LOC110500464


Basic Information

Item Value
gene id LOC110500464
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42473267 ~ 42482530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470111.2
aaaaacccaaagttaatgcctaaacttaaccttaaacacttagaAATGTGAAGTTTGCAACAACTGCAAAATGTGATGTTttagaaacatggatgaatgtctaattgTAACGTGAGACAGAGCCAGTTGAGCCGAGTAGTAGTGGTGCGAAGCTAGCCGAGTAGTAGAAGTTTGAAGCTAAGTTGCttgctctctgcctgcctgcatctcaggtccatctctcccttcaaTATTTGATGGAGGACGGTTTGAATTATGGATGTTGCCTATTGAAAAAAAACAGTGTTCAACAACAGCCCCAGTAGAACCACGGCAACAAGACACAAACAAAGACGTTTCCACAACTACAAGACCCAAATCGGTGCTACACTACGGCAACGAAAAAGGGACATTGGCTTAGTGGAACCCCCCGCAGCGCTCACTCTCCAGGTCATAGAGTGAGTTCATTGTTCAAGATGGATAAACAAAAAGCAAGAACGAGTGGTGCACAAAAAGAGTGCAAAAAAGCTTGATCTTATCAAGCTCATGACAAATTACAGAAGATAACCAGTGCTTGAATTGGACTGAAATGggtgccggtactgtttatatctAGGTACAGTAGCTCCACAATAcctttgagctaatattctataagaggaacaggagctctagcGGTAGAAGATTTGAGGTGCTGGTGCTCATCTCCGGTGAGCTCCTGACCAAGTCAAGCACAGCACATTAGCAAAGCTACCACCTCGCCCTCGACTGATGAAACACCATCGCAGGTGGAAGCTAGTAGACCTACTTATGCAGGAGCTAGCTAGCACTAGCAGCCTCCCAGTCCCGACAGAGACCTCACTGCCTGGGCCCAGCAATGACAGTAGCCTTGCTCCTCCTCTACTTCTTCCTCCCCTCGAGAATAGTGACAGTTCCTCTAGTGAGCGTGCCGGTCTtgtttctcctccttctctccccccaaaAACCAAGCTGACGACTGCCAGAGACCCAGcgatgttcaaatcaaattttatgagAGCAACCCACCTTCTGTGAATAACTGTTTTCGCCCTCTGCCTCCTTTTATAACCTGGAGCAGGAGCACAAGACGCAGGCTGTCGGTCCAAACAGCGAAGGTCTGAGCTGCAGCGCTCTGGTCGGAGCCAACTCTTTGAGACAATTTATGTttgatccgaaaatgtggtcggaggcgcTTTATGGATGGTGTGACGCAGGCCTAATTGATGCTCTATGCCACGTCGCCGTGCGCCTctcaaatgttgtaacaatgcggagggctccgtGTAGCTCCGCACTtgcatgattggttgacggtaggtgagggcgggaggtcctgtataaacacaaactcacctCCTTGACAAGAGCTCTGCTCGGcgaagcgcaagaagtatgaatgccctgaccaTATCACCGCAAATGCTGCACGGCCAATAGGGAcgtcggattgaccatgcagTGCCTTTAAGTGGCGCCTGACCTAAACATAGTTCGCCCTGCGTTCAGAGCTGTCATTGTTTTTTGTTGTAGGTCTTGCTCCAAGCGTCACTCCCCATGCTCCCCCGTGCTAGTGGTGATTGTGGCGCCGCCAGGCAgctgttattcatatttttgatcAAGTTTCGCCTGGTGAATTGTATTGCTCATGACACCATTCAATGGGTGACCTGTCATGACACCATCCAATAGGTGACCTGTCAGGAACCTGTGATTTGTTGTATaagaatttgccccaaacataacgctttgtattcaggacaaaaagatCACGCAAACACGAGGCATgtattggaatatttttattcccTACAGGCCTcgttcttttcactgtcatttgggttaatattgtggagtaattacaatgttgcctatccatcctcagttttctcatgaTCAaaaccattaaactctaactgttttaaaatca
>TU1992006
CCTCGCCCTCGACTGATGAAACACCATCGCAGGTGGAAGCTAGTAGACCTACTTATGCAGGAGCTAGCTAGCACTAGCAGCCTCCCAGTCCCGACAGAGACCTCACTGCCTGGGCCCAGCAATGACAGTAGCCTTGCTCCTCCTCTACTTCTTCCTCCCCTCGAGAATAGTGACAGTTCCTCTAGTGAGCGTGCCGGTCTtgtttctcctccttctctccccccaaaAACCAAGCTGACGACTGCCAGAGACCCAGcgatgttcaaatcaaattttatgagAGCAACCCACCTTCTGTGAATAACTGTTTTCGCCCTCTGCCTCCTTTTATAACCTGGAGCAGGAGCACAAGACGCAGGCTGTCGGTCCAAACAGCGAAGGTCTGAGCTGCAGCGCTCTGGTCGGAGCCAACTCTTTGAGACAATTTATGTttgatccgaaaatgtggtcggaggcgcTTTATGGATGGTGTGACGCAGGCCTAATTGATGCTCTATGCCACGTCGCCGTGCGCCTctcaaatgttgtaacaatgcggagggctccgtGTAGCTCCGCACTtgcatgattggttgacggtaggtgagggcgggaggtcctgtataaacacaaactcacctCCTTGACAAGAGCTCTGCTCGGcgaagcgcaagaagtatgaatgccctgaccaTATCACCGCAAATGCTGCACGGCCAATAGGGAcgtcggattgaccatgcagTGCCTTTAAGTGGCGCCTGACCTAAACATAGTTCGCCCTGCGTTCAGAGCTGTCATTGTTTTTTGTTGTAGGTCTTGCTCCAAGCGTCACTCCCCATGCTCCCCCGTGCTAGTGGTGATTGTGGCGCCGCCAGGCAgctgttattcatatttttgatcAAGTTTCGCCTGGTGAATTGTATTGCTCATGACACCATTCAATGGGTGACCTGTCATGACACCATCCAATAGGTGACCTGTCAGGAACCTGTGATTTGTTGTATaagaatttgccccaaacataacgctttgtattcaggacaaaaagatCACGCAAACACGAGGCATgtattggaatatttttattcccTACAGGCCTcgttcttttcactgtcatttgggttaatattgtggagtaattacaatgttgcctatccatcctcagttttctcatgaTCAaaaccattaaactctaactgttttaaaatc

