XLOC_035986 (pimr185)


Basic Information

Item Value
gene id XLOC_035986
gene name pimr185
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 47817454 ~ 47819452 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070487
gTAACGTCAACCAGAAATACAAAGTCTTTCATCTAATAGGCAATGGATCGTTTGGAGAGGTCTTCAGTGGGATTCGTGTATCGGATTTCCGAAAGGTGGCAATCAAATACGTGAAAAAGACTAAAGAAATGAAAACCATCAAGATTGCACCATCTGACAAATCTGTTCCACAAGAGGTCGGTTTGATGTATTTGATGAGCAGAGGTCCAAATGTTCCTCAAATAATACAGCTGCTGGACTGGTACGAGTCACCAGAGTATTACGTACTGGTGCTAGAGCGCCCCAGAGCGTGTGTGGACATGCGCCAGTTTATATCCTGGTATGACAACAAAATCAGCGAAGAGAATGCACGAGTGGTGACGCACCAGGTGGTCACTGCTGCAAACGCTTGCTGTGAACGGGGCGTCTACCACAGCGACATCAAGCTGGAGAACCTCCTTATCAACCCCCACACCTTGCAGATCAAACTCATAGACTTTGGTGCTGGAAGACTAATAAGCAACTTAGGCTACACAACATTCTGTGGCACAAGAGTTTACGCTCCTCCGGAGTTTTTCAAACGTGGAAGGCTCCACGCCAAGCCTGCAACAGTGTACTCTATAGGAGTACTGTTGTTCATCCTGCTGTATGGACGTTTGCCTCTAAAAGAGCTCCAGAAGATTGTCAAAAGAACCTGGAAGCCTGAAGACCTATCCAAAGAATGCATAGATTTGATCTGCTCGTGTCTGCAAAGTAAGCCAGACAAGCGGATTCCTCTTGAAAAGATCCTCCAACACAACTGGTTCCAATCCTTGATCCCGGAGCCAAACAACAGAAGAAACGATTAGGAAGATCGGAACTGTTCAGAAGGACATTCAGACAAGAGCACTGCTGAAGAAGATCCAGGCACCTGAAAAAGACAGCACCAAGCTCCTCTTCCTCATCGAACCACTAAcgcccatctcctccttttcatCCAGCCACTAACACCAAACTCCTCCTCTTTATCGAGCCATTAACACcaagctcc
>TCONS_00072278
GGCACCATCTGACAAATCTGTTCCACAAGAGGTCGGTTTGATGTATTTGATGAGCAGAGGTCCAAATGTTCCTCAAATAATACAGCTGCTGGACTGGTACGAGTCACCAGAGTATTACGTACTGGTGCTAGAGCGCCCCAGAGCGTGTGTGGACATGCGCCAGTTTATATCCTGGTATGACAACAAAATCAGCGAAGAGAATGCACGAGTGGTGACGCACCAGGTGGTCACTGCTGCAAACGCTTGCTGTGAACGGGGCGTCTACCACAGCGACATCAAGCTGGAGAACCTCCTTATCAACCCCCACACCTTGCAGATCAAACTCATAGACTTTGGTGCTGGAAGACTAATAAGCAACTTAGGCTACACAACATTCTGTGGTATGTATTATCATAAAGACAAGTTATATTGAGCCTTCCGGGCAAAGCCAATGAGATAATAACTTACTGTCCTTGCTTTTTCTTCCAGGCACAAGAGTTTACGCTCCTCCGGAGTTTTTCAAACGTGGAAGGCTCCACGCCAAGCCTGCAACAGTGTACTCTATAGGAGTACTGTTGTTCATCCTGCTGTATGGACGTTTGCCTCTAAAAGAGCTCCAGAAGATTGTCAAAAGAACCTGGAAGCCTGAAGACCTATCCAAAGGTGAGAGCATGTGGATGATGAAACAGGATCTTAAAACATGTGATCATTTAAACCAACTGTAAAGTTTGTAGCAATCTAATAACCTGACATCTCTCCCTTCTTTCTTCACAGAATGCATAGATTTGATCTGCTCGTGTCTGCAAAGTAAGCCAGACAAGCGGATTCCTCTTGAAAAGATCCTCCAACACAACTGGTTCCAATCCTTGATCCCGGAGCCAAACAACAGAAGAAACGATTAGGAAGATCGGAACTGTTCAGAAGGACATTCAGGTCAGTTTAATGACAAAAGCCCCAACATGACtcatgaaaaatacaaaatattcaaCTTGAATGTAGAATGAATGTCTCAAATGTTCACTTTTTTATAGACACGACAGAATTAATTAGTTAAGGGGCTGAATTTTGTAGTTAACCTGTTAAGTTAAATCACAAATTGTACTTAACTTTTAATCTGTGAGCTGGACAAATTGAAATTTGACTTCTTTTGCGAGTCTTGTTTCAGTTTTTGTGTTAAAATGTTCATCTTacatgaaactaatattgcacaTTTGGTACTTTTCAACCAGACAAGAGCACTGCTGAAGAAGATCCAGGCACCTGAAAAAGACAGCACCAAGCTCCTCTTCCTCATCGAACCACTAAcgcccatctcctccttttcatCCAGCCACTAACACCAAACTCCTCCTCTTTATCGAGCCATTAACACcaagctcctcctcttcatccagCCTCTAACACTAAGCTCCTCTTTTATATTCAGCCAGGAACTCCGTCAAGCCACAAACATGGGGCAGTTTGTGGCTTTGACGAAGAGAGAAAGCTGAATGGGGCTGGTGTTTGTGGTTGCGTGAAAAGGAGGAGCTAAATGGGGCTGGTGTTTGTGGTTTCACAGAGGGGAGGAGGTAAATGGGGCCAATGTTCGTGGTTGCAGGAAAAGGAGGAGCCGTTTGCGGCAGGTGTTTATGGTTTGACGAAGAGGAGGAGCTGAATGGAGCCATCGTTTGTGTCTGGATGAAGAGAagaag

