RNA id: TCONS_00070485


Basic Information

Item Value
RNA id TCONS_00070485
length 4850
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_035984
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 47726919 ~ 47751940 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGTTATAAGTTATAGAGACCTCTTAAGTGGTGTTGCCGGTAATTCGGATCATTTCAAGTGCTCCACCAGATCATCAGCAGGTCACATTACAGACGACAAAAGGAGACCATGAGTGACTCTTCTGTTGAGCTTGAGGGTTGGGTGCGGATGTGGGAAAAACCTGACGGTATTTCACCGGCTGACCTCTCATGGGTGAAGAATGACACAGAGAGAGGGCTCTTCACCCACGTTCAGGTCTATCAGGACAGTACTGGTGTGCTGAAGAGGCGACGGGTGATGAAGTCCAACAGGATGTGGTTTTACCCCCCAGAATCTCCAGGCTACGTCAGCGAGACTGTGCCATCACCACACCTCTTCTTTCGGGGTCGCGTCTTTGTCTGGCGGCCCGTTGGAGTGTGGAGATACTCACTGAGGTGTCCTCGTGGTGAAGAATGTGCTGGTAGTGGAAAAAACCTGCACCTCTATCCGTCAGGATACCACAATAGGGTTTGTCAGATCTGCGATGTCGCCAATTGGTATTCAATGCTGACGGAGGTACTGCGCTGTGGGCCGTGCACCGAGGAAGGGAGGAAGAGTGATGGTGGCGAGGTGGGTCGTTGGTTGGCATGGGATCCTGCAATACTTTGTCAGCTCAGTGAGGCTCACCAAGCCATGTTCCCTGCAATTCTAACTAATGGGCGTGGTGTGGACAAGAGCGTGATACGGCTTCTGCGGGACTGTACCGAGATGCACACCATGATGAAGGTGTGCCGACAGGTTCAAGAAAACCATACGAAGGAGTATCTCCAAAGGAAGGATCTGTACACCACCCTCCTGATGACTCTGAAAAAGCCTGGTGGGATTGTGTCAGCCTTTAAACACAAGTTTGAGGCTCCACCTCCTCAAAAAGAGCTGCCTTCTGCTCGCCTACTTCGCCATGCATTCCTGCTCGCAGAGGCCGGCAATATGCAGGACTACACGAACCAGATTCTGTCCACTTTTGGCACAGTGGTGAAAATGGACTCAAAAAAGGTGTCTGGGGAAGCTGAAGGCTCCGGGGAGTGGTTCACCAGCATTGGCAATGAGCACTCACAAATAGTCTCATTTGTTGTAACGTGTGACGAGTCCACTGAGTGTCTGAAGCCCATGTGTCAGGGAATTATGGACCGGTTCCAGCAGGCCAGTCAACCTGTCCCGAAGATCCTGTATGTTGACCGTGGGTGCTGTTGTGCGCAAGGCCCAACTGCTGTGGAGAATTTGTTCCAGACATGGGTGGACGGTGGTATGGTCATCCGTTTGGACCTTTTCTATTGGATTCATTGCTTTGATGCAGCCATTCGCACAGACAGCCACTCAAAGTACACAGTGTTCAAGTCTGCCCTTGCAGGAGCGGTGCTGGCTTACAACCGTGCAGACTTACAGCTGCTCATCAAGGCTGTCAGAGCTCAGGACCTGAAGGCTTTTGACAGCGTAGCTGATGAAGACATGGTGCGGCTGTATGTTTCGAGAGAGCAGCTGAAGCACCATGTTCGGAGAGTCACTCTTGGGGCTCAGGAGACCTTTCAGCTCATTCAGAGGGCCATAGATGAGCTCAAGGGTCCTGCTGGGATGGACCAGAGTGGAGTCAGTCTCTTTAAATCAACAGAAGCAATAGATGGCGTGTGGGAAGCGCAGCAACGACACCTTGAGTGCATACAGGATCCGCCAGAGATGAGCATGTACAGAGTGGCTGGTACCGCCAACATCAATGGGGTGGACGTTCCATACTATAAGTGTCTCCGTGGAAACAACAGTCTGGAGGGGTTCTATAAATCTCTGCCTCACATGATCCCAGGGTCTCGCTCTACACGCGCTCTCAATGTTGTTGTCTGGTCACCCAAAGAGAGTCCAAGACCACTACTTGTTACTGTAAAGGACTCTTCAAGCCCCCACTGTGCCGCACATCCATTTCATGTGCACCTCATCAGCAGAATCGCTCGCTGGAACTCAGAACAGAGTCCTCACACAGTGTTTGGTGTCAAACACCAAACGCACAGATCCTACTCTGGGCCTCTGATTGAACGTCTCAACACCCGATGCCAGCAGTTGTTTGGAGAAAATGTGGAGGAGAATATCCATGTCCCCGCTGCTGTGACGTCAAACGAGCGGCTCGGTTTGGATTATCTATTCAGCCAAAGCACGGGTGAATCTGGAGGCTTCACCCTCACTGACCTATCAAAGTACGCACCCAGTCCAGAGGAGGAGGTGATTGAGCCAGGCCAGGCTGACCCAGAGGAGGATGACGAGGCATACCAGAGTGACCCAGAGGCAGATCAGGATGTGGTCACCGTTGCTCCAGCACACTTAACTCTAACCACCAATGAAACTACCACTGCTCATCCTCCGGCTTTTGAGGATGCTTGCAGCTCCAACCCTCTTCCAGGATTCCAGCAGCTGGAGAGATTCTGTTCTCTGCTGGCTGACATTGGCCTCTCTGAGACCAAGCTGAGCCTGACGCCGTATCAGAGGAATGGGATAATTGATGCGTGGGATGCTGTGGAAGACCATGACAAGCAGCCGCATAAGTTTCTCCAGCAGTACAGGACCCGCTGGGGCAATACACTGTATTGCAGAAGAAAGAGAGACGATCCTGAAGCAGCCATCAATCCCAAACACTATCCGGACATTCACAACAGACTAATGTACACGCTGGTCAAACTTCTGTGGCTGGGTTTACCTCACAGTGACAGCAGAACAAGAGAACTTGAGAAAACATCCATCCTAGAAACCTATGACAGAATTAAGCACTTCATATTGGTGGAAGATCCGGTTCTGTGTAAAGTGGGTATTCCTCTACCTCAAATTACCTTGAAGACCATATGTGAAGTCATTCGCCATCAAGAGACGCTGATCAACGTGCACCCAACAAGAATGCCATCCTCCATGATATTAAAAACCGAACCGATCTCTCTAGAAGATTCACCTCCAGCACCATCTCAGCCATCAGGTCTTCCTCATGAATCCCCAAAGATGAAGAACCAGCACATTCCCATCAAAGAAGAGACTAAGGTCTTGAAGAAAAGATCAGACGCTGTAGTGCTAGCTCCATTCCACCCTGAATCTCACTTGCCCCATCAGACAAATGTGGCCTTGTCAACCATCCTCAGACCTCTGAATCCCAGAATCCTTTCTACCCACCCTTTTACACAAGTGACTCCAGCCTCTGACAGGACACATGTGACTAAATCATCCAGCCAGCCTGATTCCCATCCATCCTGGTCCCGAGCCACTATTTACAAAAGGAAACACAAAGACACGCTAACTCAAGTTGGAGCCAAGCAATCTCGTGTTCACAACTTGCCCATTTGCACACTTTGCCAGAAGCCTATGCAGGggcataaaaaatacaaaaagaagaATTTTTGTCCTGTCAAAATGATGTCTCCCTCTAAAGGATTGGACAACAGGGTGTTCAGCAGTTATGAACATTTTATGACCATCATAGAAATgatgtagggctgggcaattgTTCGAAAAGAACAAGGGTTGGCGTGGATGGAGGTGACGTATCCCTAGCTGTAGCCACTGATTATTGAATTGTCACAACCAGGgtttaatttgtgccggaacactctggatccggcacctctgaaatatGAATcaggcacctcattttaccgatccccctcatCAACTCGACTCCCCAGCCCTCTCCACTTTCGCCTGCTACAACCCCCTTCTCTCAGCTTTTTGTGCGAGACACCTGTCCCTCCAccgggtaacatgccggatccgttcCACCGATTTGTTCTGTGACCCCGCAATTTACAAATTAGGCCCTGGTCACAACCAACAGTGTATTCCCCTCCAAAAAAATGCTTTGTCAAgtcactaaagcctggtttatacttctgcgtcgagtgatcggagtaacccacggcgcatgcaatgcacGTAGCCGTGCATTCATACTATTGCATGCTGTtgctgttgctctgcaataccacttccgaaacgctaggtGGCAGTAAGTTGTTTATGTTCCTCTATATCAAGTTTCTTCTCTGGTGTTTTGtatttctgaacgcttccttaatgtacaagtggctcaaactcgctcattttggggcaggaaccggcggacgtgcaacaactttgaccataagttaaacacaaaacaaaactttccatccggtgCTCCTTcaagggactccacacttgtaaacaatcgctccatcaggctcgcgcgGTTCTTgttcccgcccacactcgtcaacgATAATaagccgactaatcacagagcttgcgttatGCATTGTTGCGACTGAAGTATGAGAGACCAGGAAAAACGgtaatgttggcaggtatggtcatCAGTTGTATTCTACTGGGTGACAAtgttcactcaatgttctataaATCATAGACTAATCTACAATGGTTTTATAAACAGAACACTATAGCCGGAAGTTTGGTGCAAGAAAACATGGTGAACTTTAgaataaactttaaaatgtgtATGACCTCTTGAAACATGCCTGCACTGCCTTTTATTTGCATCCGTTGAGTTGAATGCTCTTTTACGACGTGAATGGACATGTTTGCTTAAGAAAACAAAGAGTAACTGGTGTGATTCTCAGCATTCTCCTACAAGGCTGTCAAGTGGTTACCAGTGTGCGAATTATGCAAGACAATGGGGGATCTGTAATGTTAGTGTTTACATCTGAATTATTCAGTAATCTTATTTCGGTTTTCAGTGTTGTGAATGATATTGAGTGTTTTTTGTAAAGTAAATAGGTTTTGTGCAAGGTGTTATTTCTTtgttatatacactacctgacaccactcttgttgttgatcccacctgtaagagcaataaataataactt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-202 No description available

