LOC110500517 (LOC106608821)


Basic Information

Item Value
gene id LOC110500517
gene name LOC106608821
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 44039952 ~ 44050765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577920.2
GCATTCCTTGTGTGGACAAAAGAAAGACACACTGACTGAACCAAAGATAATTTACATACGGCATAGGCTACCCAACCTGATCCACTGAAAAAATGTCTAAACTACAGTTGTTGCGTTTATTTTTAAATGAGCGTTTAACGGAGTCTGCTGCTGTGGAGATTTTCGAAGCAGTTGAGAAAGCGGTAGCGGAGTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGTTCACACCAGAGATACAACTATGTAGAATAGacTCCCTGCAGTTTTCTCTTGCTGTCTCTGAAGAGAAGGTTCCCCCTGAACAGCAGCACTGTGAGCAGGAGTGGAGCTCCAGTCTGGGGCAGGAGGACCCAGAGCCCACACAGAtcaaagaggaacaggaggaactcCGGATCAGTCAAGAGGAAGAGCGGTTTCAAGGGTTGGAGGCTGACATCACAGAGTTCAAATTCCCTCCTACCTGTGTGAAAAATGAATGTGATCAGGAGGACCCACTTCAGTCCGTGACTGAACAGACtatggagaacagagagagtgactCTAAACCAGTTGATCTCAAACCTTTTGGGACTGTGACCCACCTGAAGGGTCTCGACATTCCCTTTGACCCTCCAGATAATCAAAACAATGCCTCCAGTCACAGCTCTGCTACAAGCAGCGACCAAGTAGGACTTAACAGCAGCCCCCCATTGGATCTAATTGTGCACAAACTggctcacacaggggagaaactgtttagctgtggtgactgtgggaaaagcttcagtCAAAAGGAACACCTAGGGAACCATGTACgcattcacacaggggagaaaccgttTAGCTGTGGTGACTGCGGGAAAAGCTTCACTGTCAAGGGGAACCTAACTGTGCACAAACTGGCTCACACTGGAAAGAAACCATTTAGTTGTGGTGACTGCGGGAAAAGCTTCTATCAGAGCCAGGAACTAACTGCGCATATACGGACTCACACTGGGGAGAAACCGtttagctgtggtgactgtgggaaaagGTTTTATCACAAGATTACTCTAAACCGACACATTCAGACTCACTCAGGAGAGAAACCGTTTatctgtggtgactgtgggaaaagGTTTTATCACAAGATTACTCtaaacagacacattcagactcacacaggagagaaaccatttatATGTGGcgactgtgggaaaagcttcagtCAGAAGGAACACCTAGGGAACCATAcactgactcacacaggagagaaaccgtttAGCTGTGgagactgtgggaaaagcttcaggCAGAAAGGGACCTTAAATACGCATAAACTGACTCACACGGGAGTGAAATCATTTAGCTGTGGAgactgtgggaagagcttcattCTGAAGGGGTCCCTAAAGATGCATATACAGACTCACACAGGTGTGAAACCATTTATATGTGGAGACTGCGGGAAAGGCTTCTATCTGAAGGGAGACCTAGGTAAGCATATACTGACTCACACAGGtgagaaaccatttagctgtggaGACTGCGGGAAAAGCTTCAGGCAGAAGTCGGCCCTAAAGAcgcacacactgactcacactggagagaagccattTCACTGTGGAGACTGTGGGAAAAGATTCAGTCAGAATGGGGCCCTAAAGAAGCATTTATTGACTCACACAGGAGTGAAATCATTGTAGCTGTGGGGACTGTGGAAAAAGCTTCTATCAGAAAAGACGCCTAACTGAACATATCCAGACTCACCCAGGAGTTAAACAACATGACTGCTCAGTCTGTGACAGAACATGTGTTACGGCTCATCTGCTGAAGCATGTTAATAATGTCCTCAAAGAAAGAAACTGGGAGGACAAATACAGCTGCAAGCAGCCATGAAGGCTCCTGGCCACAATATTTCTTGAATTTTAATTAGAGCATTCTGTTAGTGAACCTTTTGAGTAAGATACTTTGCCACTTGGTTTTGATACTGCCTGGAGAAGGAGTGGCAATGCCGCAAAAATCAAGGCTTTTTAACCAATAactccaccccctcccccctAATGTAAATTTAGTTACTGAAACGTACTCGCAGTTGAGAAGATTTGTTAACAGTTTGACGTTCACAACTGAATTGCATTCTGTTTTTGGAGATACTGACACGTGCTTCGTAGTAGACCTTCCTTGTGGTGTCCTTAAGCCCctcgaggcaagtcagttaagaacaaattcttatttacaatgatggcctacaatgatggccaaaccctcccttaacctggACAACtcggggccaattgtgcgccgccctatgggactcaatCAGTACTAAGTTGTTGGATGGATCAAAGAGAAGTTGAGTAGTTTGGGTTAAGCTGGGTTTGGTGTGGACATGTCGTTTTGTTTTTACAAAATTGACACTATCTCCATCTTTTGATTAAATTCTTAGCTTTTCACATAGGAGTTCTTAACTTCTGTTTTGAGTTAATCGGACGTGGTTCATAGGAAGATTGTTAAAGATTTGTATGGTTCAAACTTCCAAAATGAATGAAAATCCAATATGGCAGAGGTCATAGCTCCTTGGGAGAGTCTCCTTTGGAAAAAAGTCTGTCCTcgactcctgtcctcctctccgtGAACCGGAAACTGATACGTCATTTGTTAGTAGCCGGACGGAGAGAAGTGTCATCCAAAACCCATTAGATAAGAAAGCCAGAGTTCCCGCTCCAAttaccttctcctccaatgggttttgagaaggagacaaggAGTATGCCATTTGAGATCTTCCCATAAGTACCCTTTCAGCAGCTAGCGCGGCATTCTTTCAGAATATGCCACACCCCCTTTGAATGGTCTGTTTTCTCAAAGGAGAAAAACATGCACCCGTTTTAAAACGATACACTACTTATCCTTTAGCGCGAGTGGAGAAGGGTAGTCTCATTTCATATGAGCGCATTTCGGTGAATCCCAAACCAGCCCCTTGCCGCTACCTACTCGTCCTCCGTTGTCACGTGTTGCTGACGAAACTAACGAGGATGACTTCCATCGAGTGGCAAGGGGATCAATAAACCCTTCGACTTCGGGACACACTAGTGACTTGAATGATGCGATTCATGTTCCATATTTTAATAATAAAATGCACATGAAATTCAAATGAACAATTGACTAGCAATACTCTTAACAGTTAAACTTATCATTTGGGAGGTATTTCATATGTTTTGAGTCAAGCAATGAAatccaacacaaacaaacacacatttccTATAATTAGGCAAACTCCAAACATATCTTAGTGCGTGTTGGGGATAGCACTTCACTCTGGAGCCTGCTTGGTTCGAAATGGCAATCAGAGGCGCTAATTAACTGCTACATCCAGGGCAAAATGGTTTACCCTCTTGATGGTGGAGAGAAATGTACGTTTTAAAGTGTTCCATTTCATACGTTTGTCTGAGCAAAAGGAATGACAATTTATGGTAAGAATAGGGAAAAGCAGAAATAACATTCATAGTCATACCCATCAAATGCATTTTATTTAATCACTTTTGGTTCtcttcaaacaaacaaaaacctaACTATTTACAATTCTTTAGGTTCTTTTTCTGAATGCATTTATGTTACTAAACTCATTCAAAAAGTTTAAGTGATGGAATTGAGCTGACTGGGTGAAAAAAGGGAAAATATCATTTGATAAATTGGTAAATTAATCATCTCCCCCAGGGGCATCACAATGCCAAAACATCAATCACTTTTGAACTTCAAGGATTAACAgaaaatctgaaaaatgtcaacaGCTGGAGACTTGACAGACTAACATATCATAACCACCAGTCATTCAACAGCAGACTAGAATAATTGATGGCTACATTTGAAACACAGCTCCCTGCAAACCAGCATGCCACTGGCATCCTTATCTGACCGATGGAATTTGAAATAATGACAAtaccctgctctctctgtcttcacaAAGTACTTCAGTGACATTTTAGATATTCCCCAATCTGCACTAACCAATACATCAACTGAACCAAATGGACTGAATAGTGTATTCAAAACCGACCCAGCTAAAACGTAActttctgagaaccatatgtttatTAGTTTGGTGAGAGTCTGGTTGTGTTGATTTTGCATATGACCTttccacaactttctgggaatgttgcaggatagttgcttggctttggaacattctcagcacttTTAAGTaacttgaagaaaaaaaaatgtaattacttttaacagaatgtttcctaaaagttcaaacgtGGTTACATTTAAGTTCAGTTTTGGTAATGTTTTAAGAacattctccaactggtttgacattgggaatgttctcatagttcagagaacgttaaacaacattcttctgtgggaatttcagtacttcagcataacgtttcctcatggttctatttaaagttcTCATTGTTTAAAACTTCCTATAAAAACTTTAATGTTCAGAGAACGTTATTTCAAAACatacattctgttctcagcaTCACCAAAACACTCTTGTTAAGTGTGTTTGGGTGTGGTGGCCgcacccactaattggccacacctgtgCTTGAGGAGTGCTGTTTCCTTTAAAAATgtggtctgtttgaatagactcaAAGGAACAGATTTGTATGTGTAAAACAAACAATGGCACACTAGCTCCATCCTGATGGCACCGTAGACTAATTCCAGAAGATTATAGGTTCGAATCTCACAGATGCCAtgtcacaatttttttttatgtttgcatGAATTTCCATGTGTCTGATCTGTGCTTGGAGTTTAAACAGTTAACCCCAAATAAGCTAGCGGTGTTCTTGAAACGTTCAGTTTCTTATTGAAACTTTCAGTGAAAGTTAAggaagttatttaaaaaaaacttcaaGTACATAGAATTTCCGTTCTCAGTGTTTAATAAAACCTCAGAAGGGAACTTcaaaggaaccagagtaaaacgttgtaagaacctccctgcaacctataaataaacattcccagaacaggcaaagTTTTCACTGCTGTTCTCAGAACGTACACAGAacgtacattttttttcttctgttttaCCAGTTAGGAAAGGTATGGCTTCTTCCCACAACCAATGGGAAACAAAAAAACAcgacgttcccacaacttccaaggaaccaaatgtgctagctgggtagaaAGCCAAAGCTAACATATATGGAAAAACCTGAACCACAGCCATATCCTACAACGGAAGTTAATACTTGTTTGTCGGACCAACCAGAACTGATTCTAAATAGGAAAACACGTTCAAAAGAATGAATCCATTCAACCTAACTGACAGGGGAAGTATTGGGTTTCTCCATACGAAAAACAAACTAACGAGTTTCAGAACTGTTCCAAGCACCTTCAG
>TU1993469
AGACTCACACAGGTGTGAAACCATTTATATGTGGAGACTGCGGGAAAGGCTTCTATCTGAAGGGAGACCTAGGTAAGCATATACTGACTCACACAGGtgagaaaccatttagctgtggaGACTGCGGGAAAAGCTTCAGGCAGAAGTCGGCCCTAAAGAcgcacacactgactcacactggagagaagccattTCACTGTGGAGACTGTGGGAAAAGATTCAGTCAGAATGGGGCCCTAAAGAAGCATTTATTGACTCACACAGGAGTGAAATCATTGTAGCTGTGGGGACTGTGGAAAAAGCTTCTATCAGAAAAGACGCCTAACTGAACATATCCAGACTCACCCAGGAGTTAAACAACATGACTGCTCAGTCTGTGACAGAACATGTGTTACGGCTCATCTGCTGAAGCATGTTAATAATGTCCTCAAAGAAAGAAACTGGGAGGACAAATACAGCTGCAAGCAGCCATGAAGGCTCCTGGCCACAATATTTCTTGAATTTTAATTAGAGCATTCTGTTAGTGAACCTTTTGAGTAAGATACTTTGCCACTTGGTTTTGATACTGCCTGGAGAAGGAGTGGCAATGCCGCAAAAATCAAGGCTTTTTAACCAATAactccaccccctcccc
>TU1993468
TAGCTCCTTGGGAGAGTCTCCTTTGGAAAAAAGTCTGTCCTcgactcctgtcctcctctccgtGAACCGGAAACTGATACGTCATTTGTTAGTAGCCGGACGGAGAGAAGTGTCATCCAAAACCCATTAGATAAGAAAGCCAGAGTTCCCGCTCCAAttaccttctcctccaatgggttttgagaaggagacaaggAGTATGCCATTTGAGATCTTCCCATAAGTACCCTTTCAGCAGCTAGCGCGGCATTCTTTCAGAATATGCCACACCCCCTTTGAATGGTCTGTTTTCTCAAAGGAGAAAAACATGCACCC
>TU1993457
TACCCATCAAATGCATTTTATTTAATCACTTTTGGTTCtcttcaaacaaacaaaaacctaACTATTTACAATTCTTTAGGTTCTTTTTCTGAATGCATTTATGTTACTAAACTCATTCAAAAAGTTTAAGTGATGGAATTGAGCTGACTGGGTGAAAAAAGGGAAAATATCATTTGATAAATTGGTAAATTAATCATCTCCCCCAGGGGCATCACAATGCCAAAACATCAATCACTTTTGAACTTCAAGGATTAACAgaaaatctgaaaaatgtcaacaGCTGGAGACTTGACAGACTAACATATCATAACCACCAGTCATTCAACAGCAGACTAGAATAATTGATGGCTACATTTGAAACACAGCTCCCTGCAAACCAGCATGCCACTGGCATCCTTATCTGACCGATGGAATTTGAAATAATGACAAtaccctgctctctctgtcttcacaAAGTACTTCAGTGACATTTTAGATATTCCCCAATCTGCACTAACCAATACATCAACTGAACCAAATGGACTGAATAGTGTATTCAAAACCGACCCAGCTAAAACGTAActttctgagaaccatatgtttatTAGTTTGGTGAGAGTCTGGTTGTGTTGATTTTGCATATGACCTttccacaactttctgggaatgttgcaggatagttgcttggctttggaacattctcagcacttTTAAGTaacttgaagaaaaaaaaatgtaattacttttaacagaatgtttcctaaaagttcaaacgtGGTTACATTTAAGTTCAGTTTTGGTAATGTTTTAAGAacattctccaactggtttgacattgggaatgttctcatagttcagagaacgttaaacaacattcttctgtgggaatttcagtacttcagcataacgtttcctcatggttctatttaaagttcTCATTGTTTAAAACTTCCTATAAAAACTTTAATGTTCAGAGAACGTTATTTCAAAACatacattctgttctcagcaTCACCAAAACACTCTTGTTAAGTGTGTTTGGGTGTGGTGGCCgcacccactaattggccacacctgtgCTTGAGGAGTGCTGTTTCCTTTAAAAATgtggtctgtttgaatagactcaAAGGAACAGATTTGTATGTGTAAAACAAACAATGGCACACTAGCTCCATCCTGATGGCACCGTAGACTAATTCCAGAAGATTATAGGTTCGAATCTCACAGATGCCAtgtcacaatttttttttatgtttgcatGAATTTCCATGTGTCTGATCTGTGCTTGGAGTTTAAACAGTTAACCCCAAATAAGCTAGCGGTGTTCTTGAAACGTTCAGTTTCTTATTGAAACTTTCAGTGAAAGTTAAggaagttatttaaaaaaaacttcaaGTACATAGAATTTCCGTTCTCAGTGTTTAATAAAACCTCAGAAGGGAACTTcaaaggaaccagagtaaaacgttgtaagaacctccctgcaacctataaataaacattcccagaacaggcaaagTTTTCACTGCTGTTCTCAGAACGTACACAGAacgtacattttttttcttctgttttaCCAGTTAGGAAAGGTATGGCTTCTTCCCACAACCAATGGGAAACAAAAAAACAcgacgttcccacaacttccaaggaaccaaatgtgctagctgggtagaaAGCCAAAGCTAACATATATGGAAAAACCTGAACCACAGCCATATCCTACAACGGAAGTTAATACTTGTTTGTCGGACCAACCAGAACTGATTCTAAATAGGAAAACACGTTCAAAAGAATGAATCCATTCAACCTAACTGACAGGGGAAGTATTGGGTTTCTCCATACGAAAAACAAACTAACGAGTTTCAGAACTGTTCCAAGCACCTTCAGTAGAAGAGAGACAAACCCATTATCAACTGTATAATGGTATACATATAGCAACAAGTATCATAGCCACTCAATCTGTTGAGTAAACCTTGACTCGTATACAGCCATTCAATACCATTAGCTACGGTAGACGCTTCTAATATACAGGGACATAAGTCATTACAAATGGTCAGTAGTCAAATGTTTAGGGACAATTTAGGCTACTCCGAGAACGCCAAGAATAAATATATCCTCCATTTTAAGGTGTGGTAAGCACCAAGATAAAACAGTTGAACATGTTTCAAATCAAGTCTCacaaaaacagcttcttagcaaagaccaatttatcaagcaagaatttagcaaggactgtctgggagtggtctgcgTGGGGAGGGAAActaaactagctgttattggcagagaggtttggaacgctttttcttattggtctatgtCACCATGCAGGCAAatactccatcccaccaaaatagTATTTTCAAATAGCTCTTAAACTAAAAGAGCATTAACATTTTCACAGTTTTACAGTATTATTcaaacctcagtgtggaaatatactatatataacgtcgttttttttttgggtgcactgggcctttaacataCCCTTCCAAGTCAGCTCAGCTCCACACTATACTCCAGACTTCTCATTCCTCACCAACTAAATGTATAGGCATTTAAAACTGGATATCTGAAAAGAAACACTCTTGCTTTCAAAAAAGGCaaaccaccatcatcatcatcattgtcgtAAGGGGTTTTCTACAGTTCTACTTTCATGCTAACGTGCGATAGATGCTGGACAGAAATAACGTAACATACAACAGTATTGTTAACCAATAAGACAGTCCTGTCCAGTAAGTAGAACAGACCTCCCTTCAAATGCTATTGTCCTTATGTTCTCTTACTGTTTATTGAATATTTAGAGTTTGCCATACAAGGCAGATCTGTACAGTTAAGGCATGTTGaacagaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577920.2 False 5353 mRNA 0.42 2 44039952 44049588
