XLOC_036009 (ddx51)


Basic Information

Item Value
gene id XLOC_036009
gene name ddx51
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49065348 ~ 49089382 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070518
GAAACCCACATGGCTAATGTACAGTGcatatttttatctttaaaacctGTACATAAGTAAAACAGTTATAATAATTTGTAAGTAAGCGAATTAAAGGATTAAGCGCAGCTGACAAGAGTCCCTAAAATGGCGCTATTTACGATAAACAGGTATTTgggggaggaggaagaggaggacagTGAAAAGCAGTCTCGCTCCAAAGCTTTACTGGCTAAACTTCAGAAGCAGGTCAAAGCCAGGGGACAGCAGAGCGTCTCAAACACACCTAAAGAAAAAGAAGAGCAGCAGGATGAGAaagaacagaagaaaagaaaacacaaactGCAAGAGACGAAGGGGAAAATAAAGAAGAGTGAAAGTGTTCAAAACACAGATCCTACTGAAGAGGCTGACAGTTcagtgaaaaagaagaaaaaacgcAAAAAGTCATTGTCCACTGAAGATGTTATTGTGAAAATAGaagagAATGAATCAGAAAATGAGAAGTCTGTAGACATCACAGGACCAACTCCCAGCAGCCCAGTGCAATTTAAGGCTGAAAAAGCAGAGGAATTAACCAGCAGCTTTCAGAGCAACTATCAGGTCCTGGGTGGATTCAAAGAGAAGGATGTGCAAAAgGTCAAGAGAGTGTTGCCCCAGTGGTTGTCCCAGCCTGATGTCATCCAGAAAGACATTAAGAGTAACCTCATTCCTATCAGTGAGGTGCCAGGCATCTGTCCCACACTGCTGAGGAAATTACAAACTAATGGCATACAGAGCTTCTTTCCAGttCAAGCTGAGGTCATCCCTGCCATTCTGGAGAGCGTTGGTTCAGGGCTGCTGGTGGGTCCAGGGGGCTACAGACCCAGAGACGTCTGTGTTTCTGCACCTACAGGAAGCGGGAAGACCCTGGCCTTTGTCATTCCTGTTGTACAGGCATTGTCCAAGCGTGTGGTGCGTCAGGTCCGTGCACTCGCCGTCCTGCCTACCAAAGAGTTAGCACAACAGGTGTCGAAGGTGTTCAGCGCATACACTGAGGGCAGCAGTCTGAAGGTGGTCATGATCACCGGCCAGAAATCGTTCGCGGCAGAGCAAACGGCGCTCTCGGAAATCAGgggagGTGTTAGCCACAGTTTGGCTGATATTGTGGTGGCCACACCGGGTCGACTGGTGGATCACATCAACAAAAACAGCAGCTTCAGTCTACAACATCTACGCTTCCTGattATTGACGAGGCAGACAGGATGATTGACAGCATGCATCAGTCCTGGCTCAGCCAGGTGACTAAAGCAGTGTACAGTACCCCAGGAGAGACACACACGTCTGTCTTCAGGAGGACAGTGCCTGGACCAATCACAGCGGCAAGTCTGTCTCCGCCTCAGATTCCTCTGCAGAAGCTGCTGTTTTCCGCAACCCTCACCCAAAACCCGGAGAAGCTGCAGCTGCTGGATCTGCATCAGCCGCGACTCTTCAGCTCCACACACTCCCTTACAGACAACCCAGCACAAAGCCAGGACACTTTTCACTTCCCTCAGGGCCTGTCGGAGTATTACGTCCCCTGCACCTTCAGCAAGAAGCCGCTCATCATCCTTCACTTCCTGCTGCGGCTCAAGTTCAGTCCTGCTCTGTGCTTCACCAACTCCAGAGAAGGAGCACACAGACTGTATTTGCTGGTTAAGTTGTTTGGTGGTGTGGAGGTGGCAGAGTTTTCCTCTAAACTGAGTCCAGGCGAACGTCAGAAGACACTGAAGGACTTTGAGAAAGGGAAGATCCCACTGTTGATAAGCACAGATGCTGCCGCCAGAGGGATTGATATCAACGGTGTAAAATGTGTCATTAATTATGATGCTCCTCAGTACATCCGCACATACATCCACAGGGTGGGCAGGACAGCGAGAGCAGGCAAAGCTGGCTTGGCGTTCACCTTCCTTTTAAAAGTGCAGGAGAAGAGGTTTTTAAAGATGGTGTCAGACGCTGGCAGTCCTGGCATACAGAAGCAGCACGTGCATCCAGAAGCCCTAAAAAGCATGGAGAGCCGCTACGAGCAAGTGTTGGCTGAGCTGGGGACAATTGTGAAGgAGGAAAATGAAAAGAAGCGTTTTTGAGCAGGAAGTGAGCAGACCTTTGCCTTTGCCTTTGACTTACAACTTCATACAGTGTCTGATCTATAATGTAATAAGCTAACctttacatgttttaataaaatatggcaaaaagCT
>TCONS_00070519
CAGACTGTATTTGCTGGTTAAGTTGTTTGGTGGTGTGGAGGTGGCAGAGTTTTCCTCTAAACTGAGTCCAGGCGAACGTCAGAAGACACTGAAGGACTTTGAGAAAGGGAAGATCCCACTGTTGATAAGCACAGATGCTGCCGCCAGAGGGATTGATATCAACGGTGTAAAATGTGTCATTAATTATGATGCTCCTCAGTACATCCGCACATACATCCACAGGCAGGGCAGGACAGCGAGAGCAGGCAAAGCTGGCTTGGCGTTCACCTTCCTTTTAAAAGTGCAGGAGAAGAGGTTTTTAAAGATGGTGTCAGACGCTGGCAGTCCTGGCATACAGAAGCAGCACGTGCATCCAGAAGCCCTAAAAAGCATGGAGAGCCGCTACGAGCAAGTGTTGGCTGAGCTGGGGACAATTGTGAAGgAGGAAAATGAAAAGAAGCGTTTTTGAGCAGGAAGTGAGCAGACCTTTGCCTTTGCCTTTGACTTACAACTTCATACAGTGTCTGATCTATAATGTAATAAGCTAACctttacatgttttaataaaatatggcaaaaagCTCAAAATTAAAA

