LOC118942801


Basic Information

Item Value
gene id LOC118942801
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42120391 ~ 42132326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956510.1
TCTCCGTGCAGCTACATAtcaaggcaaagagagagagagaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagagaaaggcaaagagagagagagaaaggcaaagagagagagagagaaagagagagagagaggggcaaagagagagagagaaaggcaaagagagagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagaggcaaagagagagagagagaggcaaagagagagggagagaggcaaagagagagggagaaaggcaaagagagagagagaaaggcaaagagagaggcagagagagagagaaaggcaaagagagagaggcaaagagagagagagaggtaaagagagagaggcggagagagaggcaaagagagagagagagagagaggcaaagggagagagagagagaggcaaagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagaggcaaagagagagagagagagaggcaaagagagagagaggcaaagagagagagagagagagaggcaaagagagagagaggcaaagagagagagagaggcaaagagagagagaggcaaagagagggagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagagagaggcaaagagagagagagagaggcaaagagtggcaaagagagagagtggcaaagagagagagaggcaaagagagagagagaggcaaagagagagagagaggcaaagagagagagagagaggcagagagagagagaggcaaagagagagagagagagaggcaaagagagagaggcggagagagaggcaaagagagagagagggagagagagaggcaaagagagagaggcggagagagaggcaaagagagagagagggagagagagagagagagagagaggcaaagagagagagagagaggcaaagagagagaggcaaagagCAGCTCAAGTTCAACAGGGGATACCACAGAAACAGCTACAACAGCATCTCCAGTGCCCAGCCCTGTGAtctgagagtgtgtttgtgttcccACGCAGGGCACTGCCTGCGTAGCACGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956510.1 True 1455 mRNA 0.50 5 42120391 42132326

Neighbor

gene id symbol gene type direction distance location
trnas-gcu-264 NA coding upstream 29670 42090640 ~ 42090721 (+)
trnas-gcu-263 NA coding upstream 31641 42088669 ~ 42088750 (+)
LOC110500448 LOC106608889 coding upstream 67753 42006315 ~ 42052638 (+)
LOC110500845 LOC106608891 coding upstream 145205 41942621 ~ 41975186 (+)
trnan-guu-197 NA coding upstream 240557 41879761 ~ 41879834 (+)
LOC110500456 LOC106608882 coding downstream 81118 42213444 ~ 42220624 (+)
cxcl8c cxcl8c coding downstream 152803 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 coding downstream 222230 42354556 ~ 42370239 (+)
si:ch211-1o7.2 ankrd53 coding downstream 275324 42407650 ~ 42410829 (+)
LOC110500464 NA coding downstream 340941 42473267 ~ 42482530 (+)
G1739131 NA non-coding upstream 183015 41935433 ~ 41937376 (+)
G1739115 NA non-coding upstream 193743 41920599 ~ 41926648 (+)
G1739078 NA non-coding upstream 321239 41798923 ~ 41799152 (+)
G1739070 NA non-coding upstream 332843 41778827 ~ 41787548 (+)
G1738925 LOC100380853 non-coding upstream 350544 41769501 ~ 41769847 (+)
G1739084 NA non-coding downstream 10027 42142353 ~ 42143265 (+)
G1739286 LOC106608879 non-coding downstream 95788 42228114 ~ 42228789 (+)
G1739288 NA non-coding downstream 96789 42229115 ~ 42229351 (+)
G1739289 NA non-coding downstream 97093 42229419 ~ 42229623 (+)
G1739290 NA non-coding downstream 98888 42231214 ~ 42231492 (+)
G1739103 NA other upstream 222535 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1091255 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 1123071 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1566538 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1716706 40401452 ~ 40404840 (+)
G1739440 vax2 other downstream 369023 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1123327 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 1134888 43267057 ~ 43268143 (+)

Expression


Co-expression Network