CI01000050_05607855_05619301


Basic Information

Item Value
gene id CI01000050_05607855_05619301
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5607228 ~ 5619301 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05607855_05619301.mRNA
GTATTTAGGGGAGGAGGAGGACTGTGAATCTAGCAGAGAGTCTCGATCCAATGCTTTGCTGGCTAAACTTCAGGAGCAGGTCAAAGCCAGAGAACAGCAGAGCTTCTCAAACACGGCTGAAGAGGATAATGACCACCATCAGAGTGATAAAGAACAAAAGAAAAGAAAACGGCAAGAGACTGACGGAGTGCAGCGTAAAACAAAGAAGAGTAAAAATGTTAAAAAAACAGATCTTAATGATGAAGCTGCCAGTTCAACTAAAAAGAAGAAAAAACACAAAAAACAAAAAACATTGTCCAGTGAAAATGAGAGCGTCAATACAGGAGATAATGAATCGGATAATAAGAAGTCTGTAGAAATCACAGAAACAACTGAAAGTGACCCAGAGGAAAGTAAGAAGACTGAAAAAGTTGTGGACCCTCAGATCGATCAGATCCAAGCAGAGACAGGAAACAGCACCTCCCAGACTGCCTTCCACATCCTGGGAGGATTCAAAGAGAAGACAGTGCAAAAGGTCAAAAGAGTATTGCCTCAGTGGTTGGCACAGCCTGACGTCATTCAGAGGGACATGAAGAATAACCTCATTCCCATCAGTCAGGTGCCAGGCATCTGTCCGATATTGCTGAAGAAATTAGAGGATAATGGAATACAGAGCTTCTTTCCAGAAAGCGTGAGCTCAGGGCTGCTGCTGGGTCCTGGTGGCTACAGGCCCAGAGACATCTGTGTTTCTGCACCTACAGGAAGTGGAAAGACATTGGCGTTCGTCATACCTGTTATACAGGCATTGTCCAAGCGTGTGGTGTGTGAGGTCCGTGCACTTGCTGTTCTACCCACCAAGGAGTTAGCTCAACAGGTGTCAAAGGTGTTTAGCACATACACTGAGGGCAGCAGTCTAAAGGTGGTCATGATCGCAGGCCAGAAATCATTTGGTGCAGAGCGAGCAGCGCTCTCTGAAAGCAGGGGAGGTGTTAGCCACAGTTTGGCAGATATTGTCGTGGCCACTCCGGGCCGACTGGTGGATCACATCAACAAAAATGACAACTTCAGTCTACAACACCTACGATTCCTGATTATTGATGAGGCAGACAGGATGATTGACAGCATGCATCAGTCCTGGCTCAGTCAGGTGACTAAAGCAGTATACAGAAACCCAGGTGACACACAGACGTCTTTCTTCAGAAGAATACTGCCTGGACCAATCACAGTGGCAAGTTTGTCTCCACCACAGATTCCTCTGCAGAAGTTGCTGTTTTCCGCCACCCTCACACAAAACCCTGAGAAACTACAACTGCTGGATCTGCACCAGCCTCGACTCTTCAGTTCCACACACACCTTTTCAGAGACCCCCACACAAAGCCAGGACACATTTAACTTTCCTCAGGGCCTCTCTGTGAGTTTAACAACATTTCCTAAATTTTGTAATCAAACACACTGGTATAGTTCTCCTTTGCACACCTTTAACATATGGGAATGTCTTATGCAGGAGTATTACGTCTCCTGCAACCTAAGCAACAAACCGCTCATCATCCTTCACTTCCTGCTTCGGCTCAAGTTCAGTCCTGCTTTGTGCTTCACAAACTCCAGAGAAGGAGCACACCGACTTTATTTGCTGGTGAAGCTGTTTGGCGGTGTGGAAGTGGCTGAGTTTTCCTCTAGACTGAGCCCAAGTGAACGACAAAAAACACTGAAAGACTTTGAGGAAGGGAAGATCCCACTGGTGGGCAGAACAGCGAGAGCAGGGAAACCTGGGTTGTCGTTCACCTTCCTTTTAAAAGTGCAGGAAACAAGGTTTTTAAAGATGGTATCAGATGCTGGCAGTCCTGGCATAAAGAGGCAGCTTGTGCAACCAGAAAATCTTAAAGGCATGGAGGCTCGCTATGAGCAAGCACTGGCTGAGCTGGGCAAAGCTGTGAAGGTAAAAGCTTTAGAGCTGTCTGAGACCTTATTGGCAGGTTTTCCAGACTTGGATTAAACCTATTCCTGGATTACAGAAGTGCTATTACTGTTGGACAAGTCTTAATGTTTGTCTGGGGAGCCTGAATTATGCAAGTTTTATCAGTAGGGAATCTAAGGATCCCTTAATTCTCCTAATTCATGAGTGTGATTATAAATTGGACTGACAGGAATATGGATTTACTAAATTGCTGTTCAGAGAAATCACAACACAAAGCCACTTGGGGAATCTCATTAGTTCATCACAAGATTTGTGGCAAAATATAACTAATTAATTTAATTAATTAAAAGTTCATTTGTTTCTGTATTTAATTTTGATTGATTTTGCTCATTTTTTCTCTGTTTTATATTTTAGAAATATTTTAATCAGAAATATATTAAATTCATTACTGTCGATTTGAAATATATAATATATAATTTAATACGGCACCACATTATTTTCAGATAACAAAGTTAAATTTTGAAATAATAACATCAAATCAAAAACTACTGATATTAATATTTGGCTCCATTTTGAAGGCTTTAGGATAAATTCTGGGGGAATGATTGTCTATAAAATGAAAGTTAATTAACTAAATTTCTATAGGCGACATTTCAAACATGTTATTATTATCTTAATGTTTATGGTTAAATGATACTGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05607855_05619301.mRNA True 2599 mRNA 0.42 12 5607228 5619301

