CI01000050_04786504_04807380


Basic Information

Item Value
gene id CI01000050_04786504_04807380
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4786316 ~ 4810352 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_04786504_04807380.mRNA
ATTGGATTGCAAGTCTTCTACACACAAGGGTTTGGACAGACCAATGAGTACAACTCCAATTCATTCTGTATCTTGGTCCCTTAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGGTTACACATCTCAATTGTAAGAATTTTAATTAGAAGTAAAAGTGAGGTTAAACATGCATACCATTTTCCATGTGTCCTTTTCGCGCATTACTCCACGTGTCCTTGAGAAATGTTTCTTTTTTTTTAAAGAAACAGTTTTACGCAATGAGAGGGTAGCTAAATTTGGGTTGCTACAGATAAATTTAGACAATGTACCACAGACCTCGTTCTGATTTTGGAGACGATTTAAAATTCAAAAATACAAAATATTTCCTGGTAATTGCATACCGTGTTCTGGATTGTTGTTGTCCTGTCTTTAATGTAAACGAAGGCCGTCGCTAGTTTTGATTTAAACAATGCTGTAAGAAAAATGTGACACGAATCAAGGCTTAAAGGGATAGTTCACCCAAAAATTAAAATTTGATGTTTATCTGCTTACCCCCAGGGCATCCAAGATGTAGGTGACTTTGTTTCTTCAGTAGAACACAAATGATGATTTTTAACTCCAACCGTTGCGGTCTGTAAGTCGTATAATGCATTGAAACGGTAACACCATCTATGAAAATAAAAAAAAAAACATGCACAGACAAATCCAAATTAAACCCTGCGGCTCGTGACAACACATTGATGTCCTAAGACACGAAACGATCGGTTTGTGTGAGAAACCGAACAGTATTTATATCATTTTTTACCTCTAATACACCACTATGTCCAACTGCCTTGAGCATCCGGTTGGTGAGGTCTGAACGCGCTCTGACAACGGAAGTGATCTCTTGTGCCTAATGAGTAAATACCCACGAGGAATGTTTATTTACATTTTTAAATATTTCCTTCATTTTAATTAAAAAACTAATGTCTTTTCAATGTGATATGTGATATGTGATAGGAAAAGAGAGGAGAATGAGTTCGGCATAAGGCAGATTTGAAGTGAACTCGGGTCGCTTGTAGCAAAGGCTAACATCTATTGCTTCACGCCCTACACCCTACGCCCTACGCCAGCTGAGACTTTAGGTAGTTTGTTGTAATTTTTTATTTTTGTCTACGCTAACCACACATTGGTAGGTGGAGCTAATATAAATGGCCTCTGCCAACAAGGTGTTACATGAAATATGTGCCATAACGATTGCAGAAAAAAATAATATGATGCACAGAAATCAATTTCAATTATATGTTGATTTTATTTTATTGATAGATCTCATTTTTTTATAATCTGGTGAGCTTCAACGGGCTGGTGGCTGAATCCTCGTCGAAAACGTTTGAGCTTCTTAGTTCGAATCCAACGTCGTACATGTTTTCTTTCTTTTTTCTTTTCTTTTTTTTTTAAATCTCATAAAAACCAAAGACATTAATCCATGATTGTTTATCAAGAATACGAACAAATTTTTGTGCATTTTATTCACAACAACAAATTCAGGGTCTCTGCAATAGCGTTAAGCGCTCCTCTGCGTGAACTGTGCACGCCACAAGGGAACACTGACTGTTGCCTTCAGTCACTGATAACGGCGGCAACGAGCACTCAGTATGTTTTCAGAAACAACACATTCCAGCGCCCGATCGCCTCTTTAACAAAAGAATGATATGAATGCTCTGCTCTGCTACCTAAAATCGTTATTGGGTACATCCGTGCAGTGAGGTGTTTGAAACGTGGTGGGGACGTACTCACCCGTGCCACCACAAATTACGCGTTTTCCAGTAACACATATTATAATCAGTAAAATAGCTGACACAATGTAGGCTACATTTGGTGTCAATGTACGCGTTTTTATGGAAATTCACAGTTCTGATCAAAATGTGTTATGACTGTTTCCCCAACTCTGAAAAAACATTATTTATGAACGTTTTTTAAGGACATGTAAGGTTACTAATACATAACAATTACTTCTAATTAAAGGAAAATGCCATTTTTTTCAGTAACACATATAATCAGTTGAAGAACAGGTAAAATGTACATTTGGTGTCAATGTATGCATTTTTATGGAATTTCCCTGTTCCTATCAAAATGTGTTATTACTGGTAAATTCTACTGTTTTTTCTCTGTAAAAACACATTTATTTTTTACAGTGTAGGGTTGCACCAGCCATTCGTAAGGTCTTTCTTAAATTGGAACATAAAATTCACACAGAGACTTAGTAACTATTCGGTTGCACCATTTGGTCTTAAGGCAGAACATAGATAGTAGGTCGTAAGCTCTCTGAAAAGTAATGCGTAGTCGCATAATATGGCGTTTACCCTCAATGATCCAATATCAGCCTTCAAATACGGGAGCAGAAGCTGTTGAAATGCTGTGAATTTCAGTTTAGCCTTCATTCTAACTTATTGTGCATCACGTTACTAATGGTAAATCTGCAGTTATGGCTTAATGGTTAGAAAGTCTGACTTGTAACCGAATGGTCAAGGGGGTTCAAACTTAAATTTTGATTTCAGGGGGACTTTAACATCAGTGGATAGGTGTGGTGTACATTCTTTTGCCTTTGTTACATTGTGGATTATCAAGTAAAGTCTGAGTTTGAATGTCATTTGCCTTCATCGCGTTTATATACACCACCAGGTCATGACAGCAGGATAGTTGGTAAATGAATTTATTATTCAGAATGCACAGTTGGAAAGAAAATAGGAACATTTCATCAAGTTCAAGATAATTCATGTTAATGCAGAGAGTGTGATTCATTGTTTTAATCAATTGACAGCCATAAAACATAATAATAATCTGCGTTCTCATGTATGTAGGTGTGCTGGAAACTCAGTTGTAATAAGCAGAAGTAGCACAAGTAGTTATGCAAATAATACACTTTTAGTTTCTCTTTCTCTAGTTCATACAGACAAAGACGGAGAGACACAGCAAAAAACAAACTGTGTGAGACATAATGGAATCAGAAAATGAAGGTGATGCACATGATCTGAGGATTGTGCTGCTTGGAGTCTCTGGAGCTGGAAAGAGTTCAATGGGAAATGCAATACTGGGTCGAGAGGCGTTTAAAGAGAGCAGAACCAGAGAGAGTGAGATACAGAGAGAAAGAGTAGAAGACAGAAACATCTCCATCATCGACACTCCAGGATTCTTCAACACTCAACTGACTGATGAAGAGCTGCAGAAGCAGATGATGAAGAGTCAGGATCTCTCTGATCCTGGTCCTCATGTGTTCCTGCTCATCATCAACCTGAAGAACTTGGAGGAGGACGAGAGGAACATTGTGAAGGAAATTGAGGAGATCTTTGGAGCTCAAGCTTTGAAGTTCACAATGGTGCTGTTTACTGGAAGAGAACGAATGTCAAACAAAGAATGGAACGATTTTACACTTAGTGAAAAATTTCAGGGCCTAGTCAGTAACTTCAGAGAACAATATCATAAGATCAACAAAAATGTCAGACAAAGAAAGAAAACAACTGATGAAGAAGCAAATCTACAAAGAAGGAATTCATTAGATAGAATTCTGGAATTCTCGAGCCAGGAGAAACAAAAACAGGGTAAAAGCAGGAAAATAAGCCAGAGGAAACAACAGACAACAGGAAAAAAACATCCAACTCAAGCAGGAGATAGAAGAGCCAGGCCAGCAGAGAACGACTGGGAAAGTGGTCGAGTTCTTCCAGAAGGGGAGAGCGACGTTGCGCTCGCCAGTACTCCCCTTTCTACTGGCGAGCATTCTCTTTTAACGAGCAAACAGCGACAAGATGGCCTGAGCGGCCGCAGTACATGCAGAGCCTATGAAGGATACGACGTTGGTGCTCAGCAGGTGAAATCCGTATCCCTCCCACCTGCATGGGCTCAGGAAACTGCGCAGCTTCAAAGGAGACAACAGGGAGACAAGTCAAAGGGAGATATAATGACAAAAATGAAAAGGAAATTGAAAGATCGCCTCACCATGAACCACCTTATGGCCCTTCGGAGAAACAGAACAGTAGAAGAAAGCGGAGGAAGTAGATGTTGGGCGTTGACGACAGTGTGTCTCGTGCTCATTTGTGTTCTTCTGATGGTCGCCATCATACTGCAGCACAGCACCATCACAGAACAGAGACACCAGTTAAAGAATTACAAGAACACAGTTGAAGAGCTCAATCAAACTATCAACAGCTTACAGGACAATTTCAATGATCTAACGATTGAAAAAGACCAGTGGCATCAATTCACCAAAATCCTAGATCGACTGGGATGCTCCAGATTTGTACCAAGAGTTCGAAAGATTTCTGAGCCACGTCACATTCGTCTTCACATTCGCCTGCTATGGGAGCAAACAGCAAAACAGCGTCCAGGTTGGCTGGGCACGTGGATCGGTGAGCAGGGCAGAGAGATATATATGACGCTGTACTGGGGCGAAGGTGAGAAAGATGACCCGTCTAAAGTCCTGGACAAGTTCGCCAATTATATAAGGCTGAGGAAAAATAAGAGAATAGCCAGACACAGCTTTAAACAAAGAAAACAAGGAGTCACGGAAGGTTTTGATCACTTTGTGAAGGACTTGAGACTCCTACTAATGTATTGTGAGTATGGCGATCCAGATGATATGTTGATCAATGCGATGATAGCGGGTGTCAGAGAAAAGCGCGTCCAAGAGAGACTGTTAGACAAAGGGGAAGATTTAATGCTACCAAAAGCAATTGAAATCGGCCAGCAGTTTGAACTGTCACAGAAGCAAATTAAAATAGTCAGAGAAGAAGAATCTCAAGTGCAAGCAGTAAAGGTGAAAGCAAAATACCAAACTGCAAACAAGAAAACCTATCAGAAAAATCAGACAAAATTTGTGCAGAAAGAAATGCATGCAAACCGACCAAAAAACTGTCCAAGTTGTGGCAAAGACCCACAACATAAGTGGAATCAAGGAACATGTCCAGCAAAAGGCTCTGTATGCTCATACTGTCACAAACCAAACCACTGGGTGGTAGTATGCCGAAAAAGATCAGTAAACACAGTCAGTGTGCAGCTGCAATCAGAAACAGAAGATGAGGAGATGCTGAGCATAAATGTTACACAAACACATGAGCACAGTGATGATAAATGGACAGCAGACATTGAAATTCTGTCTCAGAAGGTGCCATTCAGAATTGTTACTGGTGCAAAATGTAACACATTGACTTTAAGTAGTTATCAGGCACTCCTGCTTGATGGTGAGCTTAAATGCTCTAATCGAGTGCTGAAGTCGTACTGTAACCACCAGCTGAAGCCTATAGCTGTGGTTGACCTTCTGACTAAATACAAGGATGCTGAGATATTAACAGAATTTGAGATTGTGGACATTTCTCAAGAAAATGTGCTCAGCGCTGGGCTAGATGATTACCCAGAGCTGACTCGCACTACTGGAACTTTACCAGGCAAATACACAATTAAAATTGATCCTGATGCAAAAGGTGTAGTCCATCCTGTCCGCCGTCAACCAGCTGCACTGAAAAAGAAAATAATAAAGAAACTACATGAGATGGTTAAAGATGGATACATCACAAAAGTCAGCCAACCGACCGAGTGGATATCTTCCAGCGTATTATGGATGAGATGCTTGAGGGCATCAGCAATAAGTGTCATGAACGACATTCTCATCGCAGCACCCTCAGTAAAGGAACATGATGAGACCCTCCGCAAAGTAATTCACAGAGCAACAAGGTATAATCTGAGCCTCAATTTCGACAAATGCCACATCAAGCAATCTTCTGTGCCCTACGTAGGACACCTGATAACATCAGTCGGTCTGAAGGCAGACCCAGCGAAAATAGAGGCTGTCAAGTCCATGCCAACACCAACAGACAAGGATGGTGTTCGTCGTTTCCTAGGTTTCATTACCTATCTGTCAAAATTCCTGCCAAACCTCAGCAAAGTCGATGCACCTCTAAGACAGCTCCTGAAAGCGGATGTTGAATTTGCATGGACAGTCCTCCAGTTGCTTTCTCATCCAGGTCACTGGACAGATACAGAAACGCGCTACGCACAAATTGAGAAAGAGATGCTCTCAATGTTCATGCATGTGTCAAGTTCCACAATTACATATTTGGAAACCATGTCACAGTGTACAATGACCATAAGCCTCTGGAAGATATTTTCAGAAAGCCACTGCTCTCTACCCCCATGCGCATACAGAGAATGCACCTCCGCCTGCAGTGTAATAGTGAAGAGCAAGCAGAGAGCTCGCGAGGTCCTATACTGGCCAGACATGAGCTCTGAAATCAAGCAAATGGTGAAGAACTGCGGCAAGTGTGCAGACTTTCAGAACCGGTTGCCTAGACAACCACTTAAACCAACAGAAACGCCCGATCTTCCATTTGAAGAAGTAGCTTCTGACCTGTCTGAGTTTGAAGGAAACCATTATGTTCTGCTGGTGGATTACTACTCAAAATTCATTGAAGTGGATAAGCTGAAGGGCTTACATTGTCGTGCTGTCATAGAAAAGCTAAAGGCTCAATTCAGCAGACATGGAATCCCCACCATCCTTCGAACAGACAATGAGCGCACAGTCCAGACTGTTAAGAAACTTTGGTGTAAGGCACCAGACAAATACCTTGCACTGCTTGACTACAGAATGACGCCATTGGAGTCAGTAGGCCTTTCACCAGCTCAGCTGCTGATGGCCAGGCATCCCCGCAATAACCTGCCTGCTGCCCGTCTGCTGCTCACACCAGCAGCGTACGACCCCCTCAAAGTTAAACAGCATCTAGATGAAAGCAAAAGCGTTCAGAAGCTTTATTACAACCACAAGTGGCCCTCGTGCTGCGCTGAAGCCTGGAGATGAAGTAAGGATGCAACCACATCCCGGCAGTCACAGATGGTCTCCTGGAGTTGTTATGAGATCACACTGTGCCCCAAGATCTTATGTTGTTGACTGTGGAAGTAGAGAGTACCGGCGCAACATTCAGCATCTTCGCAAGAGCACAGCAGCTGCCAACGAATCCCGTCATGGGCTTAACGATGATCAATAGA

