XLOC_035975 (arhgef16)


Basic Information

Item Value
gene id XLOC_035975
gene name arhgef16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 47099033 ~ 47143828 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070469
AGGAATGTTTTGAAGTTTtgcttaaaactgtatttttctaATATGTTTAGCCTCCGTGCTGGGATATCTGAGGTCTCCACACTTTCAGAATCACGGTGCACGTGAAACTAGCCGGGTAAAGGCGGTGGTCTGCTGGTGACCCTAATCAGATGTTCAACAAGTGACGCACACTCACCAGCCAATCAGAAAACCAATAAAACTGCCATGTCTCACAGAAAGTCTGATGGCTCCACATATGACCAGTCTCTTCTTATTCCGGAGAGCCGCTTCAACACAGTCCTTCAGCTGGACCAGTCGTCTGGAAAGTCAGCATCCAGCATCAACCTGTCCAGATTGGATTCTCCTGAGGATGAGCGCAGGACGGTAGTGCTCAGCACGCAGAGCGAAGCAGCCCGAAAGCGGGGCACTCAGCAGCTCATTCCAAAAAGCCTGGCAGTGACCAGCCGCCCAAAAAACCGCCACCACACCACTGTAGTGACCCTACCCGTGCCCCTACAGGCCTCGGAAATCGGCTGGGAGGACTATGACAGTGATGCAGGTGATGGCGTTTCACTCAGGAGAAATCGCAGGAATAAATCATATCGCGCTGCGATCACTAGTCTGCATCTCGACGGTGAACTTCAACCAGAAAGTCTTTCGCCGaGAACATTAGGAAGGATCAGGAACAGAAAGCATGCCGGCTCTTTTAAAGATGAGCCACGGTTTTATCAGGAAATCAAGGAACGAGGCCTTAACGTCAGCAGCTTGAGCACAGAGGAAGAGGAGCTTTCACCGGTGGGGCCACCAGGGGAAGATCAGGGCATAGTGGTGAAGAACTACAGGGCAGCGTACATCACATGGAGTCAGCTACCACAGGTGAAGGATTTGGGTATTTTGGATTTCATCACacctgaagagcgcaaaagacaAGAAGTCATCTTTGAAATCATCACGTCAGAATATTCCTACCAGCACAGTTTGAGCATCCTGGTGCGTCATTTCAAGGACAGCGTGGATCTGAGAAAGACCATGACTGCAACAGAGCACCATCACCTGTTCTCCAACATATCCGTCATCCAGGATGTCAGCAAACGGTTTTTTGAAGATCTGGATAAGCGTCACCAAGCAAACCCTGTGATCGAGCGCATCAGTGATATAGTGGCAACTTACGCAACTAAGCACTTTGAGCCATACATCGTGTACTGCTCCAACGAGACCTTCCAGCAGAGAACCCTCCAGAAACTACTGTCGAGTAACAGTGCGTTTCGAGAGACTCTGAAGCAGATCGAAACCAGTGAGGATTGTGGAGGTTTACCCATGCTCTCCTTCCTCATCTTACCCATGCAGAGAGTCACCCGTCTGCCGCTTCTGATGGATACCATCTGTGAGAAGACCACTAAAGAGACGGCTGAATATTATAAAGCCTGCTGGGCTTTTAAAGCTATCAGTAAGCTGGTGAAGAGCTGTAATGATGGAGCTCGGAGGATGGAGCGGACAGAGCAAATGTACACCATCCAGAAACAGATGGAGTTTGGCAAAATCAAGCCTTTCCCTCTGGTGTCGTCTTCTCGCTGGCTGAAGAAAAGCGGTGAGCTGGCTGTGTACACCGATGATCTCAGCATTTTCCGGAAGGCCTTCAGCTTCAAGAGCTACTACCTGTTCCTCTTCAATGATGTGCTCATCGTCACCAAGAAAAAGAGTGAGGAGAGTTATGTGGTGTTGGACTACGCCACTGTGGAGAaggtggaggtggaggaggaAATGAGCGACTCCAAACTCAATCTTAAACTGATGATGAATCCCAACAGTGACGGCCGCAGTGAACAGTTAGTACTAGTTGCAGAAAACAAGCTGGTCAGAGCGCAGTGGGTCACAGCTCTTCGAGATGTCAAGCAAACCAGCAGCATCGATAATGACGATTTGCCTCAGTATGAAGCTACCAAAGCCTACCTGCCAAAAGCGCCAGACGAGCTGAGCCTGCAGCAGGCTGAAGTGGTCATCGTTATACAGGAAGTGGAAGGTGTTGGTGTTATGGAGAGCGCATGAGAGATGGGGAGAGAGGCTGGTTTCCTGCTAGTTGTGCCACTCAGATCACCAACCGCACCGCCATGGAGAACAACATCCAGCGTATGGAGAGACTCCGCAAAGAGACCAACGTGTGAACCGAACCCCAGCCGCAGGACACTGTTTGTAGAGATGATTTTTAGACTAGTGTGAATCAGGAACTGTTAACAAACACCACTCGTACGAGA
>TCONS_00070470
