CI01000050_05008397_05010031


Basic Information

Item Value
gene id CI01000050_05008397_05010031
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5007741 ~ 5010040 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_05008397_05010031.mRNA
AGTGAGAGGATGTCCGTGGGTGAAGTCCAGGTTACCCAGGCATGGCTGCACTCTCAATGGCACGTCCAAGTCCCTCCTGCCTGGCTGGACGCTTGTGTGAACTGGATAAAGGAGGAGGCGGATAGAGAATCCCTGCCTCAGTCGCAGCTGAACCAGCGTGTCTTGGAGCAATGGCTGCTGACGGACCTGCGAGATCTGGCCCACCCAGTTCTCCCCGAAAGAATTTCGGAGGCGCTGAAGACACAACTGGACAGCTGTTACTGTGTTCAGATGGACTCCGTACTAGACATCAGCCAGCCTGCCTACACTCAACTGCAGCGTATTCGAGGAACCAACTGCTCCAATGATCAAGTCTCGGCTGTTACGCAGGAAACGCAGAGGCCGTGGGAGGCCAAGCCCACTCGCATGTTGATGTTGCAGCTCACGGATGGAGTGCAGAGTCTGGAGGGTATGGAATACAGGCCCATCCCGGCTCTGAGTACCAACCTGCCTCCCGGCACGAAGCTCCAGCTAGTTGGGCCAATCGTCGTCCGTCTAGGGGTGTTGCTCTTGAAAGCTGAGAACGTGAAGGTGTTGGGTGGGGAGGTGGAACAGCTTTTGGAGATATACTCTCAAGGAAGAGTGCTTTGTGGGACACTTGGTTTGCCTGAGGAGAACCATCCACGAGGTGAGGAACCGGATGACCGGGAGCTTCTGGCCAGCGTAGAGGCTGTGGGAGATCATCAGGTAGCCGACAGCGGCTATGACAGCCTAACTTCAGAAGCTTCCTCCAGACCATCTCACCATCATTCACAACCCCATCCTCAAGTGATGCCCATTTCCAGGGAAGACAACTGGGATAATATGGATGAAATTCCAGATGATGACTTCAGAAATATTCCAGACAATTTTGATGATGTTCCACAAAATGCCGCTGATGATATGATGGACTACATTCCTGAGGACTTTGATGACATCCCGTTGGAGGAGCTGGACAGTGTGATGCGCCCGATAGATTCAGAAGTCTTGCCAAGTACTCGGGAACACTCTGAAATCCAGCAACCTGACTCAAAGTTACCAACCCAGCCCAAAACGGAAGAACTTAACCCTCTAAGTTTTCGCTCCAGAACTCCTCTTAGCAACACTCACCAAAGCAGAAACTTAAATGAAACTCACGATACATCTGGTGCAAGTTCCTCTACAAACACCGTAGAGTCTTCTGGTTGCAAACGAGACGCACCTGTTCCCATGTACCTCTGCAGACTACAGGCAGGCAGTTGGCCACCCGCCAGCGTTCAGGTTTTTCGTCTACAAGCTTTCATCGTCACACTGGTGGGAAAGTTGCGCATTAGCGGCAGCACGTGGAAACTGGAGGCCACCATATCAGATGGAACCGGGTACTTGGACGTGGACCTGTCTGATGCCATGCTGGCCAATCTCATTGGCTTCTCGGCAACGGAGACCCGAGTCCTGCGGAAAGACGCGGTGAGACGCGGTGAGGTGGACAGTGGGATACTGCATTGTCAAAGAGAGCTGGTGGATATGTGCTGTATGATGAGCGTGCAGGTGGATCAGACGGGCAGAGGAGTCGTGTTGAGTGCCAGTCCGCTCTCTGACAGAGAATGCTCCGAGCTACAGAAAAGAGTGAAAGAGAGGAGGAATTAAGCACTGCTTATTCTCTTGACTCTCTTTTTAACCTAACCTCACAGTGTTTGTACTGATTCAGTCAGTGGGTTCAATGAGATTTGAGTGGAATAACTTGTTTTGGTTGTCTCAGTCTCAAGAAAACTGTTACATTTCAGAATTCATTGTATTCTATTTTCGTAATTGTTTTTGATCAATTTTTGTGGTTTTAATGTCTTCCGTGGTTTAATTAATTAAAAAATAATAAAGAATTCCAATTTCACTTGTTTTTTTTTTATTTTTAGCACAATTTTTATTGTTACATTTTCTGGAGAAAATGTAAGGTGTTGTAGGTGGTTGCCAGGGCGTTGCTATGTGGGTTCTACTGTGTTCTGAGAGGTTTTAACGTGTTTCTTTATTAGAAAAGTAATAGCGCACTTTTCCCCATAAACCACATGATTTGAAGTACTACTATATCAAGTATAGTCATAACGAAGTGCAGTTGTAACACTGGAAGTCTTTCCAACTTTTTTAATGAGATCCTTTCTGAAAACATTTTAGAATTTTTAATTCTTACGTAATTTAATTTATTGTATTTTTCAATTTTATTTTGATTGGTTTTATTTCTACTATGTAATTGGTAGAAATGTACAACGCTGCCATGCCAAAATCGCCTCAGCTGCTGACATGGCATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_05008397_05010031.mRNA True 2300 mRNA 0.47 1 5007741 5010040

