166 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 1990819 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 2285143 5243709 ~ 5275923 (+)
G121688 ski,LOC106572818 non-coding downstream 83986 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 267075 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 347826 7910558 ~ 7917243 (+)
G121767 NA non-coding downstream 382633 7945365 ~ 7953624 (+)
G121862 NA non-coding downstream 1253598 8816330 ~ 8816553 (+)
AMCG00002215 NA other upstream 149836 7393800 ~ 7411230 (+)
AMCG00002190 acot7 other upstream 958458 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 2334410 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 4018889 3533814 ~ 3542177 (+)
G120742 NA other upstream 4601591 2956908 ~ 2959475 (+)
AMCG00002245 NA other downstream 1176039 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 2281473 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 3005180 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 3152067 10714799 ~ 10753893 (+)
AMCG00002310 NA other downstream 3794820 11357552 ~ 11359840 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G55590 NA non-coding NC_053116.1 CM020913.1 35960930 ~ 36016130 (-)