Function

symbol description
pimr185 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-450 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000006109

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070487 False 1009 mRNA 0.47 6 47817454 47819141
TCONS_00072278 True 1670 lncRNA 0.44 1 47817783 47819452

Neighbor

gene id symbol gene type direction distance location
XLOC_035985 ndufa7 coding upstream 5499 47804284 ~ 47811955 (+)
XLOC_035984 si:ch211-243p7.3 coding upstream 65514 47726919 ~ 47751940 (+)
XLOC_035982 dpp9 coding upstream 93910 47677208 ~ 47723544 (+)
XLOC_035983 CU499311.1 coding upstream 118984 47698098 ~ 47698470 (+)
XLOC_035981 si:ch211-251b21.1 coding upstream 152428 47633438 ~ 47665026 (+)
XLOC_035987 plod1a coding downstream 30621 47850073 ~ 47895817 (+)
XLOC_035988 mfn2 coding downstream 78282 47897734 ~ 47948903 (+)
XLOC_035989 NA coding downstream 198199 48017651 ~ 48018967 (+)
XLOC_035990 si:ch211-263k4.2 coding downstream 276459 48095911 ~ 48242997 (+)
XLOC_035991 CR381598.1 coding downstream 355856 48175308 ~ 48175423 (+)
XLOC_035979 NA non-coding upstream 557644 47256108 ~ 47259810 (+)
XLOC_035976 CR792439.1 non-coding upstream 658421 47154662 ~ 47159033 (+)
XLOC_035974 BX000472.1 non-coding upstream 745117 47072220 ~ 47072337 (+)
XLOC_035973 BX000472.2 non-coding upstream 756939 47060401 ~ 47060515 (+)
XLOC_035971 FO704898.1 non-coding upstream 1050909 46766429 ~ 46766545 (+)
XLOC_035992 NA non-coding downstream 568120 48387572 ~ 48390135 (+)
XLOC_035993 CABZ01070222.1 non-coding downstream 571110 48390562 ~ 48390678 (+)
XLOC_035995 BX649478.1 non-coding downstream 695099 48514551 ~ 48527546 (+)

Expression


Co-expression Network