G1739836


Basic Information

Item Value
gene id G1739836
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42592986 ~ 42599053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1992472
caaataaaaagtccAAACAAGTCCAAATAAAAACGCAATAAGTGCTTTGTCCCGAGGGCCGTAAGAGATGTCACAGCGAGATATCAGTCAACAGAACAGTGTacggatcacacacacacacacacctttcattGCCCTTTTCGTACGTAGCATCTCCAGGTTGCACCGTACAGCTGTGTAGCAGCCTGAACACAAAGCAAACTGCTGAGCCTTCGACCGTTCAGACAGTATCAAACGTCTAAATAATAACATTCATATTTCACAACATTTCATAAGTAACACTATCCCATAACATTCCTCATAGAAGCAACACCACCACCGTTCAAAAATAGTACTTACAACTGTGACCGTCAGAAAAGGAGCCATGGACCACAGCATAGAAGAATGTCATAAAATACATATCCCACGGGATTGGTCCAATACCAAAGCCATGTTTAGCTTACATTTAAATATGGCTCTGACCAATACAAGTGCCGTCATGCTGAGGGGGAGTATTGTCATTGCTTCTTTATTAAAATCAGTTAGTTTACCAGCCTTCCTCCACTGTAGGGATCTGTGAGACCTCAGCTCACTCCCCTTATCAGTATAGCGTGATACTGGATTATACAGTACAGCATTATCAATACCGCCTCAGTCCAGCAGAGGGCGTCCCACCACTCATAGACCACTAGCACAACAGTGCCTTCCCACCAGCAGCTATGTAAACATCTATATGTAAGAATGGAATGAAGTAGCCCATAGGcactgatccaaggtcagttccCAGTCTCTCCCTCCTAAGAAATAAGGTTAGAATAACAGGGttgggtaatctgatcctagatctgtggttagggcaTTCTTTGTCTCTTATGTCTGAGCCACAGGCAGGGCTAGACCAGGGCCAGGCTCGGGGTTGGTAGGAGAGGACGGTATCCCTTTAGGCCCTTTATAGAGCAGCCCTCGGGTGACTCCAGTACTGTCTCCGTTCCCGTTCAGGTTCTTATAGGGGTTCCGGCGAGGGGGCGTGCGGAAACACAGAGAAGGGAACCGGAAACCCACCAGACAGCAACCGGGACACGAGATCATCTCCTCCTGCTCCAGAGAAGGACCAGAACCATTACCGGACCCGAACAGCGATGGAGAGCCCCCACTGGGCCTACCAGGAGGTGAGTGGTTCCGGTTGGTGCCCCGCCATCCCAGAGGCCGACTAATGACCACCgtggtgctgttgttgttgtccatgtggggggaggggagggggggcaggcatAGAGGACCATTGAAGACGGGGGGAACATTACCCCAGCCGTTGTTGAATGTGGTGGAGGGTTTGGAATAAGGTGGAAGAGTAGGGAAagaagagagtggagggagagtgcCATCTAGAGTGTCAGGGGAGCTGGTGCAATCCATAGGTTCCACTTCCTGGTCAgtttcctcttcctgttcctcgcTCAGCTGGTCCAATGACAGCAGCTCTGGATCGAGAGGAAGCCCTGAGTCATCGCCCGTGAGGCCCTcgctgctcttcctcctctccacatcctcctcgtCTACGAACTCATTCGACTCAAAGGTAAATCTATCTTTCACGATTCcccgctcctctctctcgttctcaacATTCCCCTCATCATTCTCAGCGTCTAGGTCAGTTGGCAATACCCCCATTTTTTCTGTGGTATTGTCTTTGGTGGTGGGGGGCAGGAGATCTGGTGGGGGGGTGCAAGGAAGGGATAAGCAGCGTCTGTGGAGCCTTCCTCGGGGGgtacccccctctctgtctgaggGCGAGGGGGTGGTACAGGGATCCGGGGGTTTGGGTAAGGTGAACGTTAAAGAGATGACAGACTTGCTGGGCGTGTCGAACAGTTTGATCTTGCCTCCTTTTAGGTCCTCTCGCAGGGAGAAGGGGTTGACACGGGTGGGAGGCGCCAGAGTGGGGAGCACAGCCGGAGGGAGCACGTCTGATTTGCTGCGGCAGAGGCGAGGGTCGCCGGGGAGACAGAGGAAGCGCCTCCGCAGTGGGccgag

Function

NR:

description
dual specificity testis-specific protein kinase 1-like isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1992472 True 2016 lncRNA 0.52 2 42592986 42599053

Neighbor

gene id symbol gene type direction distance location
LOC110500468 LOC106608867 coding upstream 6773 42569232 ~ 42586213 (+)
trnan-guu-198 NA coding upstream 45846 42547067 ~ 42547140 (+)
trnak-cuu-149 NA coding upstream 48530 42544384 ~ 42544456 (+)
LOC110500464 NA coding upstream 110456 42473267 ~ 42482530 (+)
si:ch211-1o7.2 ankrd53 coding upstream 182157 42407650 ~ 42410829 (+)
faah2b LOC106608863 coding downstream 34340 42633393 ~ 42641281 (+)
c21h4orf48 cssa07h4orf48 coding downstream 56308 42655361 ~ 42661164 (+)
LOC110500846 nat8l coding downstream 77892 42676945 ~ 42692054 (+)
LOC110500477 LOC106608861 coding downstream 191551 42790604 ~ 42800548 (+)
LOC110500479 LOC106608859 coding downstream 222662 42821715 ~ 42834094 (+)
G1739831 NA non-coding upstream 8854 42582533 ~ 42584132 (+)
G1739788 NA non-coding upstream 84799 42507949 ~ 42508187 (+)
G1739438 NA non-coding upstream 95762 42496955 ~ 42497224 (+)
G1739434 NA non-coding upstream 101181 42491438 ~ 42491805 (+)
G1739867 NA non-coding downstream 93442 42692495 ~ 42694785 (+)
G1739909 NA non-coding downstream 130957 42730010 ~ 42730232 (+)
G1740050 NA non-coding downstream 149771 42748824 ~ 42749078 (+)
G1739440 vax2 other upstream 90629 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 237659 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 304486 42285056 ~ 42288500 (+)
G1739103 NA other upstream 695130 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1563850 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 656600 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 668161 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 790136 43389189 ~ 43390299 (+)
G1740398 NA other downstream 847997 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 870765 43469818 ~ 43470325 (+)

Expression


Co-expression Network