cxcl8c (cxcl8c)


Basic Information

Item Value
gene id cxcl8c
gene name cxcl8c
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42285056 ~ 42288500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001281349.1
ATGAACACCGCAAGCATAACCATCATTCTGCTCACACTTCTGTCCATCTTCTCAACAACTGAAGGGATAAAGCAACCACGGGTTCTACGCTGCCTTTGCCCCAAAGTGCAGGCTGGTCTTATTCCGTTCAGTGATTTGAAGAGTGTGTGGCACCTCTCTCCTCGCCCACACTGTTCAAAGACTGAAGTCATTGTCACACTCAAAAGGGGAGGTCAACTCTGCCTGGACCCAAAGAAACGTTTGGTGAAGATTCTGGTGGAGAGATCAACCAAAAGAATGCAGGAAAGCAAACGTTCTAAAGAGGTTGGAAGCGTCACTCCTGCCCTGTTACACTTGTCAACCAAATGA
>TU1991899
ATCATCCTTAGAGACCATTAGAGACCTACAGTAAAGCTGTCCTCCACGGGGTTGCATGTAAACGTATATCACCATGAACACCGCAAGCATAACCATCATTCTGCTCACACTTCTGTCCATCTTCTCAACAACTGAAGGGATAAAGCAACCACGGGTTCTACGCTGCCTTTGCCCCAAAGTGCAGGCTGGTCTTATTCCGTTCAGTGATTTGAAGAGTGTGTGGCACCTCTCTCCTCGCCCACACTGTTCAAAGACTGAAGTCATTGTCACACTCAAAAGGGGAGGTCAACTCTGCCTGGACCCAAAGAAACGTTTGGTGAAGATTCTGGTGGAGAGATCAACCAAAAGAATGCAGGAAAGCAAACGTTCTAAAGAGGTTGGAAGCGTCACTCCTGCCCTGTTACACTTGTCAACCAAATGATGGACGTGATTCAACTGGACTGCCTTCCCAGTGACCAATTCTGAAGCACCCACTAGAATACTATGAATCCGATTGGGATATTGCACTGGGAAATAATTATCTTGAGTGGAAGGGTAAATTGTGGCATTGTGTGCCCATTTTCTCTATCCACGCACGACTTCATTGCCGTCTCATATATCACACCCAAATATATCATCTTATATGAATTATATGTCCCTTCACTGTTTTGGTATGTTTATtacatataattttttttactaCTACTTATATGTTAATTATATCTTCACCTGTGAAAAACACAGGTAGGGTCAGAAGGAGGAGTCCTTAAGAAGAGAGCTGCATATAGGTAACTGAAAATAGTCCTTTATAACAGGACTTAAAGACAGTGTCTGTCTATTGATGCTTTCATTTTCTAACTTGTCCAAGCAGGCAAATAAAAACAACATATTCATATCTGCTGACTGTCTCTGTATAACGTTCCACTTTCAGTCAAGCTTTTGGTTTCCAGACAAAAAAAAAGCTCTATAGCAAAGACAATGGCAGAGATGTTGGCAAACTAATGTCGTTCCCTATGTCCCACAATTTcttatatagcgcactacttttgaacagagccctatgggcccttgtcaaacatagtgctctatatagagaacagggttccatttgggatgcagccagtgTGTTTTGATGCCTTGGCCTGTGATGACAATGTCTCACACAGTGCCTGCAGAAGCTGCAGCATGTGACTTACTGTTGAAGGTTATTACTAAAGACAACATGGACAAGTCATTGCATCTTCTTTTGTACCCTGGCCAAAACCCTCATTTACCAAAACACAGAGGTCTTGGTATGGTGCCAATACTTTAAGAAAAAGACTAATTGTGAGAACATGGAAATAGAATGAGCCCGGATTATTTGCATTAGTTTTGTGGGAAGCACATGCAGAGAACAACATTTGGAGCCAGTTTCTTAGACACAGATACAtcaagcctagtcctggactaaaagtATTTTTAAATTGAGATTCTCCATTAATTTGAGCATGCTTTTTTAGCCCCGAGCTAAGTTTAGActgaatctgtgtctgggaaaccagccctgtGTGACAAATGACAGCAGTTTTAAGACGAATAGGTTCAACTTTTgttcatatatttttttcttaGAGTATTTCTGAGTTTAATGTCTTAGTagaatacatacagtggggagaacaagtcaTGTAtggcaagatcttggccaacaacctccttccctcagtaagagcattgaaaatgggttgtggctgggtcttccagcatgacaacgacccgaaacacacagccagggcaactaaagagtggctctgtaagaagcatctcaaggtcctggagtggcctagccagtctccagacctgaacccaatagaaaatctttggagggagctgaaagtccatattgcccagcgatagccccgaaacctgaaggatctggagaaggtctgtatggaggagtgggccaaaatccctgctgcagtgtgtgcaaacctggtcaagaactacaggaaacgtatgaactctgtaattgcaaacaaaggtttctgtaccaaatattaagtacTGCTCTTCTGATgtgtcaaatacttatgtcatgcaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0060326 cell chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001281349.1 False 348 mRNA 0.48 4 42285129 42286862
TU1991899 True 2059 TUCP 0.42 4 42285056 42288500

Neighbor

gene id symbol gene type direction distance location
LOC110500456 LOC106608882 coding upstream 64505 42213444 ~ 42220624 (+)
LOC110500450 clcn3 coding upstream 100125 42119272 ~ 42185004 (+)
LOC118942801 NA coding upstream 152803 42120391 ~ 42132326 (+)
trnas-gcu-264 NA coding upstream 194408 42090640 ~ 42090721 (+)
trnas-gcu-263 NA coding upstream 196379 42088669 ~ 42088750 (+)
si:dkey-185m8.2 LOC106608874 coding downstream 67694 42354556 ~ 42370239 (+)
si:ch211-1o7.2 ankrd53 coding downstream 120788 42407650 ~ 42410829 (+)
LOC110500464 NA coding downstream 186405 42473267 ~ 42482530 (+)
trnak-cuu-149 NA coding downstream 257522 42544384 ~ 42544456 (+)
trnan-guu-198 NA coding downstream 260205 42547067 ~ 42547140 (+)
G1739301 NA non-coding upstream 33484 42251422 ~ 42251645 (+)
G1739298 LOC106608879 non-coding upstream 38236 42246311 ~ 42246893 (+)
G1739297 NA non-coding upstream 39379 42245530 ~ 42245750 (+)
G1739294 NA non-coding upstream 44735 42240118 ~ 42240394 (+)
G1739293 NA non-coding upstream 45928 42238757 ~ 42239201 (+)
G1739366 NA non-coding downstream 63901 42350763 ~ 42350977 (+)
G1739370 NA non-coding downstream 72772 42359634 ~ 42359935 (+)
G1739374 NA non-coding downstream 91810 42378672 ~ 42379089 (+)
G1739385 NA non-coding downstream 95529 42382391 ~ 42382726 (+)
G1739397 NA non-coding downstream 103253 42390115 ~ 42390392 (+)
G1739103 NA other upstream 387273 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1255993 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 1287809 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1731276 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1881444 40401452 ~ 40404840 (+)
G1739440 vax2 other downstream 214487 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 968791 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 980352 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 1102327 43389189 ~ 43390299 (+)

Expression


Co-expression Network