LOC110500510 (ccnb1ip1)


Basic Information

Item Value
gene id LOC110500510
gene name ccnb1ip1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43382881 ~ 43385078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577912.2
gctagctattaAACCTTTAGCATCAAAACATTCCTCAAACGTCCTACTTTTGCCCAATTAAACTGGCAAGTTTGTTGAACCCATTGAGTATCGTACACAGCTACATTTTTATAGAGTTGTAGCTAGCCACTAATTTCAGAAAGAAATGTTAGAACTAACGTTACAGGTATTTGTAGTAGCAGTATGAcagttagctagcatgctagtatGCTAAGGATGGCAGAGGTTGGATGTTGCATACCTTGTATTGAGACACGTTACATCATCAACGAAACTTTACATCATCAACCTCTGTGTGAAGTGAGTGTATGAAGTTTCACCAAGTTGTTCTTGTCCCCGACAGCCATGTCTATGTGCGACGACACTCTGCTCTGCAACTACCCAAAGTGTCGGGCGAAGCTGTGTGGGTTCGCCTGGGTCACAGCTTGCTCTCACGCCTTCTGTGACCAACATGGATCCGGAGAGTTCAGCCGCTCCCCGGCAATATGCCCGGCCTGCTCCTCTGCACTCTCGGGAAAGCTGGACATCGTGCGCACTGAGCTGTCGCCATCTGAGGAGTACAAGGCCATGGTGTTGGCGGGACTGAGGCCAGAGACAGTGCTGGACATAAGCGCCCGTGCCCTGGCTTTCTGGACTTACCAGgtgcACCAGGAGCGTATGTTCCAGGAGTACAGTCTGTCCCGGGCCGAGGGTCAGGTGAAACAGATGGAGAAGGTGCTGACCCAGCAGAACCAGAGCAGAGAGCTGGAGCTCAATGCCATGAGAGGGGAGGTCACCTCACTGAAGAAGGTGATGGAGGAGTACAAGAGGAAGTACAGTGAGGTATCAGAGCGTCtgatggagaggaacagacagtACCAGAAGCTACAGGGGCTCTATGACTCGCTGAGGCTACGCAACATGGTGGTGGGGGACAGAGAGGCACCACGCCAGCCAGGACCCCCGGAGTTCAACACAGGGGTGGTCAGGAAGCCCTCTCCCCGAGGTAGTCCTCACTTCCTGGGCATGGGCCCTGAGGGGGACAGCCGCCTTTTCTCCTCCCTGGAGCCCGATGCTGGAGCCAAGACCTTCTTCCAGTTCAGCTCTCCTGCCAGAGACAGGGGCCGGGCCTTACTCAAGAAATACTGAGACTAGAATTCCAATTCTAGAACTCCAGgattagaatgaatagaataaTTGTATGTCTGACTGAGGCAACGCTGGTTGGGTACCTGGCTGCTGGATCAATGACAGCATTATCATAGTGTAGACTGTCAGGTTATCTAAGGATGGTTTGATATTCATATTGTAGTTGCCTTTTTCTTACCTGAAGTTACTGTATCTTGACAAAATGCTCTGATACAACATTTATGTTTGCATTGCACTTATTTTGTCAATAAAATTCAGCATGACCATTGTAA

Function

symbol description
ccnb1ip1 Enables identical protein binding activity. Predicted to be involved in chiasma assembly. Predicted to act upstream of or within blastocyst formation and spermatid development. Predicted to be located in condensed nuclear chromosome. Predicted to colocalize with synaptonemal complex.

NR:

description
E3 ubiquitin-protein ligase CCNB1IP1

GO: NA

KEGG:

id description
K10639 CCNB1IP1, HEI10; E3 ubiquitin-protein ligase CCNP1IP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577912.2 True 1400 mRNA 0.50 4 43382881 43385078

Neighbor

gene id symbol gene type direction distance location
oxa1l LOC106608836 coding upstream 28444 43346414 ~ 43354437 (+)
LOC110500504 NA coding upstream 37102 43335680 ~ 43345779 (+)
LOC110500503 LOC106608839 coding upstream 59007 43305093 ~ 43323874 (+)
LOC110500501 NA coding upstream 83576 43287190 ~ 43299305 (+)
LOC110500500 LOC106596943 coding upstream 104715 43268610 ~ 43278166 (+)
LOC118942788 NA coding downstream 12476 43397554 ~ 43404747 (+)
LOC110500847 NA coding downstream 20420 43405498 ~ 43409042 (+)
LOC118942933 NA coding downstream 627775 44012853 ~ 44019901 (+)
LOC110500517 LOC106608821 coding downstream 654874 44039952 ~ 44050765 (+)
pop7 pop7 coding downstream 712859 44097937 ~ 44099926 (+)
G1740345 NA non-coding upstream 11052 43344536 ~ 43371829 (+)
G1740340 NA non-coding upstream 49188 43333476 ~ 43333693 (+)
G1740339 NA non-coding upstream 50314 43332130 ~ 43332567 (+)
G1740337 NA non-coding upstream 52539 43330070 ~ 43330342 (+)
G1740336 LOC106565892 non-coding upstream 53716 43328903 ~ 43329165 (+)
G1740367 LOC106608832 non-coding downstream 149 43385227 ~ 43386232 (+)
G1740388 NA non-coding downstream 45205 43430283 ~ 43432161 (+)
G1740411 NA non-coding downstream 77775 43462853 ~ 43463081 (+)
G1740408 NA non-coding downstream 79752 43464830 ~ 43466342 (+)
G1740312 r1441 other upstream 55143 43255653 ~ 43327738 (+)
LOC110500499 ubil other upstream 114738 43267057 ~ 43268143 (+)
G1739440 vax2 other upstream 880524 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 1027554 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 1094381 42285056 ~ 42288500 (+)
G1740366 LOC106608832 other downstream 4111 43389189 ~ 43390299 (+)
G1740398 NA other downstream 61972 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 84740 43469818 ~ 43470325 (+)
G1740453 NA other downstream 139658 43524736 ~ 43526726 (+)
G1740752 NA other downstream 827708 44212786 ~ 44213230 (+)

Expression


Co-expression Network