ATGTCTCACAGAAAGTCTGATGGCTCCACATATGACCAGTCTCTTCTTATTCCGGAGAGCCGCTTCAACACAGTCCTTCAGCTGGACCAGTCGTCTGGAAAGTCAGCATCCAGCATCAACCTGTCCAGATTGGATTCTCCTGAGGATGAGCGCAGGACGGTAGTGCTCAGCACGCAGAGCGAAGCAGCCCGAAAGCGGGGCACTCAGCAGCTCATTCCAAAAAGCCTGGCAGTGACCAGCCGCCCAAAAAACCGCCACCACACCACTGTAGTGACCCTACCCGTGCCCCTACAGGCCTCGGAAATCGGCTGGGAGGACTATGACAGTGATGCAGGTGATGGCGTTTCACTCAGGAGAAATCGCAGGAATAAATCATATCGCGCTGCGATCACTAGTCTGCATCTCGACGGTGAACTTCAACCAGAAAGTCTTTCGCCGaGAACATTAGGAAGGATCAGGAACAGAAAGCATGCCGGCTCTTTTAAAGATGAGCCACGGTTTTATCAGGAAATCAAGGAACGAGGCCTTAACGTCAGCAGCTTGAGCACAGAGGAAGAGGAGCTTTCACCGGTGGGGCCACCAGGGGAAGATCAGGGCATAGTGGTGAAGAACTACAGGGCAGCGTACATCACATGGAGTCAGCTACCACAGGTGAAGGATTTGGGTATTTTGGATTTCATCACacctgaagagcgcaaaagacaAGAAGTCATCTTTGAAATCATCACGTCAGAATATTCCTACCAGCACAGTTTGAGCATCCTGGTGCGTCATTTCAAGGACAGCGTGGATCTGAGAAAGACCATGACTGCAACAGAGCACCATCACCTGTTCTCCAACATATCCGTCATCCAGGATGTCAGCAAACGGTTTTTTGAAGATCTGGATAAGCGTCACCAAGCAAACCCTGTGATCGAGCGCATCAGTGATATAGTGGCAACTTACGCAACTAAGCACTTTGAGCCATACATCGTGTACTGCTCCAACGAGACCTTCCAGCAGAGAACCCTCCAGAAACTACTGTCGAGTAACAGTGCGTTTCGAGAGACTCTGAAGCAGATCGAAACCAGTGAGGATTGTGGAGGTTTACCCATGCTCTCCTTCCTCATCTTACCCATGCAGAGAGTCACCCGTCTGCCGCTTCTGATGGATACCATCTGTGAGAAGACCACTAAAGAGACGGCTGAATATTATAAAGCCTGCTGGGCTTTTAAAGCTATCAGTAAGCTGGTGAAGAGCTGTAATGATGGAGCTCGGAGGATGGAGCGGACAGAGCAAATGTACACCATCCAGAAACAGATGGAGTTTGGCAAAATCAAGCCTTTCCCTCTGGTGTCGTCTTCTCGCTGGCTGAAGAAAAGCGGTGAGCTGGCTGTGTACACCGATGATCTCAGCATTTTCCGGAAGGCCTTCAGCTTCAAGAGCTACTACCTGTTCCTCTTCAATGATGTGCTCATCGTCACCAAGAAAAAGAGTGAGGAGAGTTATGTGGTGTTGGACTACGCCACTGTGGAGAaggtggaggtggaggaggaAATGAGCGACTCCAAACTCAATCTTAAACTGATGATGAATCCCAACAGTGACGGCCGCAGTGAACAGTTAGTACTAGTTGCAGAAAACAAGCTGGTCAGAGCGCAGTGGGTCACAGCTCTTCGAGATGTCAAGCAAACCAGCAGCATCGATAATGACGATTTGCCTCAGTATGAAGCTACCAAAGCCTACCTGCCAAAAGCGCCAGACGAGCTGAGCCTGCAGCAGGCTGAAGTGGTCATCGTTATACAGGAAGTGGAAGtgGTTGGTGTTATGGAGAGCGCATGA
>TCONS_00070471
AGCGAAGCAGCCCGAAAGCGGGGCACTCAGCAGCTCATTCCAAAAAGCCTGGCAGTGACCAGCCGCCCAAAAAACCGCCACCACACCACTGTAGTGACCCTACCCGTGCCCCTACAGGCCTCGGAAATCGGCTGGGAGGACTATGACAGTGATGCAGGTGATGGCGTTTCACTCAGGAGAAATCGCAGGAATAAATCATATCGCGCTGCGATCACTAGTCTGCATCTCGACGGTGAACTTCAACCAGAAAGTCTTTCGCCGGTTAGTGATGAGAAAGTGGTCAGCCCAAAGCAAGCGAACAAATCGGGACGCAAGaGAACATTAGGAAGGATCAGGAACAGAAAGCATGCCGGCTCTTTTAAAGATGcttagtccctttattagtctggggtagccacagtggaatgaaccaccaacttatccagcacgtttttactcagcggatgcccttccaaccgcaactgatctatgggaaacatccacactcactcattcacacacacactcatacactacggacaatttagcctacccaattctcctgtgccgcatgtctttggactgtgggggaaaccggagcacccggaggaaacccacgcaaacgcatgctccaaaacagtgacaagaTTCACGTTTAGAAGatgtaaaactgatataaacagctaaagcttgtagtttgtcacttccaacTAAATGGATCAACGGTAGATAGAGATAGATGAGATAATCAACGAGATAGTCATAACACGTTACTGCTGTG

