Gene
RNA
| Item | Value |
|---|---|
| gene id | G215886 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 5034905 ~ 5046046 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU244908 | True | 1515 | lncRNA | 0.46 | 12 | 5034905 | 5046046 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_05008397_05010031 | NA | coding | downstream | 24865 | 5007741 ~ 5010040 (-) |
| CI01000050_04943326_05005151 | NTRK2, NTRK2A | coding | downstream | 29754 | 4943270 ~ 5005151 (-) |
| CI01000050_04844985_04863467 | NAA35 | coding | downstream | 171438 | 4844985 ~ 4863467 (-) |
| CI01000050_04821454_04823915 | NA | coding | downstream | 210990 | 4821121 ~ 4823915 (-) |
| CI01000050_04786504_04807380 | NA | coding | downstream | 224553 | 4786316 ~ 4810352 (-) |
| CI01000050_05128945_05154128 | RASEF | coding | upstream | 82121 | 5128167 ~ 5154512 (-) |
| CI01000050_05206986_05209502 | NA | coding | upstream | 160488 | 5206534 ~ 5209502 (-) |
| CI01000050_05275592_05286286 | NFU1 | coding | upstream | 229522 | 5275568 ~ 5286617 (-) |
| CI01000050_05413540_05419241 | NA | coding | upstream | 367464 | 5413510 ~ 5419241 (-) |
| CI01000050_05428643_05444772 | RAD21L1 | coding | upstream | 382541 | 5428587 ~ 5444859 (-) |
| G215883 | NA | non-coding | downstream | 18918 | 5011721 ~ 5015987 (-) |
| G215910 | NA | non-coding | downstream | 111685 | 4922751 ~ 4923220 (-) |
| G215904 | NA | non-coding | downstream | 122869 | 4911765 ~ 4912036 (-) |
| G215872 | NA | non-coding | downstream | 126754 | 4906541 ~ 4908151 (-) |
| G215880 | NA | non-coding | downstream | 154749 | 4879872 ~ 4880156 (-) |
| G215950 | NA | non-coding | upstream | 44200 | 5090246 ~ 5121659 (-) |
| G215915 | NA | non-coding | upstream | 341924 | 5387970 ~ 5388245 (-) |
| G216069 | NA | non-coding | upstream | 355328 | 5401374 ~ 5402011 (-) |
| G216070 | NA | non-coding | upstream | 356396 | 5402442 ~ 5403100 (-) |
| G216071 | NA | non-coding | upstream | 357337 | 5403383 ~ 5403652 (-) |
| CI01000050_04564233_04580815 | KANSL3 | other | downstream | 422013 | 4563687 ~ 4581278 (-) |
| G214436 | NA | other | downstream | 1445848 | 3525816 ~ 3589057 (-) |
| CI01000050_03491159_03514757 | NA | other | downstream | 1524114 | 3491088 ~ 3514757 (-) |
| G214314 | NA | other | downstream | 1610648 | 3413448 ~ 3424257 (-) |
| G214027 | NA | other | downstream | 2462003 | 2557166 ~ 2572902 (-) |
| G215935 | NA | other | upstream | 2870 | 5048916 ~ 5073109 (-) |
| G216093 | NA | other | upstream | 443511 | 5489557 ~ 5552103 (-) |
| G216408 | NA | other | upstream | 1309971 | 6356017 ~ 6356511 (-) |
| G216931 | NA | other | upstream | 2118049 | 7164095 ~ 7165401 (-) |