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470111.2 False 1927 mRNA 0.47 2 42473267 42482530
TU1992006 True 1191 lncRNA 0.49 2 42474002 42482529

Neighbor

gene id symbol gene type direction distance location
si:ch211-1o7.2 ankrd53 coding upstream 62438 42407650 ~ 42410829 (+)
si:dkey-185m8.2 LOC106608874 coding upstream 103028 42354556 ~ 42370239 (+)
cxcl8c cxcl8c coding upstream 186405 42285056 ~ 42288500 (+)
LOC110500456 LOC106608882 coding upstream 252643 42213444 ~ 42220624 (+)
LOC110500450 clcn3 coding upstream 288263 42119272 ~ 42185004 (+)
trnak-cuu-149 NA coding downstream 61854 42544384 ~ 42544456 (+)
trnan-guu-198 NA coding downstream 64537 42547067 ~ 42547140 (+)
LOC110500468 LOC106608867 coding downstream 86702 42569232 ~ 42586213 (+)
faah2b LOC106608863 coding downstream 150863 42633393 ~ 42641281 (+)
c21h4orf48 cssa07h4orf48 coding downstream 172831 42655361 ~ 42661164 (+)
G1739422 NA non-coding upstream 10117 42462812 ~ 42463150 (+)
G1739408 NA non-coding upstream 69258 42403714 ~ 42404009 (+)
G1739407 NA non-coding upstream 70518 42402315 ~ 42402749 (+)
G1739398 NA non-coding upstream 82136 42390778 ~ 42391131 (+)
G1739397 NA non-coding upstream 82875 42390115 ~ 42390392 (+)
G1739434 NA non-coding downstream 8908 42491438 ~ 42491805 (+)
G1739438 NA non-coding downstream 14425 42496955 ~ 42497224 (+)
G1739788 NA non-coding downstream 25419 42507949 ~ 42508187 (+)
G1739831 NA non-coding downstream 100003 42582533 ~ 42584132 (+)
G1739836 NA non-coding downstream 110456 42592986 ~ 42599053 (+)
G1739103 NA other upstream 575411 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1444131 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 1475947 40955050 ~ 40997320 (+)
G1739440 vax2 other downstream 18819 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 773123 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 784684 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 906659 43389189 ~ 43390299 (+)
G1740398 NA other downstream 964520 43447050 ~ 43451167 (+)
LOC118942801 NA coding upstream 341676 42120391 ~ 42132326 (+)

Expression


Co-expression Network