Function

symbol description
arhgef16 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Orthologous to human ARHGEF16 (Rho guanine nucleotide exchange factor 16).

GO:

id name namespace
GO:0090630 activation of GTPase activity biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-081104-446 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in activation of GTPase activity. Orthologous to human ARHGEF16 (Rho guanine nucleotide exchange factor 16).

Ensembl:

ensembl_id ENSDARG00000077114

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070469 False 2231 mRNA 0.50 15 47099033 47143828
TCONS_00070470 False 1821 mRNA 0.50 15 47100863 47143622
TCONS_00070471 True 760 processed_transcript 0.49 3 47101040 47104645

Neighbor

gene id symbol gene type direction distance location
XLOC_035972 espn coding upstream 10505 46939391 ~ 47088528 (+)
XLOC_035974 BX000472.1 coding upstream 26696 47072220 ~ 47072337 (+)
XLOC_035973 BX000472.2 coding upstream 38518 47060401 ~ 47060515 (+)
XLOC_035971 FO704898.1 coding upstream 332488 46766429 ~ 46766545 (+)
XLOC_035970 NA coding upstream 389185 46708220 ~ 46709848 (+)
XLOC_035976 CR792439.1 coding downstream 10834 47154662 ~ 47159033 (+)
XLOC_035977 si:dkeyp-100a1.6 coding downstream 44326 47188154 ~ 47197872 (+)
XLOC_035978 mthfr coding downstream 75279 47219107 ~ 47252552 (+)
XLOC_035979 NA coding downstream 112280 47256108 ~ 47259810 (+)
XLOC_035980 plch2a coding downstream 198758 47342586 ~ 47622532 (+)
XLOC_035960 NA non-coding upstream 952331 46045163 ~ 46146702 (+)
XLOC_035989 NA non-coding downstream 873823 48017651 ~ 48018967 (+)
XLOC_035991 CR381598.1 non-coding downstream 1031480 48175308 ~ 48175423 (+)
XLOC_035992 NA non-coding downstream 1243744 48387572 ~ 48390135 (+)

Expression


Co-expression Network