G215883


Basic Information

Item Value
gene id G215883
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5011721 ~ 5015987 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU244902
TGATCTTCAGCAGTATCTCAGCTACCGTGGGAATATCGGCACTGATGCTTAGGATTCTGTCAAAGTAATGAATCGCATTCCACGAGAAGAGAGAAGAGAGCGGATATTAGACACACGAACAGCCTGAAGAAAACCGTCAGTGCTTTTGTTAGCGCATTTAAATGTGAGGAGAGGGAACAGACCCCGAAGAGAGTCATGGAGTAATGCACCCCTTGGTCAAAGGGGAGTGGAGAACACAGGAAAACAAAGAAAAACAAACTGAAGCTCCTTCCCGTTGCTGAAATGTCAAGATACAGGGAAGGTCAAGGTATGAAACTGATAGAGGGGTGACAAAGTGCGGAGACAGAGAATGGCAGAGATGAACATGAAATCAAGCAGGTTCCAGATCCAGTAGAGAAAAGAGACAGATAATAGATAAACAGACAGGGGGGTTGGGGGTTGGGGGGAAGCAGTGGAGCAAAGTTCAAAAGTCAGATACCACAGTAAAACAATACAACAGACAAAAGGGAGAAAATGTATTTTGCACTGCCCCTTCACCATAAATAACTAAATTCAGCCTTGTATTAGCAAGAAACCTTTAAAATGAAAACTGTGGAGGAAGTACATTTCCCAAAGGTACAAAATGTTTCTGACGTCGGAGAGGGAAACAGGGTGGGAAAGGGCTTCCCTTACATGACAGAAAAGGCATTTGAACATAGCACAACAGCATTTAAATTCATATTGATCGTCATGGCAGCATCATACTCATGTTTCATGGCAGAAAGGGAGTAGTTTGTACATTAAGGATGTTAAAACAGTTCTGATATTGGCAGTAACAGAGCTGATATGACTTGGAGGTTGGAGTATCTGAGTGGCACGTACCGCTCGGGCCCACTGCTGTCTGGGACTGACACAGTGGCATTGTACTGCAGGGGGCGGGGCCAAGTACCCAGAGCAATCAAGCACACGGATGTCAATCAAGTAAGCCGCCCAATAGGAAGGGCGCGATTATGGGTGTGGCCAACCAGGGAGTCAGGAGGTCAGGCGGCAACGCAGGTGGGCGGTACGAGTCGATCCGGAATATGGGAATTGGCCAAAAATGAACAGAAAAATAAAAACAAAAACAAAAAAACAAGGAAAAGGGGAGAGGGAGTGGAAGAGGAATACATTTTTTAATTGGAAACACTTTCAGTGTGACTTTCAATTCTCATAATGTTGGAGGAGAATGGAGAACAGGAGAGGAACAGATTATGAGAATATGTACTAGGCCAAATACTATTTTAGCCAGCAACAAAGATTCAAATATACTCTTCAATTAACTCAAGAGTACAGTAGAATGTGGGGTATTTATTACACAGCACTGCTTTTGTAACACAAACTGCCTTGGTTCCACAAAATCTATCATTTTCTTTGGACAAGGATGATGAGTTTAAAGTGTTTTGTTGGTTTTTATACATATTAGCATTATCATATTATAACCCAGTTCTACAGACATCTGAGCTCCATCTACCACAGAAAGAGTGAGAATGTGCGAACTAAACAAAAGAGTACTCACATCTGTGCGCAGAGCTTTAATATTCTTCCCACCCTTTCCGATCACCGCTCCGGCATTTTTGCTCTGTAGCAGAATTCTGAGCTCCACCATGTCGTCAGAATTTCGTGATCGCTTATGGGGCTTGTCCTCCTCAGTATCCTCAGCAGAACGCTTACCATTACTGTCTTTGTTGCTGTAGGTCTCCTCTTCCTGCGGGTCGTTTTCTGGCTCCATTATCTATCTACAACAAGCGGAGATGAACAGCTCTCTCTTTCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU244902 True 1790 lncRNA 0.44 3 5011721 5015987

Neighbor

gene id symbol gene type direction distance location
CI01000050_05008397_05010031 NA coding downstream 1681 5007741 ~ 5010040 (-)
CI01000050_04943326_05005151 NTRK2, NTRK2A coding downstream 6570 4943270 ~ 5005151 (-)
CI01000050_04844985_04863467 NAA35 coding downstream 148254 4844985 ~ 4863467 (-)
CI01000050_04821454_04823915 NA coding downstream 187806 4821121 ~ 4823915 (-)
CI01000050_04786504_04807380 NA coding downstream 201369 4786316 ~ 4810352 (-)
CI01000050_05128945_05154128 RASEF coding upstream 112180 5128167 ~ 5154512 (-)
CI01000050_05206986_05209502 NA coding upstream 190547 5206534 ~ 5209502 (-)
CI01000050_05275592_05286286 NFU1 coding upstream 259581 5275568 ~ 5286617 (-)
CI01000050_05413540_05419241 NA coding upstream 397523 5413510 ~ 5419241 (-)
CI01000050_05428643_05444772 RAD21L1 coding upstream 412600 5428587 ~ 5444859 (-)
G215910 NA non-coding downstream 88501 4922751 ~ 4923220 (-)
G215904 NA non-coding downstream 99685 4911765 ~ 4912036 (-)
G215872 NA non-coding downstream 103570 4906541 ~ 4908151 (-)
G215880 NA non-coding downstream 131565 4879872 ~ 4880156 (-)
G215839 NA non-coding downstream 235550 4773378 ~ 4776171 (-)
G215886 NA non-coding upstream 18918 5034905 ~ 5046046 (-)
G215950 NA non-coding upstream 74259 5090246 ~ 5121659 (-)
G215915 NA non-coding upstream 371983 5387970 ~ 5388245 (-)
G216069 NA non-coding upstream 385387 5401374 ~ 5402011 (-)
G216070 NA non-coding upstream 386455 5402442 ~ 5403100 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 398829 4563687 ~ 4581278 (-)
G214436 NA other downstream 1422664 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 1500930 3491088 ~ 3514757 (-)
G214314 NA other downstream 1587464 3413448 ~ 3424257 (-)
G214027 NA other downstream 2438819 2557166 ~ 2572902 (-)
G215935 NA other upstream 32929 5048916 ~ 5073109 (-)
G216093 NA other upstream 473570 5489557 ~ 5552103 (-)
G216408 NA other upstream 1340030 6356017 ~ 6356511 (-)
G216931 NA other upstream 2148108 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G138239 NA non-coding NC_047602.1 CM018548.1 24121610 ~ 24124569 (+)