Ensembl:

ensembl_id ENSDART00000160166

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072274 lncRNA upstream 467109 47256108 ~ 47259810 (+) False XLOC_035979
TCONS_00072275 lncRNA upstream 467109 47256111 ~ 47259810 (+) False XLOC_035979
TCONS_00072276 lncRNA upstream 467109 47256561 ~ 47259810 (+) False XLOC_035979
TCONS_00072277 lncRNA upstream 467109 47256925 ~ 47259810 (+) True XLOC_035979
TCONS_00070472 lncRNA upstream 567886 47154662 ~ 47159033 (+) True XLOC_035976
TCONS_00072278 lncRNA downstream 65843 47817783 ~ 47819452 (+) True XLOC_035986
TCONS_00072279 lncRNA downstream 265711 48017651 ~ 48018967 (+) True XLOC_035989
TCONS_00072280 lncRNA downstream 635632 48387572 ~ 48390135 (+) True XLOC_035992
TCONS_00070499 lncRNA downstream 762635 48514575 ~ 48527546 (+) True XLOC_035995
TCONS_00070503 lncRNA downstream 857584 48609524 ~ 48610396 (+) True XLOC_035998
TCONS_00070482 mRNA upstream 3375 47683352 ~ 47723544 (+) False XLOC_035982
TCONS_00070481 mRNA upstream 3375 47683352 ~ 47723544 (+) False XLOC_035982
TCONS_00070480 mRNA upstream 4854 47677208 ~ 47722065 (+) False XLOC_035982
TCONS_00070483 mRNA upstream 5469 47683539 ~ 47721450 (+) True XLOC_035982
TCONS_00070484 mRNA upstream 28449 47698098 ~ 47698470 (+) True XLOC_035983
TCONS_00070486 mRNA downstream 52344 47804284 ~ 47811955 (+) True XLOC_035985
TCONS_00070487 mRNA downstream 65514 47817454 ~ 47819141 (+) False XLOC_035986
TCONS_00070488 mRNA downstream 98133 47850073 ~ 47895817 (+) False XLOC_035987
TCONS_00070491 mRNA downstream 145794 47897734 ~ 47948903 (+) True XLOC_035988
TCONS_00070492 mRNA downstream 343971 48095911 ~ 48242997 (+) True XLOC_035990
TCONS_00070478 other upstream 106128 47607809 ~ 47620791 (+) True XLOC_035980
TCONS_00070471 other upstream 622274 47101040 ~ 47104645 (+) True XLOC_035975
TCONS_00070468 other upstream 654582 47072220 ~ 47072337 (+) True XLOC_035974
TCONS_00070466 other upstream 662908 47054645 ~ 47064011 (+) True XLOC_035972
TCONS_00070489 other downstream 98213 47850153 ~ 47855121 (+) False XLOC_035987
TCONS_00070490 other downstream 130036 47881976 ~ 47884038 (+) True XLOC_035987
TCONS_00070493 other downstream 423368 48175308 ~ 48175423 (+) True XLOC_035991
TCONS_00070494 other downstream 638622 48390562 ~ 48390678 (+) True XLOC_035993
TCONS_00070498 other downstream 762611 48514551 ~ 48527546 (+) False XLOC_035995

Expression Profile

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