XLOC_036053


Basic Information

Item Value
gene id XLOC_036053
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52597388 ~ 52604066 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071972
CTGAGCACCGCTGGGCACGAGGAGTCAAACACAGCAGTCCAGCACCCATCAGGAAATCCAGCAGCAAACACCTAACAGAGCAACTTCCATCTCTGAGTGTTGTGGATGTGTCTGAATGGACTGGATGGATGAGAGCGGGTACAGAAAGGCCACGGGTCAGCGCTGAAACTGAGGATGCTTCTCACTGCAAACAAATAACACACACTCAGAAGATCAAGAGGGCAGATCTTTCATTAGCAGAATCCATGATGCCTGTGTCCAGCACAACCaatgacaaacaaaacaaaataaagGCTGGCCTGCGGCAGAGGTGCACAGTTAATAAAAGGAGAGCACACAGATGCAGTAACTCTACACTAGAGGGCGCCGGAGGTTCACGCTGGGTGGGCATTGCCTTTAATCCCATTCCAAAACCCAGCACACATTCCCTGTCCCGCAGCTTTCCCTTCAGAGATAGTGGACGATTAAATGGAAAACTGCCCAGTCTGAGCACGCAGCACCCAAAGCCCAAACACAGCAGCGGACACAGCTCAACATTAAGCCTGAGTTTGGCCTCAGTGAAATGCTGGAGAGGAAGCTGAGAATGACCCGCTAGTATGTTACATAATCAGTCTGCTCTGTGCTAT
>TCONS_00070579
ataataccgatattaataataaaaataataagtataataataataataataattaaaataataataataatattaataataatagggaattattattattattattatttttactataattgtaataactataataataataataaaaaataataataataataacaataataataatatttatgtaatgatGAGTGGTGTTTGCAGTTAAACACAGTGGAGATCAGTGCTGTGAGCAGCAGCTCGGAGTTTACTCAGCATCCGGTGTTCATGTGGATCCCAAATCTGCAGCATCAGCCTCAGCGGATACACACGCAGCAGTCTCCATTTCCAAAGATTGCTATAAAAGAGTTAATCTGCCTTCCATCATGTCAGCTGTCCAAGCCATCCAAAGCGGTGAGGAAATATAAGCAAGGTGTCTTCtatggtgtttatttatttaaatacaaaaatagtacaaaaataatgta
>TCONS_00071973
GTTTGCAGTTAAACACAGTGGAGATCAGTGCTGTGAGCAGCAGCTCGGAGTTTACTCAGCATCCGGTGTTCATGTGGATCCCAAATCTGCAGCATCAGCCTCAGCGGATACACACGCAGCAGTCTCCATTTCCAAAGATTGCTATAAAAGAGTTAATCTGCCTTCCATCATGTCAGCTGTCCAAGCCATCCAAAGCGGCTGGCCTGCGGCAGAGGTGCACAGTTAATAAAAGGAGAGCACACAGATGCAGTAACTCTACACTAGAGGGCGCCGGAGGTTCACGCTGGGTGGGCATTGCCTTTAATCCCATTCCAAAACCCAGCACACATTCCCTGTCCCGCAGCTTTCCCTTCAGAGATAGTGGACGATTAAATGGAAAACTGCCCAGTCTGAGCACGCAGCACCCAAAGCCCAAACACAGCAGCGGACACAGCTCAACATTAAGCCTGAGTTTGGCCTCAGTGAAATGCTGGAGAGGAAGCTGAGAATGACCCGCTAGTATGTTACATAATCAGTCTGCTCTGTGCTAT
>TCONS_00070580
TACTAGTTTTTAGTATATGTGCATTGATCATATACTTTATTCATAAATAACTGCTGTTTGTCTACAAAGGTCTCCATTTCCAAAGATTGCTATAAAAGAGTTAATCTGCCTTCCATCATGTCAGCTGTCCAAGCCATCCAAAGCGGCTGGCCTGCGGCAGAGGTGCACAGTTAATAAAAGGAGAGCACACAGATGCAGTAACTCTACACTAGAGGGCGCCGGAGGTTCACGCTGGGTGGGCATTGCCTTTAATCCCATTCCAAAACCCAGCACACATTCCCTGTCCCGCAGCTTTCCCTTCAGAGGTGAGTGTTGGTGCTTTTGCGGCCAGATgaacaatattaaattaaataaatcctcAGTTTAGTAGTTTAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117780

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071972 False 626 lncRNA 0.50 5 52597388 52604066
TCONS_00070579 False 470 lncRNA 0.28 2 52601058 52601775
TCONS_00071973 False 530 lncRNA 0.51 4 52601257 52604066
TCONS_00070580 True 377 lncRNA 0.43 2 52601557 52602702

Neighbor

gene id symbol gene type direction distance location
XLOC_036052 stambpb coding upstream 49431 52530889 ~ 52547957 (+)
XLOC_036051 si:ch1073-392o20.2 coding upstream 66882 52515188 ~ 52530506 (+)
XLOC_036050 RNF122 coding upstream 87071 52491436 ~ 52510317 (+)
XLOC_036049 FO704661.1 coding upstream 106914 52479026 ~ 52490474 (+)
XLOC_036048 zgc:77112 coding upstream 150287 52442622 ~ 52447101 (+)
XLOC_036054 ccn1l2 coding downstream 15299 52619365 ~ 52631064 (+)
XLOC_036055 si:dkey-90l8.3 coding downstream 33441 52637507 ~ 52647790 (+)
XLOC_036056 NA coding downstream 47085 52651151 ~ 52652449 (+)
XLOC_036057 bcl2l16 coding downstream 97745 52701811 ~ 52716316 (+)
XLOC_036058 NA coding downstream 163389 52767455 ~ 52780637 (+)
XLOC_036043 FQ790367.1 non-coding upstream 434424 52161861 ~ 52162964 (+)
XLOC_036041 NA non-coding upstream 818797 51775422 ~ 51778591 (+)
XLOC_036039 NA non-coding upstream 1010685 51581729 ~ 51586703 (+)
XLOC_036038 NA non-coding upstream 1431539 51160606 ~ 51165849 (+)
XLOC_036035 CR855300.1 non-coding upstream 1629389 50966806 ~ 50967999 (+)
XLOC_036060 NA non-coding downstream 275359 52879425 ~ 52887683 (+)
XLOC_036061 NA non-coding downstream 393474 52997540 ~ 53028669 (+)
XLOC_036062 NA non-coding downstream 413011 53017077 ~ 53017557 (+)

Expression


Co-expression Network