TU1993469 False 634 lncRNA 0.45 1 44045628 44046261
TU1993468 False 315 lncRNA 0.47 1 44046776 44047090
TU1993457 True 2845 lncRNA 0.37 2 44047717 44050765

Neighbor

gene id symbol gene type direction distance location
LOC118942933 NA coding upstream 20051 44012853 ~ 44019901 (+)
LOC110500847 NA coding upstream 630910 43405498 ~ 43409042 (+)
LOC118942788 NA coding upstream 635205 43397554 ~ 43404747 (+)
LOC110500510 ccnb1ip1 coding upstream 654874 43382881 ~ 43385078 (+)
oxa1l LOC106608836 coding upstream 685515 43346414 ~ 43354437 (+)
pop7 pop7 coding downstream 48349 44097937 ~ 44099926 (+)
LOC110500520 LOC106608811 coding downstream 76494 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding downstream 77086 44126674 ~ 44128053 (+)
LOC110500528 tmem256 coding downstream 396598 44446186 ~ 44451532 (+)
LOC110500529 LOC106608720 coding downstream 411750 44461338 ~ 44480565 (+)
G1740649 NA non-coding upstream 122489 43917239 ~ 43917463 (+)
G1740647 NA non-coding upstream 123673 43916008 ~ 43916279 (+)
G1740507 NA non-coding upstream 402238 43637307 ~ 43637714 (+)
G1740457 NA non-coding upstream 504999 43533843 ~ 43534953 (+)
G1740453 NA non-coding upstream 513226 43524736 ~ 43526726 (+)
G1740731 NA non-coding downstream 110242 44159830 ~ 44160067 (+)
G1740735 NA non-coding downstream 121243 44170831 ~ 44171265 (+)
G1740736 NA non-coding downstream 123421 44173009 ~ 44173251 (+)
G1740738 LOC106608803 non-coding downstream 125604 44175192 ~ 44181626 (+)
G1740739 LOC106533889 non-coding downstream 140391 44189979 ~ 44190321 (+)
G1740412 LOC106608825 other upstream 569627 43469818 ~ 43470325 (+)
G1740398 NA other upstream 588785 43447050 ~ 43451167 (+)
G1740366 LOC106608832 other upstream 649653 43389189 ~ 43390299 (+)
LOC110500499 ubil other upstream 771809 43267057 ~ 43268143 (+)
G1740752 NA other downstream 163198 44212786 ~ 44213230 (+)
fcer1g LOC106608748 other downstream 1394939 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 1435684 45485247 ~ 45517233 (+)
G1740699 NA non-coding upstream 2190 44043225 ~ 44043438 (+)
G1740698 NA non-coding upstream 4161 44041146 ~ 44041467 (+)
G1740697 NA non-coding upstream 4997 44040364 ~ 44040631 (+)

Expression


Co-expression Network