Neighbor

gene id symbol gene type direction distance location
CI01000050_04943326_05005151 NTRK2, NTRK2A coding downstream 2590 4943270 ~ 5005151 (-)
CI01000050_04844985_04863467 NAA35 coding downstream 144274 4844985 ~ 4863467 (-)
CI01000050_04821454_04823915 NA coding downstream 183826 4821121 ~ 4823915 (-)
CI01000050_04786504_04807380 NA coding downstream 197389 4786316 ~ 4810352 (-)
CI01000050_04781467_04784451 NA coding downstream 223154 4781003 ~ 4784587 (-)
CI01000050_05128945_05154128 RASEF coding upstream 118127 5128167 ~ 5154512 (-)
CI01000050_05206986_05209502 NA coding upstream 196494 5206534 ~ 5209502 (-)
CI01000050_05275592_05286286 NFU1 coding upstream 265528 5275568 ~ 5286617 (-)
CI01000050_05413540_05419241 NA coding upstream 403470 5413510 ~ 5419241 (-)
CI01000050_05428643_05444772 RAD21L1 coding upstream 418547 5428587 ~ 5444859 (-)
G215910 NA non-coding downstream 84521 4922751 ~ 4923220 (-)
G215904 NA non-coding downstream 95705 4911765 ~ 4912036 (-)
G215872 NA non-coding downstream 99590 4906541 ~ 4908151 (-)
G215880 NA non-coding downstream 127585 4879872 ~ 4880156 (-)
G215839 NA non-coding downstream 231570 4773378 ~ 4776171 (-)
G215883 NA non-coding upstream 1681 5011721 ~ 5015987 (-)
G215886 NA non-coding upstream 24865 5034905 ~ 5046046 (-)
G215950 NA non-coding upstream 80206 5090246 ~ 5121659 (-)
G215915 NA non-coding upstream 377930 5387970 ~ 5388245 (-)
G216069 NA non-coding upstream 391334 5401374 ~ 5402011 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 394849 4563687 ~ 4581278 (-)
G214436 NA other downstream 1418684 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 1496950 3491088 ~ 3514757 (-)
G214314 NA other downstream 1583484 3413448 ~ 3424257 (-)
G214027 NA other downstream 2434839 2557166 ~ 2572902 (-)
G215935 NA other upstream 38876 5048916 ~ 5073109 (-)
G216093 NA other upstream 479517 5489557 ~ 5552103 (-)
G216408 NA other upstream 1345977 6356017 ~ 6356511 (-)
G216931 NA other upstream 2154055 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036020 rmi1 coding NC_007119.7 CM002892.2 49766338 ~ 49769987 (+)