CI01000050_05128945_05154128 (RASEF)


Basic Information

Item Value
gene id CI01000050_05128945_05154128
gene name RASEF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5128167 ~ 5154512 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05128945_05154128.mRNA
AGGATCGTTTTTGTTTTCTACCCTTTTCGTGGAAGGTGTCTAAATGGGGCAGGTAGGCCTACTGTATAACATTCTGTTGTTACATCGGGCCCTTATTAGTGTGACATTCAGAAGTAAAATGCTAAACGCGAGTTTCTTGTAATGTAAACAATGTTTTAGTTGGTATTTGTTAGGTATTATGTAAAGTATCATGACGCGCCGCGACAAACTAAACGCCTCAAAGTTGAGCGAGCTTGTTTACTTAGCACAGTTTGTGTAAGGGGCGTTTACACCACTCACTGAACTCATGGAGTTGTCAGTGTACAAGCACGATACCACAAGGTCAGCTTACTTTGAAAAGTCACTCTCATAATGTTTGCTAAATAATAACTCTCTAGAGCAGTCATGGGGTCTGACGCGCAAAAGGAGAGACTCCGCGAGCTCTTCCACGCCTGTGATGTGGACCATTCAGGACGCATTGAGAAATGGGAGTTTGTGAGAATATGTTCCGAGCTGCAGGTCCGACCCACCGAGATAGATGCGATTTTTTCCAGACTTGACACCGACAAAGACGGCACGATCAATCTAGAGGAATTTATGGACGGGTTTCAAGAGTCACACTTGTTGAAAGACGAGGATATGAGCAGCGAACACGCCGGGGAAAGTTTCTCTGCTGCCTTGGAGGAATTTAAATCCCGTCTGGGGGATCAGCTCAAATTCATCCCCAGGTTTGACCAGGTATCAACTCTGTACCAGAACATCAGTTTGACGGAGCCCAGAATGGTCCCTCAGTATGAAAGAGTTCTTCTCAGTTTTATCAAAGAGATCCGAATACTGAACACTGAAATGGAACATCTGGCACTTGCTGTAAAGAGAGCTCAGGATCAGTCGGCTATACAGTTGAGTGAGATGGAGGAAGAGATGGATCACCGCATCCACACTGCAGAGAGAAACACACGTTTACAGCAAAACCAGAAGTTGAAACAGGAGATTTTGGAGTCTCACACGAATGTTGCATTCTTGCAGAGTGAGCTGGACTCTCTGAAGAGTGATCTAACAGACCAAAGCATCAACTTTGAACGAGATGAGGCTCTTATGAAGTGCTTTTCTGAGGAGAGAGATAACCTGGAGAGACAGATCGAGGTGCTTCAGGCAGCCAACAGAAAGCTCCATGACAGTAATGACAGTCTGCGTGCAGCCTTGGAGAACAGTCAGAGCAAGAGTAAGACTCAGCGTATTAGTGGACTCTCACCTGGAGTTTACGTGACCACAAGAAAGAATATCTGTTCCTCTCATTTTGATCGGTGCTGTAACACATGTGCGGACGAGGACTATGATCATTTTCGGCTGATGGAGGGTCGCAGTCCGAGCTGTGATTCTCTGGCCCTGGCCCTGTGCGACCCCATGCGCAGACGCAGCTGTGAGGAAGACAGCCTCCCCGACAGCTGTGTGGACAGCGGCATGTCTACCCTGCGCTCAAATAACGGCTACGATTATGAGCATGAGAGACCTTCCTTCCTAAACTTCCAAGCAGAGGACAACACCACCACTGTATCTGGAGACACATCAGATACAGAGGTTTTGGAAGTGCATGAAGGGTCGGACAGTGAATCCGTTCTGAGTTGGACTCTGTCAAAGCCTGCTCAGAAAGACGACGTTAATGCTTCAGGGAAGAAATGCCTCTCTGCCATCTTCAATGAGAGAGAGCAGGATGAGTTGGCAGTGACTCAGCCTCCATCTGAGAAGGCTTACAGGATTGTGCTGGCAGGAGACGCCGCTGTGGGAAAGTCTAGTTTCCTCCTTCGCCTCTGTAAGAACGAGTTCAAAGGCAACACTAGTGCCACACTGGGGGTTGATTTCCAGATGAAAACTTTGGTTGTGGATGGGGTTCCAACAGTGCTGCAGTTATGGGACACAGCTGGACAGGAAAGGTTTCGGAGCATTGCCAAATCTTACTTCAGGAGAGCCGATGGGGTCCTTCTACTATATGACGTCACTTGTGAGAAGAGCTTTCTGAATGTGCGCGAATGGGTCGACATCATTGAGGATGTGTCCCAGGATGACATTCCCATTATGCTTGTGGGAAACAAGACAGACCTGAGGAATGAAGCTCTTCGGGATGGAGTCACCTGTATTCCAACTAGCTATGGAGAGAAACTAGCCATGACATACAGTGCCTTATTCTGCGAGACGAGTGCAAAAGATGGATCCAACATCATTGAGGCTGTTCTTCATTTAGCCCGAGAGGTGACCAAGCATGCTGACGAGTACAAGGAGCCCGTATCAGTGGCCAAACTGTCTGGAAATCATAACAAAAAGATGCCTAACCCAAACTGCTGCATGGGTTGACGCGTGTGCACGTCACATGACCCGGTGACAGCCTGTGTGCAGGTACGACGCAAGGCTTCTGCACAGAGCTAATCAAATATTTAACCATTCAACTATTTATTCAAGTCACATTAGTTCGGAATTGCCGGTTTGCGATTGTCCACATTGTTTGACAACTTCACTGTGCCAAATGTGTTCAAGTATTGTCCTCAGGACTGTCTCATAACTGTGTGTCATGGGTTGCCTTTAACAGCCCTGAATTTCACAGCTTTTATATTAGCCGTTTATTAGTAGCTTATGGAGTGAACATACACTCAGGAGTTTAGTAAACTGCACCTTGTCTTTATTTATTTCATGAAAACTTCCCTAAGCTAAGAGAGAAGAAATATATATCATAATAGTTCTGTAATGTGTTACAGAGAATGTGTGTGTGTGTTAGCTGAAATAATGTATGTGAAAGTTGAAATAATGTGAAAAGTTCTGTTTGTCAAGTAGAATTAAGCTTTCTAAGAAGTGTAACTGAAAAAATAGAGCGAAACATCTTAAAAAATGACAGAATTTATTGAAAAAAAAAAAAAAAAAAAATTGGAAGTTGGTGTATGATCCAAAACATTCATTTTTGGCTTTTAGCTTTAAATGCTCAAATTCATTTAATTTTTTTTTAAAACTATTTTAAAACAGATTGACAAGCTTTTGTGGATGCTTTATCTTTATACTATCATTGTTTTATGCATTTCTCAAGAGCACAGCTGGCTTTTAATGTTCACGAAATATATGTAACATTATATTCTGCAATAAA