Neighbor

gene id symbol gene type direction distance location
CI01000050_05596597_05600160 NA coding downstream 7032 5596421 ~ 5600196 (-)
CI01000050_05576253_05586558 NA coding downstream 20670 5575971 ~ 5586558 (-)
CI01000050_05532863_05535400 NA coding downstream 71791 5532571 ~ 5535437 (-)
CI01000050_05461249_05502636 NA coding downstream 104342 5460472 ~ 5502886 (-)
CI01000050_05446323_05446794 NA coding downstream 160434 5445817 ~ 5446794 (-)
CI01000050_05654964_05705049 AAK1, AAK1A coding upstream 34490 5653791 ~ 5705049 (-)
CI01000050_05717074_05720876 RER1 coding upstream 97253 5716554 ~ 5721127 (-)
CI01000050_05728696_05760342 TP73 coding upstream 109164 5728465 ~ 5760804 (-)
CI01000050_05766242_05770223 NA coding upstream 146495 5765796 ~ 5770223 (-)
CI01000050_05800641_05808346 TPRG1L coding upstream 180703 5800004 ~ 5808346 (-)
G216130 NA non-coding downstream 17940 5588550 ~ 5589288 (-)
G216114 NA non-coding downstream 79432 5526055 ~ 5527796 (-)
G216084 NA non-coding downstream 148830 5458108 ~ 5458398 (-)
G216013 NA non-coding downstream 197223 5408935 ~ 5410005 (-)
G216149 NA non-coding upstream 14972 5634273 ~ 5637567 (-)
G216167 NA non-coding upstream 156906 5776207 ~ 5786023 (-)
G216146 NA non-coding upstream 176079 5795380 ~ 5798225 (-)
G216187 NA non-coding upstream 196002 5815303 ~ 5815538 (-)
G216180 NA non-coding upstream 219925 5839226 ~ 5840157 (-)
G216093 NA other downstream 55125 5489557 ~ 5552103 (-)
G215935 NA other downstream 534119 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 994336 4563687 ~ 4581278 (-)
G214436 NA other downstream 2018171 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 2096437 3491088 ~ 3514757 (-)
G216408 NA other upstream 736716 6356017 ~ 6356511 (-)
G216931 NA other upstream 1544794 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location