Function

NR:

description
LOC553316 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_04786504_04807380.mRNA True 7006 mRNA 0.41 12 4786316 4810352

Neighbor

gene id symbol gene type direction distance location
CI01000050_04781467_04784451 NA coding downstream 1729 4781003 ~ 4784587 (-)
CI01000050_04732489_04733933 NA coding downstream 52383 4731986 ~ 4733933 (-)
CI01000050_04702299_04703455 NA coding downstream 82861 4702243 ~ 4703455 (-)
CI01000050_04564233_04580815 KANSL3 coding downstream 205038 4563687 ~ 4581278 (-)
CI01000050_04442645_04542984 BMP1A, BMP1 coding downstream 243053 4442415 ~ 4543263 (-)
CI01000050_04821454_04823915 NA coding upstream 10769 4821121 ~ 4823915 (-)
CI01000050_04844985_04863467 NAA35 coding upstream 34633 4844985 ~ 4863467 (-)
CI01000050_04943326_05005151 NTRK2, NTRK2A coding upstream 132918 4943270 ~ 5005151 (-)
CI01000050_05008397_05010031 NA coding upstream 197389 5007741 ~ 5010040 (-)
CI01000050_05128945_05154128 RASEF coding upstream 317815 5128167 ~ 5154512 (-)
G215839 NA non-coding downstream 10145 4773378 ~ 4776171 (-)
G215832 NA non-coding downstream 37394 4748641 ~ 4748922 (-)
G215250 NA non-coding downstream 193150 4592039 ~ 4593166 (-)
G215220 NA non-coding downstream 204094 4551054 ~ 4582222 (-)
G215209 NA non-coding downstream 386144 4383672 ~ 4400172 (-)
G215880 NA non-coding upstream 69520 4879872 ~ 4880156 (-)
G215872 NA non-coding upstream 96189 4906541 ~ 4908151 (-)
G215904 NA non-coding upstream 101413 4911765 ~ 4912036 (-)
G215910 NA non-coding upstream 112399 4922751 ~ 4923220 (-)
G215914 NA non-coding upstream 124245 4934597 ~ 5386292 (-)
G214436 NA other downstream 1197259 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 1275525 3491088 ~ 3514757 (-)
G214314 NA other downstream 1362059 3413448 ~ 3424257 (-)
G214027 NA other downstream 2213414 2557166 ~ 2572902 (-)
G215935 NA other upstream 238564 5048916 ~ 5073109 (-)
G216093 NA other upstream 679205 5489557 ~ 5552103 (-)
G216408 NA other upstream 1545665 6356017 ~ 6356511 (-)
G216931 NA other upstream 2353743 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location