G216114


Basic Information

Item Value
gene id G216114
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5526055 ~ 5527796 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU245157
GCATGACTGCAAGGTAACGCACGCGATATGGCGGAGAGTACAGATCAACTGGCAGCAGGAAAAAGTGTGCATCATCCAAGGCTTGGGAGCATTTTATATTAAATGCAACAAAGAAGACTGTAACCTGCAAGTTATGCAAAGCTGAGCTTGTGTGTCATGGAAGTACCACAGTGATGCACGAGCACATGAAAAGAAAACACACTGGTGTCACGGATGAAGGCGAAACATTAGTATGAAAGAAACAACTCAGCATGAGTGAATTTGTTAAAAGGAGAAATCCTCCATGCACACCTCAACAAGCAGCCGCTATAACAGATGCCATCCTGTTTATGTTGGTAACTGACAATGCGGCCAATGTCAATGGTGGAAGATGAAGGACTAATAAAAAATTATTAGCATCCTCAACCCAGGATACATTCTTCCCTCAAGGACCCACTTCACAAAATTAATTGAAAGGAAGTACCAGGAGGCATTTGAAAAAATTAAGTCTGCTATAAACACCACCAAGAGCAGAATGGCTTTAACTGCTGATATATGGACAAGTGTTGCCACTGAAGCATACCTTGGCATTTCGAAGATTTTGAAGATGGTGTCTATCTGCCTTACCACCATGCCACTTGAAGACAGACACACCTCAACAAACATTGCAGAGTGGCTGGAAGATGCAGCAGTCAAATTTGAAATTCCTTTTGAAAAAAAATACTGACACCGTACGCAATAATGGTGCAAACATTGTGGCTGCTGCAAAATTACTGGAGGAGAAACATGGGTGGACCGGTATACCCTGCACTGGCCACATCTTGCGGTTGATTAATGCTGCTTTAAAGAACACAGGCATTGAAAGAGCTGTTGGAGCGGCAAGATGTCTTGTGGAGCACTTCAAAAAAAGTGAGCTAGCCTGCAGTTTGCTCAAAGAAATACAGAAACAATTGGGCACACCTGAGCACAAGCTTGTACAGGACATAAGCACCAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU245157 True 974 lncRNA 0.43 2 5526055 5527796

Neighbor

gene id symbol gene type direction distance location
CI01000050_05461249_05502636 NA coding downstream 23169 5460472 ~ 5502886 (-)
CI01000050_05446323_05446794 NA coding downstream 79261 5445817 ~ 5446794 (-)
CI01000050_05428643_05444772 RAD21L1 coding downstream 81196 5428587 ~ 5444859 (-)
CI01000050_05413540_05419241 NA coding downstream 106814 5413510 ~ 5419241 (-)
CI01000050_05275592_05286286 NFU1 coding downstream 239438 5275568 ~ 5286617 (-)
CI01000050_05532863_05535400 NA coding upstream 4775 5532571 ~ 5535437 (-)
CI01000050_05576253_05586558 NA coding upstream 48175 5575971 ~ 5586558 (-)
CI01000050_05596597_05600160 NA coding upstream 68625 5596421 ~ 5600196 (-)
CI01000050_05607855_05619301 NA coding upstream 79432 5607228 ~ 5619301 (-)
CI01000050_05654964_05705049 AAK1, AAK1A coding upstream 125995 5653791 ~ 5705049 (-)
G216084 NA non-coding downstream 67657 5458108 ~ 5458398 (-)
G216013 NA non-coding downstream 116050 5408935 ~ 5410005 (-)
G216018 NA non-coding downstream 120017 5404452 ~ 5406038 (-)
G216072 NA non-coding downstream 121831 5403869 ~ 5404224 (-)
G216071 NA non-coding downstream 122403 5403383 ~ 5403652 (-)
G216130 NA non-coding upstream 60754 5588550 ~ 5589288 (-)
G216149 NA non-coding upstream 106477 5634273 ~ 5637567 (-)
G216167 NA non-coding upstream 248411 5776207 ~ 5786023 (-)
G216146 NA non-coding upstream 267584 5795380 ~ 5798225 (-)
G216187 NA non-coding upstream 287507 5815303 ~ 5815538 (-)
G215935 NA other downstream 452946 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 913163 4563687 ~ 4581278 (-)
G214436 NA other downstream 1936998 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 2015264 3491088 ~ 3514757 (-)
G214314 NA other downstream 2101798 3413448 ~ 3424257 (-)
G216408 NA other upstream 828221 6356017 ~ 6356511 (-)
G216931 NA other upstream 1636299 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016180 NA coding CM030122.1 CM030122.1 11389809 ~ 11390312 (+)