CI01000050_05413540_05419241


Basic Information

Item Value
gene id CI01000050_05413540_05419241
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5413510 ~ 5419241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05413540_05419241.mRNA
AGAGATCTGTCGTGAGGAATCCTTGTAATTGTGCCCTTACAAGGTGTCAGTCCTTACCCATGTCGCTCCCAGTGAACCGAAGGCCATCTGCTGGTTCCCGCAGACGGCAGGCAAAGTATGCAACCTGTAGTGAGAATCACGGGATCCGTCCACCAGCTCCTGAGCAGTATCTCACCCCACTGCAGCAGAAGGAAGTGTGTATTCGTCACTTACGAGCTCGGCTGAAAGAAAATGTAGAGAGGCTTCAGGACCGAGACTCTGAGATCGAGGAGTTACGGATGCAGCTGACTCGGATGCAGGAGGACTGGATAGAGGAGGAATGTCATCGCATAGAGGCCCAGCTGGCCCTAAAAAAGGCCCGGAAGGAGATCCAGCAGCTTCAGCAGGCTGTTGAAACAGTTAGGTCCAATCTGGGGGTCCATGAGGCAGAACAACAGGACTGTAAGTCTGAAGGTCTAGGTGTCGGTAGGATAGGCCAACGAATTGGGGCGTCTAGGTCTTGTGGCTGCTCTCCAGCCCACACCATGAGTCGCAGCGCCACCTTCACCAGGCTGAGCAGTGATACGTCACCTTGTGCTACAGATCGCAATGGAAACGTACTTTCCGATCGCTATATTCCCGCCAACAGAGGGGCAATGACGTTACCGAGGGGTGACGGACGTACTCATCTACTTCTGGAGGCAGCTTTACTGTCTGAACAAGTTCCTCACGCAACGCTATGCTCCACTTTGTCGCGATCATCCACCTGCGAGAGATTGTGCAGCGGAGAGACGGTGTTGCCCGTTAGTCGATCCTGTCATGCTATTAACAACAACTGTAGCTGTGGTCCACATGCCTACCTCCCACACCACCATCTGTTTCTGCACCTCCCACAGGAGGAAGCACCACCTCCTCCACCTCCGCCTCCTCCTCCAGCACCGCCAACAGCACCCCCTAGTGCATCCGAAGTAAGTGACAGGCCAGGGTACCGCTCACAGGCCTGCAGCCCCACCATAACCTGGATCTCCGAAGAGGGCGGAGGAGAGGAATTGAGCATCATCGCTTCAGCAACTTGCGCACCAGACGTTACTTTAGCTGAACCACAGGTGTTTTCGCCATCCTCGGCCACTACTTCACCTGCACAGATGTCCTACATCACAGAAACTTTACCGCTAGACAGCACAGTTGAATTTACATCATCAACAGCAACACCAACAGTGTTGACCAAGCCACAGGTTCAGCAACCTTGTCCCAGAGCGTCGCCACCTCTCGAGCTGCCACCACAGGAAACAACCGTAGTAAAGGTCAATGATGAAGATGGAGTGGGGGAGGATGCAGAATCAGCTCCCCCTCAGAGGAGCCACTGGAGCCGCTATTTCCTGATCGACCTTATAGCGGTGGCCGTTCCCGTAGTTCCGACATTGGCGTGGCTTTGCCGAGGGTCACGAAATGAAGGCATGCCCATGTACAACATGGGCTCCCTGTTACGCGGCTGCTGTGCCGTTGCACTGCACTCTCTTAGACGGGTTGGCAGTGGCTGTGGTCGCGGCCCCTCGGGAACAGGAAGAGCGACACCTATCTGATAACCCTAGCATTACCATACCATCAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05413540_05419241.mRNA True 1592 mRNA 0.55 3 5413510 5419241

Neighbor

gene id symbol gene type direction distance location
CI01000050_05275592_05286286 NFU1 coding downstream 126893 5275568 ~ 5286617 (-)
CI01000050_05206986_05209502 NA coding downstream 204008 5206534 ~ 5209502 (-)
CI01000050_05128945_05154128 RASEF coding downstream 258998 5128167 ~ 5154512 (-)
CI01000050_05008397_05010031 NA coding downstream 403470 5007741 ~ 5010040 (-)
CI01000050_04943326_05005151 NTRK2, NTRK2A coding downstream 408359 4943270 ~ 5005151 (-)
CI01000050_05428643_05444772 RAD21L1 coding upstream 9346 5428587 ~ 5444859 (-)
CI01000050_05446323_05446794 NA coding upstream 26576 5445817 ~ 5446794 (-)
CI01000050_05461249_05502636 NA coding upstream 41231 5460472 ~ 5502886 (-)
CI01000050_05532863_05535400 NA coding upstream 113330 5532571 ~ 5535437 (-)
CI01000050_05576253_05586558 NA coding upstream 156730 5575971 ~ 5586558 (-)
G216013 NA non-coding downstream 3505 5408935 ~ 5410005 (-)
G216018 NA non-coding downstream 7472 5404452 ~ 5406038 (-)
G216072 NA non-coding downstream 9286 5403869 ~ 5404224 (-)
G216071 NA non-coding downstream 9858 5403383 ~ 5403652 (-)
G216070 NA non-coding downstream 10410 5402442 ~ 5403100 (-)
G216084 NA non-coding upstream 38867 5458108 ~ 5458398 (-)
G216114 NA non-coding upstream 106814 5526055 ~ 5527796 (-)
G216130 NA non-coding upstream 169309 5588550 ~ 5589288 (-)
G216149 NA non-coding upstream 215032 5634273 ~ 5637567 (-)
G215935 NA other downstream 340401 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 800618 4563687 ~ 4581278 (-)
G214436 NA other downstream 1824453 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 1902719 3491088 ~ 3514757 (-)
G214314 NA other downstream 1989253 3413448 ~ 3424257 (-)
G216093 NA other upstream 70316 5489557 ~ 5552103 (-)
G216408 NA other upstream 936776 6356017 ~ 6356511 (-)
G216931 NA other upstream 1744854 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036012 snpha coding NC_007119.7 CM002892.2 49149907 ~ 49155185 (+)