XLOC_035983 (CU499311.1)


Basic Information

Item Value
gene id XLOC_035983
gene name CU499311.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 47698098 ~ 47698470 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070484
atggtagagtggccagacggaagccacttccgcctggaatttgctaaaaggcatctgaaggactctcagaccataagaaacaaaattctctggtttgatgagactaaaattgaactctttggagtgaatgccaggcgttacgtttggagaaaaccaggcacatcatcaccagtgaagcatggtggtggcagcatcatgctgtgggaatgtttttcagcagcaggaactggaagactggtcaggatagaaggaaagatgaatgcagcaatgtacagagacatcctgaatgaagacctgctggGACCTGCTGCAGACTCGGGctacagttcatttttcagcagggcaatgACCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110736

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070484 True 354 mRNA 0.47 2 47698098 47698470

Neighbor

gene id symbol gene type direction distance location
XLOC_035981 si:ch211-251b21.1 coding upstream 33072 47633438 ~ 47665026 (+)
XLOC_035980 plch2a coding upstream 75566 47342586 ~ 47622532 (+)
XLOC_035979 NA coding upstream 438288 47256108 ~ 47259810 (+)
XLOC_035978 mthfr coding upstream 445546 47219107 ~ 47252552 (+)
XLOC_035977 si:dkeyp-100a1.6 coding upstream 500226 47188154 ~ 47197872 (+)
XLOC_035984 si:ch211-243p7.3 coding downstream 28449 47726919 ~ 47751940 (+)
XLOC_035985 ndufa7 coding downstream 105814 47804284 ~ 47811955 (+)
XLOC_035986 pimr185 coding downstream 118984 47817454 ~ 47819452 (+)
XLOC_035987 plod1a coding downstream 151603 47850073 ~ 47895817 (+)
XLOC_035988 mfn2 coding downstream 199264 47897734 ~ 47948903 (+)
XLOC_035976 CR792439.1 non-coding upstream 539065 47154662 ~ 47159033 (+)
XLOC_035974 BX000472.1 non-coding upstream 625761 47072220 ~ 47072337 (+)
XLOC_035973 BX000472.2 non-coding upstream 637583 47060401 ~ 47060515 (+)
XLOC_035971 FO704898.1 non-coding upstream 931553 46766429 ~ 46766545 (+)
XLOC_035989 NA non-coding downstream 319181 48017651 ~ 48018967 (+)
XLOC_035991 CR381598.1 non-coding downstream 476838 48175308 ~ 48175423 (+)
XLOC_035992 NA non-coding downstream 689102 48387572 ~ 48390135 (+)
XLOC_035993 CABZ01070222.1 non-coding downstream 692092 48390562 ~ 48390678 (+)
XLOC_035995 BX649478.1 non-coding downstream 816081 48514551 ~ 48527546 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G482676 LOC106579309 non-coding NC_048570.1 CM023224.2 19343029 ~ 19343443 (-)