Function

symbol description
rasef Predicted to enable GTP binding activity; GTPase activity; and calcium ion binding activity. Orthologous to human RASEF (RAS and EF-hand domain containing).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05128945_05154128.mRNA True 3106 mRNA 0.44 15 5128167 5154512

Neighbor

gene id symbol gene type direction distance location
CI01000050_05008397_05010031 NA coding downstream 118127 5007741 ~ 5010040 (-)
CI01000050_04943326_05005151 NTRK2, NTRK2A coding downstream 123016 4943270 ~ 5005151 (-)
CI01000050_04844985_04863467 NAA35 coding downstream 264700 4844985 ~ 4863467 (-)
CI01000050_04821454_04823915 NA coding downstream 304252 4821121 ~ 4823915 (-)
CI01000050_04786504_04807380 NA coding downstream 317815 4786316 ~ 4810352 (-)
CI01000050_05206986_05209502 NA coding upstream 52022 5206534 ~ 5209502 (-)
CI01000050_05275592_05286286 NFU1 coding upstream 121056 5275568 ~ 5286617 (-)
CI01000050_05413540_05419241 NA coding upstream 258998 5413510 ~ 5419241 (-)
CI01000050_05428643_05444772 RAD21L1 coding upstream 274075 5428587 ~ 5444859 (-)
CI01000050_05446323_05446794 NA coding upstream 291305 5445817 ~ 5446794 (-)
G215950 NA non-coding downstream 6508 5090246 ~ 5121659 (-)
G215886 NA non-coding downstream 82121 5034905 ~ 5046046 (-)
G215883 NA non-coding downstream 112180 5011721 ~ 5015987 (-)
G215910 NA non-coding downstream 204947 4922751 ~ 4923220 (-)
G215904 NA non-coding downstream 216131 4911765 ~ 4912036 (-)
G215915 NA non-coding upstream 233458 5387970 ~ 5388245 (-)
G216069 NA non-coding upstream 246862 5401374 ~ 5402011 (-)
G216070 NA non-coding upstream 247930 5402442 ~ 5403100 (-)
G216071 NA non-coding upstream 248871 5403383 ~ 5403652 (-)
G216072 NA non-coding upstream 249357 5403869 ~ 5404224 (-)
G215935 NA other downstream 55058 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 515275 4563687 ~ 4581278 (-)
G214436 NA other downstream 1539110 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 1617376 3491088 ~ 3514757 (-)
G214314 NA other downstream 1703910 3413448 ~ 3424257 (-)
G216093 NA other upstream 335045 5489557 ~ 5552103 (-)
G216408 NA other upstream 1201505 6356017 ~ 6356511 (-)
G216931 NA other upstream 2009583 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036018 rasef coding NC_007119.7 CM002892.2 49570884 ~ 49606121 (+)