RNA id: TCONS_00070487


Basic Information

Item Value
RNA id TCONS_00070487
length 1009
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_035986
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 47817454 ~ 47819452 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gTAACGTCAACCAGAAATACAAAGTCTTTCATCTAATAGGCAATGGATCGTTTGGAGAGGTCTTCAGTGGGATTCGTGTATCGGATTTCCGAAAGGTGGCAATCAAATACGTGAAAAAGACTAAAGAAATGAAAACCATCAAGATTGCACCATCTGACAAATCTGTTCCACAAGAGGTCGGTTTGATGTATTTGATGAGCAGAGGTCCAAATGTTCCTCAAATAATACAGCTGCTGGACTGGTACGAGTCACCAGAGTATTACGTACTGGTGCTAGAGCGCCCCAGAGCGTGTGTGGACATGCGCCAGTTTATATCCTGGTATGACAACAAAATCAGCGAAGAGAATGCACGAGTGGTGACGCACCAGGTGGTCACTGCTGCAAACGCTTGCTGTGAACGGGGCGTCTACCACAGCGACATCAAGCTGGAGAACCTCCTTATCAACCCCCACACCTTGCAGATCAAACTCATAGACTTTGGTGCTGGAAGACTAATAAGCAACTTAGGCTACACAACATTCTGTGGCACAAGAGTTTACGCTCCTCCGGAGTTTTTCAAACGTGGAAGGCTCCACGCCAAGCCTGCAACAGTGTACTCTATAGGAGTACTGTTGTTCATCCTGCTGTATGGACGTTTGCCTCTAAAAGAGCTCCAGAAGATTGTCAAAAGAACCTGGAAGCCTGAAGACCTATCCAAAGAATGCATAGATTTGATCTGCTCGTGTCTGCAAAGTAAGCCAGACAAGCGGATTCCTCTTGAAAAGATCCTCCAACACAACTGGTTCCAATCCTTGATCCCGGAGCCAAACAACAGAAGAAACGATTAGGAAGATCGGAACTGTTCAGAAGGACATTCAGACAAGAGCACTGCTGAAGAAGATCCAGGCACCTGAAAAAGACAGCACCAAGCTCCTCTTCCTCATCGAACCACTAAcgcccatctcctccttttcatCCAGCCACTAACACCAAACTCCTCCTCTTTATCGAGCCATTAACACcaagctcc

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-450 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000144825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072274 lncRNA upstream 557644 47256108 ~ 47259810 (+) False XLOC_035979
TCONS_00072275 lncRNA upstream 557644 47256111 ~ 47259810 (+) False XLOC_035979
TCONS_00072276 lncRNA upstream 557644 47256561 ~ 47259810 (+) False XLOC_035979
TCONS_00072277 lncRNA upstream 557644 47256925 ~ 47259810 (+) True XLOC_035979
TCONS_00070472 lncRNA upstream 658421 47154662 ~ 47159033 (+) True XLOC_035976
TCONS_00072279 lncRNA downstream 198510 48017651 ~ 48018967 (+) True XLOC_035989
TCONS_00072280 lncRNA downstream 568431 48387572 ~ 48390135 (+) True XLOC_035992
TCONS_00070499 lncRNA downstream 695434 48514575 ~ 48527546 (+) True XLOC_035995
TCONS_00070503 lncRNA downstream 790383 48609524 ~ 48610396 (+) True XLOC_035998
TCONS_00070505 lncRNA downstream 872328 48691469 ~ 48693254 (+) True XLOC_036000
TCONS_00070486 mRNA upstream 5499 47804284 ~ 47811955 (+) True XLOC_035985
TCONS_00070485 mRNA upstream 65514 47726919 ~ 47751940 (+) True XLOC_035984
TCONS_00070482 mRNA upstream 93910 47683352 ~ 47723544 (+) False XLOC_035982
TCONS_00070488 mRNA downstream 30932 47850073 ~ 47895817 (+) False XLOC_035987
TCONS_00070491 mRNA downstream 78593 47897734 ~ 47948903 (+) True XLOC_035988
TCONS_00070492 mRNA downstream 276770 48095911 ~ 48242997 (+) True XLOC_035990
TCONS_00070495 mRNA downstream 661388 48480529 ~ 48488746 (+) False XLOC_035994
TCONS_00070496 mRNA downstream 665314 48484455 ~ 48513642 (+) False XLOC_035994
TCONS_00070478 other upstream 196663 47607809 ~ 47620791 (+) True XLOC_035980
TCONS_00070471 other upstream 712809 47101040 ~ 47104645 (+) True XLOC_035975
TCONS_00070468 other upstream 745117 47072220 ~ 47072337 (+) True XLOC_035974
TCONS_00070466 other upstream 753443 47054645 ~ 47064011 (+) True XLOC_035972
TCONS_00070489 other downstream 31012 47850153 ~ 47855121 (+) False XLOC_035987
TCONS_00070490 other downstream 62835 47881976 ~ 47884038 (+) True XLOC_035987
TCONS_00070493 other downstream 356167 48175308 ~ 48175423 (+) True XLOC_035991
TCONS_00070494 other downstream 571421 48390562 ~ 48390678 (+) True XLOC_035993
TCONS_00070498 other downstream 695410 48514551 ~ 48527546 (+) False XLOC_035995

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000050_05819139_05823958.mRNA True 1601 mRNA 0.46 5 CI01000050 5819074 ~ 5823958 (+)