G216149


Basic Information

Item Value
gene id G216149
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5634273 ~ 5637567 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU245198
CAGTAGTGTAGAACATGCAATGTTAGACTTTTAACATGTTAGGGACTGCTAGCATGTTGTTAGCAAGTGTTCTGATGGTAACAAACCATAGTCCTGAAAAAGGTGATGGTTACCTTAAAATGTCTGTGCCATTAAAACAGTACAGGAGCTTTAGTGTCTAGAACTGTTAGCGTTCACATACTTATGCCGAGTATGTTTTGGCCCTTAGAAGTTGCATTTAAAGTTTTCTCATGCACGTTTACATTAGATTTAGATTATCCTGCAAAGTTCTAGACAGGCAACATCACAGATAAATGTATAAACTGCTGTAAATGAACACACATTTAACAGATGTTTCCCTTTGCAGTCGTTATAATCTGTCACAGTATTAATCATCTTGAATTTCATTCCTCTGTGATGTTCTTTGATCCTGTCATTTATTTTTTCCTGTCATTCTGTCTCATCTCCTTCCTTTTTGTCTTTTTTTTTTTTTATTTGTTTGTTTGTTCATTCATACCCCTTGCTTCTTTTCTTTGCTTTTTGCTATATCTGACATACGTGGGACACTTATTATGCCCTGTACTACCAATATAGTGTAAATTTAATATTTATAATTTCGATCCAGTTATGCATTGTCCCCTTTTAAAACACATAAAGGATAAATGCAATCTGTAGATGAAAAGGAAGCATGCATCATATTGAGGGTAAATTAGGCTGTGATGGTATAGGATGAATGTAAAAACTGAGAATCTGTGTAAATGTGTATTATTCTCAAGATAAATATTATAAGATAAAGATTATTTATCTGTATGTTAGAGCACAAAGTTGTCAAATTTGCTTTTCTGTCAGTTGGATTTTCTTTTGTCACATTTTGCCTGTTGAACTTGAACAGATCAGAATATCAGAGTTCTGAAGAAATTCAGTGTTCAGTAACATTTCATCCATCGAGCTCTAAATGATAAATGTAAATATAAGCTGTTCCAAAACCTCATGAGCTGTGCCTGTAGGCAGCATTTATTTTTATCCATTACCTCCTTGAATAACCTCTATTTTGAATCTTAATCTCTTAAAATTTCAATAAGACAGATATGTTTATTTTGTAAGTTAACTGTGAGTAAATGTGTTTGGACTGAGCCTATGACGGTCTGCTCCTCCTGAGGTCTCGTCTGCCATGTGACGTTTACCAGAAATGAGAGATTCAAATAAAACACGCAATGATTCATTCAGTTACATCTGGAAAATCTAACCTAAATAAGTAATTGTGCTTTTCAACAGGCAATACCAAAATTGACAGGGTCCTCACAGTTGTGGAAAAACTAGATTTTAAAGTTGTGTTTACTGGGCCTGGAAGTCATGTATATTACCACAGTGAATTGTTTTTCCTAGATACGCCTAACTAGTACTTCATCAGCTAGATATTGCTCTTCTATAGACTAATTGTGATGTCCAAAGACAGCGTTCAAACTAGTTCACAAATCAGCCTGAATGGTTCATTTGCTATCGTATGAATCAAACTAATTTTTAAAAATCCTTTCCAGAAATCACTTGAAATGTCGTGGAAAAGTGACGGAAATTCATTGGACAAAAAGTGCGCAACCCTTTATCTAGAAAGCAGGTCTTTCACTCTTAAAAATAAAGGTTCTTTATTGGCATTTATGGTTCCATGAAGAACCTTTTAACATCCATGGAACCTTTCCATTGCATAAAAGGTTCTTTATAGTGGAAAAGCACTCTTTAGATTTTTAAAATTTTCTTCACACCAAGAAAAACACCAAAACGTTTTTTTCACAGCAAAACCTTTCATTGAGATTGGCTCAATGAAAGGTTCTTTAGGGAATACTAAATGGTTCTTCCATGGCATCACTGCGAAAACCACCTTTTGGAACCGTTATTTTTAAGAGTATATATAAAGCTGATATTAACAAATTGAGACATTAAAATGACTGACATTAAATAAACACTTACTTACCTCCAGATGCACTCAAAATTTAATAAAAAGTTGACAACAGAAATACCTTATCCTTCAAGTGAACTTTTCAACAATTGTCAATATCTCAGAATGGTCAAATATTGGCCTATATATCGGACTATCACTATCTTGAAGCTGACGTTAAAGTGGTGTCTAGGCAGCACATATCAGACATGTCGACACTGACTCTTCACAAATCTTTACAAAGTCACATTTTACAGACACATATCAAACATAAAACAGCTCAATTTAAGAAATCATGTCTGTATGTATATGTATGATGTTTGAATTTTCATAATTAGATGTGCGGAAGCAGTAATAATACACAATTATTTATTTTGAGATGTAACTTCTTATAGTGTACTTCAATGTTTTTTGTTAAATGCTAAGAGTATTGTTTTATTTTGAGTCATTGTTTTGTCCAAAGCTTGTACAAATGTTGCATCAGTAGAACATTGTTGTGTAATATTCAACCCGATCTCATGAGAATACGTAACTATTTTACGAGTTGGTGATTTCGTATGAAATTGTACAGTGTGATTCATATGGAAACACACGATTTTTAGAAAAATATAAAACAAGCAGGACGGTCCACCCCACCTTTAAACCAAACCGATCTCATGGCAGTTTGTACGTGTTTTACGAGGTGGCTAATTCGTTTGTACGAATTAGTACGTTTTTTTTTTCAAAATCGTACGTATTTTTTACGAATTGTCAAATGCGCATGAATTTGTATGAATGACCTACCCCTAACCCCGCCCCTAAACCTACCCATCACTGGGGTTTAGACAAATCGTATAAATTCATACGAGTGAGGTCGAACAAATTAGCCACCTCGTAAAATATGTACAAATTGGTCGTGAGATAGCGTTGTTTAAACCTTACCATCATTGTGACATAAGCAGATCGTACGAAAACCTATGAATGACATTGTATGAATTCTTTCGAATTAGCCAAATCATAAAATGGTCACAAATTACCATGAGAGTGTGTTGTCAATATTATGTTTATGTGACTGTTTTCTTTGTTGTCAGTTTCTCTTTTCTTTTTCCTCCCTTTGCTTGTTTTACTGTGGCTGACCTATGCAATCTGACTGTAGTGCTCATAGTACTCTTATGCACCTAGCGGTGCGGCTAAGTAGTCTGACGTTGAAGTCTTTATTGTGTTGTAGCGTGTATTACAGCCCATGTCAGGAGAAAATAATGACAACAACAAAAAAGTCTTATCTATACTGGAATGCCATCACTTCATCCTTTTTTCTTCATGTTATCGAGCACCGTATTCCTTCTGTTTTTATGCGACAGTGAAAATTCTGAAAAGGAGGATATTAAATAAAAATGTCAATGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU245198 True 3295 lncRNA 0.34 1 5634273 5637567

