CI01000050_05275592_05286286 (NFU1)


Basic Information

Item Value
gene id CI01000050_05275592_05286286
gene name NFU1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5275568 ~ 5286617 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05275592_05286286.mRNA
AAACGTGGAACCTTGACTTATGCCATAGTTTTATTGTACTAACAATAACTGTAGTCATTTGTCAGAAACAGTCTACCATTACCAACAAAAACAAAACAACAATAATGTATTCTATTATATTAATAGTATCACACAATACTAATATTATAAAATAATATTATGTTAATATAATTTTACAATAATATTTTTTGCGAGGGTACTTTATATGTTATTGTTGATGTTAGTAAGGCATATTAGGAAAATGTCCCGTTGTAAAAACATGTACAGTTGCTGTTGAAGTACAATAATTCGATCATTTGCTGTGCTCGAAGGCATCCTGTGTGCAGTTACCATGGAGCAGGGCTCAACAGACCCCCCCTTCACAAAGTGGGCAGAAGGCAGATTCCACAGCAAACAACCACTATGTTTACAGAACCTGACGGGAATCCTGCCTGTACTGATGCTGTTTTCATTCTTCAGGCAGTTGTTCAGAATTGACGGAGTCAAGAGTGTCTTTTTCGGCCCTGACTTCATTACCATTACTAAGGCCGATGGTGAAACGGAGTGGAAGGTGATCAAACCAGATGTCTTCGCTACCATTATGGACTTCTTCACCTCTGGACTTCCTGTTGTCAATGAGGCAGATGCTCCACATGCTGACACAGCCCCTTCGGAGGATGATGACGAGGTGGTGGCCATGATTAAAGAATTACTGGACACACGCATAAGGCCCACAGTGCAGGAGGACGGCGGTGACGTGTTGTATCAGGGTTTTGATGATGGTATTGTAAAGCTGAAGCTGCAGGGTTCCTGCACTAGCTGTCCCAGCTCCATCATCACGCTGAAGAGTGGCATCCAGAACATGCTGCAGTTCTATGTTCCCGAGGTGGAAGGAGTTGAGCAGGTGAAAGAAGAGGATGTGGATGTTGAAAAGGGTGTCCTCTGATGTCATTCCTTTCTCCATAATAAA

Function

symbol description
nfu1 Predicted to enable 4 iron, 4 sulfur cluster binding activity and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Orthologous to human NFU1 (NFU1 iron-sulfur cluster scaffold).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05275592_05286286.mRNA True 949 mRNA 0.42 6 5275568 5286617

Neighbor

gene id symbol gene type direction distance location
CI01000050_05206986_05209502 NA coding downstream 66066 5206534 ~ 5209502 (-)
CI01000050_05128945_05154128 RASEF coding downstream 121056 5128167 ~ 5154512 (-)
CI01000050_05008397_05010031 NA coding downstream 265528 5007741 ~ 5010040 (-)
CI01000050_04943326_05005151 NTRK2, NTRK2A coding downstream 270417 4943270 ~ 5005151 (-)
CI01000050_04844985_04863467 NAA35 coding downstream 412101 4844985 ~ 4863467 (-)
CI01000050_05413540_05419241 NA coding upstream 126893 5413510 ~ 5419241 (-)
CI01000050_05428643_05444772 RAD21L1 coding upstream 141970 5428587 ~ 5444859 (-)
CI01000050_05446323_05446794 NA coding upstream 159200 5445817 ~ 5446794 (-)
CI01000050_05461249_05502636 NA coding upstream 173855 5460472 ~ 5502886 (-)
CI01000050_05532863_05535400 NA coding upstream 245954 5532571 ~ 5535437 (-)
G215950 NA non-coding downstream 153909 5090246 ~ 5121659 (-)
G215886 NA non-coding downstream 229522 5034905 ~ 5046046 (-)
G215883 NA non-coding downstream 259581 5011721 ~ 5015987 (-)
G215910 NA non-coding downstream 352348 4922751 ~ 4923220 (-)
G215904 NA non-coding downstream 363532 4911765 ~ 4912036 (-)
G215915 NA non-coding upstream 101353 5387970 ~ 5388245 (-)
G216069 NA non-coding upstream 114757 5401374 ~ 5402011 (-)
G216070 NA non-coding upstream 115825 5402442 ~ 5403100 (-)
G216071 NA non-coding upstream 116766 5403383 ~ 5403652 (-)
G216072 NA non-coding upstream 117252 5403869 ~ 5404224 (-)
G215935 NA other downstream 202459 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 662676 4563687 ~ 4581278 (-)
G214436 NA other downstream 1686511 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 1764777 3491088 ~ 3514757 (-)
G214314 NA other downstream 1851311 3413448 ~ 3424257 (-)
G216093 NA other upstream 202940 5489557 ~ 5552103 (-)
G216408 NA other upstream 1069400 6356017 ~ 6356511 (-)
G216931 NA other upstream 1877478 7164095 ~ 7165401 (-)

Expression


Co-expression Network