XLOC_036044 (ube2d4)


Basic Information

Item Value
gene id XLOC_036044
gene name ube2d4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52284075 ~ 52297799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070563
AGCACAGCACTAAAAACTGTCAGTGAGGCTAGTGGGGGGTAAGAATTGACCAAATCTGCGACTGTCCTGTCAAACAGCGGTGTGAATGTCCACATCTGTGCTCCTGTGTTGTTATATACGTCACGCGTGACGGCTGAGGAGAAAACCCCCCCAGCAGCGTTCTCGTCCAAACTGTACAGGCCAAAAACAGAATCTGAAGTAGATCAAACAGTGGGCTGTGATTCAGCGAGCAAATGGCGTTGAAAAGAATCCAAAAGGAACTGACAGATCTACAGAGAGATCCTCCAGCCCAGTGTTCAGCAGGTCCAGTCGGAGAGGACTTGTTCCACTGGCAAGCGACAATAATGGGGCCGAATGATAGTCCATATCAAGGAGGAGTTTTCTTCCTCACGATTCACTTCCCAACAGACTACCCATTTAAACCACCAAAGGTCGCGTTCACAACAAAAATCTACCACCCTAACATTAACAGTAACGGCAGCATTTGTCTGGACATCCTGCGGTCTCAGTGGTCACCTGCGCTCACGGTATCCAAAGTCTTGTTGTCCATCTGCTCCCTGTTATGTGACCCGAACCCAGATGACCCGCTGGTACCCGAGATCGCACACACATATAAAGCAGACAGAGAAAAGTACAACAGACTAGCGAGAGAATGGACGCAAAAGTACGCCATGTGAGAGAGTGCCTGCATGAACCGCTCCAGAATCAAACGGACAGCGAAACGTGTTTTTACTTTGAACAAGAGGAGTAAACATGAGTGAATGTTGAGTGGATTGAAACTAAAACAACAGACCCTTTGGCCAGAAGCAGAATGAGGAGGTGAGAGTCTCAGTCCTCCGTCATGTGCCGTTGTTCTCACCGCGAATCAacctggaataaaaaaaaaaacacacaaacaaaactccAGGAAAACTGTCAAACCGGACAAACCTCGGGGTGCCACAAAACCCAGGAACTTAGACTTGTAGTTAGCTCTATTATTACTGTCATTGTGGATTTTTTCTCAGTGTTACTCTCGTCATCACTGTGCTGTGGTATGCTGAATGAGGAAACGGTGGGCTGTTGGAAAGCTGGCGGTGCGGATTTTAAGGAAAATGTTGACTTTTCAAACAGTTTacgaatgtaaatgtaaaaaaaacggATGTATTTTTGGCTGTTAGACAGAATGTACACTGCAAAAACTAATCGTTCTTGAGGTTTTAggcttgtttcaagtccaaatatgtAAGAATTCTtagagaagcattttctagactagttaaaaattatgttttgtgtCAAAATTAAGGgaagttttccttaaaacaagcataaTAATGTGCCGTTGGAGTGAGTAAAATAGTATTGCTATCAgattaaaataagtttattttattattaagtttattattgcattttttataattaattgtttaattcacccaattatttagcttgttttaataaataacttacttAATTTGGACGACTtgtgtcttaaaaaaaaacagtattttttgctAGTCTTGAAAGGCTTCTTGCTTtaggaatttgtagatatttggactaaaatgggacaaaaactaagtaagaaaacatttatttatttatttttgcagtgtattgcCTTCCAATGCTCCCGCCGTTTCAGTGTTATTCCATAAAACACTACGAATGTGATTTGGGAAACGGTTGTGTCTCTAATGAGCAggtgtgatttttattttggaaaaaaaatgaagaaaaaaaaattcataaaaa

Function

symbol description
ube2d4 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D4 (ubiquitin conjugating enzyme E2 D4 (putative)).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-86 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D4 (ubiquitin conjugating enzyme E2 D4 (putative)).

Ensembl:

ensembl_id ENSDARG00000015057

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070563 True 1740 mRNA 0.40 7 52284075 52297799

Neighbor

gene id symbol gene type direction distance location
XLOC_036043 FQ790367.1 coding upstream 121111 52161861 ~ 52162964 (+)
XLOC_036042 gna14a coding upstream 297078 51958968 ~ 51986997 (+)
XLOC_036041 NA coding upstream 505484 51775422 ~ 51778591 (+)
XLOC_036040 klhl22 coding upstream 557173 51707781 ~ 51726902 (+)
XLOC_036039 NA coding upstream 697372 51581729 ~ 51586703 (+)
XLOC_036045 dbnlb coding downstream 16743 52314542 ~ 52350684 (+)
XLOC_036046 arid5a coding downstream 79717 52377516 ~ 52403265 (+)
XLOC_036047 gins4 coding downstream 117815 52415614 ~ 52431522 (+)
XLOC_036048 zgc:77112 coding downstream 144823 52442622 ~ 52447101 (+)
XLOC_036049 FO704661.1 coding downstream 181227 52479026 ~ 52490474 (+)
XLOC_036038 NA non-coding upstream 1118226 51160606 ~ 51165849 (+)
XLOC_036035 CR855300.1 non-coding upstream 1316076 50966806 ~ 50967999 (+)
XLOC_036053 NA non-coding downstream 299589 52597388 ~ 52604066 (+)
XLOC_036056 NA non-coding downstream 353352 52651151 ~ 52652449 (+)
XLOC_036058 NA non-coding downstream 469656 52767455 ~ 52780637 (+)
XLOC_036060 NA non-coding downstream 581626 52879425 ~ 52887683 (+)
XLOC_036061 NA non-coding downstream 699741 52997540 ~ 53028669 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_02676712_02678594 UBE2D4, UBE2D4.L coding CI01000050 null 2676712 ~ 2678633 (+)