Gene
RNA
| Item | Value |
|---|---|
| gene id | G215914 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 4934597 ~ 5386292 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU244941 | True | 1111 | lncRNA | 0.37 | 3 | 4934597 | 5386292 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_04844985_04863467 | NAA35 | coding | downstream | 71130 | 4844985 ~ 4863467 (-) |
| CI01000050_04821454_04823915 | NA | coding | downstream | 110682 | 4821121 ~ 4823915 (-) |
| CI01000050_04786504_04807380 | NA | coding | downstream | 124245 | 4786316 ~ 4810352 (-) |
| CI01000050_04781467_04784451 | NA | coding | downstream | 150010 | 4781003 ~ 4784587 (-) |
| CI01000050_04732489_04733933 | NA | coding | downstream | 200664 | 4731986 ~ 4733933 (-) |
| CI01000050_05413540_05419241 | NA | coding | upstream | 27218 | 5413510 ~ 5419241 (-) |
| CI01000050_05428643_05444772 | RAD21L1 | coding | upstream | 42295 | 5428587 ~ 5444859 (-) |
| CI01000050_05446323_05446794 | NA | coding | upstream | 59525 | 5445817 ~ 5446794 (-) |
| CI01000050_05461249_05502636 | NA | coding | upstream | 74180 | 5460472 ~ 5502886 (-) |
| CI01000050_05532863_05535400 | NA | coding | upstream | 146279 | 5532571 ~ 5535437 (-) |
| G215910 | NA | non-coding | downstream | 11377 | 4922751 ~ 4923220 (-) |
| G215904 | NA | non-coding | downstream | 22561 | 4911765 ~ 4912036 (-) |
| G215872 | NA | non-coding | downstream | 26446 | 4906541 ~ 4908151 (-) |
| G215880 | NA | non-coding | downstream | 54441 | 4879872 ~ 4880156 (-) |
| G215839 | NA | non-coding | downstream | 158426 | 4773378 ~ 4776171 (-) |
| G215915 | NA | non-coding | upstream | 1678 | 5387970 ~ 5388245 (-) |
| G216069 | NA | non-coding | upstream | 15082 | 5401374 ~ 5402011 (-) |
| G216070 | NA | non-coding | upstream | 16150 | 5402442 ~ 5403100 (-) |
| G216071 | NA | non-coding | upstream | 17091 | 5403383 ~ 5403652 (-) |
| G216072 | NA | non-coding | upstream | 17577 | 5403869 ~ 5404224 (-) |
| CI01000050_04564233_04580815 | KANSL3 | other | downstream | 321705 | 4563687 ~ 4581278 (-) |
| G214436 | NA | other | downstream | 1345540 | 3525816 ~ 3589057 (-) |
| CI01000050_03491159_03514757 | NA | other | downstream | 1423806 | 3491088 ~ 3514757 (-) |
| G214314 | NA | other | downstream | 1510340 | 3413448 ~ 3424257 (-) |
| G214027 | NA | other | downstream | 2361695 | 2557166 ~ 2572902 (-) |
| G216093 | NA | other | upstream | 103265 | 5489557 ~ 5552103 (-) |
| G216408 | NA | other | upstream | 969725 | 6356017 ~ 6356511 (-) |
| G216931 | NA | other | upstream | 1777803 | 7164095 ~ 7165401 (-) |