Neighbor

gene id symbol gene type direction distance location
CI01000050_05607855_05619301 NA coding downstream 14972 5607228 ~ 5619301 (-)
CI01000050_05596597_05600160 NA coding downstream 34077 5596421 ~ 5600196 (-)
CI01000050_05576253_05586558 NA coding downstream 47715 5575971 ~ 5586558 (-)
CI01000050_05532863_05535400 NA coding downstream 98836 5532571 ~ 5535437 (-)
CI01000050_05461249_05502636 NA coding downstream 131387 5460472 ~ 5502886 (-)
CI01000050_05654964_05705049 AAK1, AAK1A coding upstream 16224 5653791 ~ 5705049 (-)
CI01000050_05717074_05720876 RER1 coding upstream 78987 5716554 ~ 5721127 (-)
CI01000050_05728696_05760342 TP73 coding upstream 90898 5728465 ~ 5760804 (-)
CI01000050_05766242_05770223 NA coding upstream 128229 5765796 ~ 5770223 (-)
CI01000050_05800641_05808346 TPRG1L coding upstream 162437 5800004 ~ 5808346 (-)
G216130 NA non-coding downstream 44985 5588550 ~ 5589288 (-)
G216114 NA non-coding downstream 106477 5526055 ~ 5527796 (-)
G216084 NA non-coding downstream 175875 5458108 ~ 5458398 (-)
G216013 NA non-coding downstream 224268 5408935 ~ 5410005 (-)
G216167 NA non-coding upstream 138640 5776207 ~ 5786023 (-)
G216146 NA non-coding upstream 157813 5795380 ~ 5798225 (-)
G216187 NA non-coding upstream 177736 5815303 ~ 5815538 (-)
G216180 NA non-coding upstream 201659 5839226 ~ 5840157 (-)
G216176 NA non-coding upstream 202685 5840252 ~ 5841706 (-)
G216093 NA other downstream 82170 5489557 ~ 5552103 (-)
G215935 NA other downstream 561164 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 1021381 4563687 ~ 4581278 (-)
G214436 NA other downstream 2045216 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 2123482 3491088 ~ 3514757 (-)
G216408 NA other upstream 718450 6356017 ~ 6356511 (-)
G216931 NA other upstream 1526528 7164095 ~ 7165401 (-)

Expression


Co-expression Network