Function

symbol description
ddx51 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human DDX51 (DEAD-box helicase 51).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040927-28 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human DDX51 (DEAD-box helicase 51).

Ensembl:

ensembl_id ENSDARG00000025854

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070518 False 2199 mRNA 0.48 16 49065348 49089371
TCONS_00070519 True 573 mRNA 0.45 5 49081196 49089382

Neighbor

gene id symbol gene type direction distance location
XLOC_036008 NA coding upstream 1502 49061001 ~ 49063846 (+)
XLOC_036007 aak1a coding upstream 21089 48965767 ~ 49044259 (+)
XLOC_036006 rer1 coding upstream 103943 48942470 ~ 48961405 (+)
XLOC_036004 tp73 coding upstream 129872 48848200 ~ 48935476 (+)
XLOC_036005 NA coding upstream 154520 48910307 ~ 48910828 (+)
XLOC_036010 zgc:56525 coding downstream 2657 49092039 ~ 49115695 (+)
XLOC_036011 rad21l1 coding downstream 28124 49117506 ~ 49140645 (+)
XLOC_036012 snpha coding downstream 60525 49149907 ~ 49155185 (+)
XLOC_036013 NA coding downstream 111930 49201312 ~ 49207469 (+)
XLOC_036014 NA coding downstream 132732 49222114 ~ 49231343 (+)
XLOC_036002 NA non-coding upstream 313072 48750253 ~ 48752276 (+)
XLOC_036001 NA non-coding upstream 318705 48731449 ~ 48746643 (+)
XLOC_036000 BX323876.1 non-coding upstream 372094 48691469 ~ 48693254 (+)
XLOC_036015 NA non-coding downstream 219254 49308636 ~ 49310816 (+)
XLOC_036016 BX537103.1 non-coding downstream 289508 49378890 ~ 49380303 (+)
XLOC_036019 NA non-coding downstream 527114 49616496 ~ 49623714 (+)

Expression


Co-expression Network