LOC110500468 (LOC106608867)


Basic Information

Item Value
gene id LOC110500468
gene name LOC106608867
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42569232 ~ 42586213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957872.1
CTAAATCAACATTTGAAAACAACGATGGGGAACACACTCGCTCATTGACAGTGACTTAGAGATTGATTAAGTTTTCCTGATATCAGCAGCAGACTGTTGTGATCACAAAAAAACATAATCAAGTCCGAAAATAAATGTGTCGCTATAATGTCATTATTGTGAATCGAGGCGATAAAAGTTCACATTTCGATCGGACTGATGGTCTGTAAACGGACTGTATCTCAGTTTTTTTTCAAGACAACTGCAAAAACTATTGTTTGTGCGCTACCAAGGGGATTTTTGCACTCAGGCCTTCCAAGCTAGCCCACGGCCAGGAAAGGCTTGCTAGCTACAATCCTATTTGCCTCTGCGAATTTATGAGTAACGTTCGCTAGGTTTTTACTTGTATGTGTTAAATAAGATGGACACAGACAAGTTTAACTATGTCTACAGTTGTGACTTGGACATTAATGTTCAACTGAAAATaggcagtttggaggGCAAGCGGGAGCAGAAGAGCTACAAGGCCCTGCTGCAGGATCCAATGTTGCGGTTCTCTGGCCTCTACCAGGAGAACTGCTCAGACCTCTATGTTACCTGTCAGGTGTTCGCAGAGGGCAAGCCCCTGGCGCTGCCCGTGCGCACCTCCTACAAGGCCTTCAGTACACGCTGGAACTGGAATGAGTGGCTGAAGTTGCCAGTGAAGTACCCAGACCTGCCCCAGAGTGCCCAGGTGGCCCTTACTGTGTGGGATGTGTACGGACCGGGCCGAGCCACCCCTGTGGGGGGAACCACCGTCACCCTCTTCGGCAAATATGGgaTGTTCCGGCAGGGCATGCACGACCTGAAGGTGTGGCCGGGGGTGGAGGGGGACGGAGGGGAGCCCACCAGCACCCCAGGGAGGACCAGCAGCAGTCTGGCAGAGGACCAGATGGGGCGACTGGCCAAGGCCCCTGACCTGGAGTTTCTCAGTGATcTGACCAAGGCCCACCGGCAGGGTCACATGGTGAAGGTAGACTGGTTGGACCGCCTGACCTTCAGAGAGATAGAAATGATCAACGAGAGTGAGAAGCGTAGCTCCAACTTCATGTATCTTATGGTGGAGTTTCCTCGTGTCAAAACTGGAGAAAAGCCTGAGTACAGTATTGTCTATTATGAGAAGgatggagatgACGCCTCACCGGTGCTCACCAGCGCTGACATCGTTAAAGTCCCTGACCCTCAGATGTGCAtgGAGAACCTTGTGGAGAGCAAGCACCATAAATTGGCCCGTAGCCTTCGGAGTGGCCCGTCGGACCACGACCTGAAGCCTAACGCTGCCACACGAGATCAGCTCAACgtcATAGTGAATTACCCTCCGACCAAGCAACTGAGCTCAGAGGAACAGGACCTGGTGTGGAAGTTCCGTTACTACCTCACCACTCAGGAGAAGgcACTGACTAAGTTCCTAAAGTGTGTGAACTGGGCGCTGCCCGGGGAGGCTAAGCAGGCCCTGGAGCTGCTGGGGAAGTGGAGGCCCATGGATGTTGAGGACTCCCTAGAGCTGCTCTCCTCCCAGTTCACCAACCCCACCGTACGACGCTACGCTGTGACCAGGCTGCAGCAGGCCGACGACGAGGACCTGCTGATGTACCTTCTCCAGCTGGTCCAGGCTCTGAAATATGAGAACTTCAACGACATCCAGTgtgggctggagccaggaggcaaGCGGGACAGCCAGGGCCTGGCAGAGAGCTCCACCCTGGGGGACCTAGACAGTTCCCAGATCTTGACTGCTCCAGCAGTGCCCTCACCTGTCCCGAATGGAAAGGAAGGGGCGGACAGTGAGAATCCCGAGGACCTGTGTACCTTTCTCATTTCCCGTGCCTGTAAGAACTCAACACTGGCCAACTACCTCTACTGGTATGTAATAGTGGAGTGTGAGGACCAGGACACCCAGCAGAGAGACCTAAAAACGCACAAGATGTACCTCAACGTCATTGGGAGGTTTAGCCAAGCGCTGCTCAAGggtgaTAAGAGTGTGAGGGTGATGCGGTCTCTCCTGGCATCCCAACAGACGTTTGTGGACAGACTGGTGCAGCTGATGAAGGCCGTGCAGAGAGAGAGCGGCAACCGCAAGAAGAAGACGGAGCGACTGCAGGCTCTGCTGGCGGACAATGAGAAGGTGAACCTGTGTGAGATTGACCCCATCCCGCTACCTCTGGAACCCTCGGTCAGAATCCGAGGCATCGTACCAGACACCGCCACGCTATTCAAGAGCGCCCTGATGCCAGCCAAGCTGATCTTCAAGGCGGAGGACGGGGCGATGTACCCGGTCATCTTTAAACACGGAGACGACCTGAGACAAGACCAGCTCATTCTACAGATCATCTCTCTCATGGACAAGTTGCTCAGGAAAGAGAACCTGGACCTGAAGTTGACACCTTACAAAGTGCTGGCTACAAGCACCAAGCATGGGTTCATGCAGTTTGTTCAGTCAGTGCCTGTGGCTGAGGTCCTGGCCACTGAAGGAAACATCCAGAGTTTCTTCAGAAAACACGCCCCCAGTGAAAAGGGGCCCTATGGCATCAGCCCTGAGGTGATGGACACCTACGTCAAGAGCTGTGCTGGTTACTGTGTCATCACATACAtcctgggtgtaggagacagaCACTTGGACAACCTGCTCCTCACAAAGACTGGAAAGTTGTTCCACATAGACTTTGGCTACATCCTGGGTCGTGACCCCAAGCCCCTGCCTCCTCCTATGAAGCTGAGTAAGGAGATGGTGGAGGGGATGGGCGGCATGCAGAGTGAACAGTACCAGGAGTTCAGGAAACAGTGTTACACTGCCTTCCTACACCTCAGGAGGTACTCTAACCTCATCCTAAATCTGTTCTCTCTCATGGTGGATGCCAACATTCCCGACATTGCCCTGGAGCCTGACAAGACTGTTAAGAAGgTGCAGGACAAGTTCCGATTGGACCTGTCGGACGAGGAGGCGGTGCATTACATGCAGAGTCTGATTGACGAGAGTGTGGGAGCTCTGTTTGCTGCTGTGGTGGAGCAGATACACAAGTTTGCCCAGtACTGGCGCAGATGAGAAGGACCATCTGAACAAtggatgaacagacagacaggaggggtTGTATCCATAGTGACACTCCCCCTCccttgtgtgagattgagaggaTCCATCCAGGACACTGCTGAATAGAGGCCAACCTCTActgcaaaaacaaaacaatgactGATGTTTTCAttttgtatatattatatatagatATAAAACTAATGGCCAAATAAAAACCATGTTGATACAGTGCAA
>XM_021577851.2
TAAATCAACATTTGAAAACAACGATGGGGAACACACTCGCTCATTGACAGTGACTTAGAGATTGATTAAGTTTTCCTGATATCAGCAGCAGACTGTTGTGATCACAAAAAAACATAATCAAGTCCGAAAATAAATGTGTCGCTATAATGTCATTATTGTGAATCGAGGCGATAAAAGTTCACATTTCGATCGGACTGATGGTCTGTAAACGGACTGTATCTCAGTTTTTTTTCAAGACAACTGCAAAAACTATTGTTTGTGCGCTACCAAGGGGATTTTTGCACTCAGGCCTTCCAAGCTAGCCCACGGCCAGGAAAGGCTTGCTAGCTACAATCCTATTTGCCTCTGCGAATTTATGAGTAACGTTCGCTAGGTTTTTACTTGTATGTGTTAAATAAGATGGACACAGACAAGTTTAACTATGTCTACAGTTGTGACTTGGACATTAATGTTCAACTGAAAATaggcagtttggaggGCAAGCGGGAGCAGAAGAGCTACAAGGCCCTGCTGCAGGATCCAATGTTGCGGTTCTCTGGCCTCTACCAGGAGAACTGCTCAGACCTCTATGTTACCTGTCAGGTGTTCGCAGAGGGCAAGCCCCTGGCGCTGCCCGTGCGCACCTCCTACAAGGCCTTCAGTACACGCTGGAACTGGAATGAGTGGCTGAAGTTGCCAGTGAAGTACCCAGACCTGCCCCAGAGTGCCCAGGTGGCCCTTACTGTGTGGGATGTGTACGGACCGGGCCGAGCCACCCCTGTGGGGGGAACCACCGTCACCCTCTTCGGCAAATATGGgaTGTTCCGGCAGGGCATGCACGACCTGAAGGTGTGGCCGGGGGTGGAGGGGGACGGAGGGGAGCCCACCAGCACCCCAGGGAGGACCAGCAGCAGTCTGGCAGAGGACCAGATGGGGCGACTGGCCAAGGCCCCTGACCTGGAGTTTCTCAGTGATcTGACCAAGGCCCACCGGCAGGGTCACATGGTGAAGGTAGACTGGTTGGACCGCCTGACCTTCAGAGAGATAGAAATGATCAACGAGAGTGAGAAGCGTAGCTCCAACTTCATGTATCTTATGGTGGAGTTTCCTCGTGTCAAAACTGGAGAAAAGCCTGAGTACAGTATTGTCTATTATGAGAAGgatggagatgACGCCTCACCGGTGCTCACCAGCGCTGACATCGTTAAAGTCCCTGACCCTCAGATGTGCAtgGAGAACCTTGTGGAGAGCAAGCACCATAAATTGGCCCGTAGCCTTCGGAGTGGCCCGTCGGACCACGACCTGAAGCCTAACGCTGCCACACGAGATCAGCTCAACgtcATAGTGAATTACCCTCCGACCAAGCAACTGAGCTCAGAGGAACAGGACCTGGTGTGGAAGTTCCGTTACTACCTCACCACTCAGGAGAAGgcACTGACTAAGTTCCTAAAGTGTGTGAACTGGGCGCTGCCCGGGGAGGCTAAGCAGGCCCTGGAGCTGCTGGGGAAGTGGAGGCCCATGGATGTTGAGGACTCCCTAGAGCTGCTCTCCTCCCAGTTCACCAACCCCACCGTACGACGCTACGCTGTGACCAGGCTGCAGCAGGCCGACGACGAGGACCTGCTGATGTACCTTCTCCAGCTGGTCCAGGCTCTGAAATATGAGAACTTCAACGACATCCAGTgtgggctggagccaggaggcaaGCGGGACAGCCAGGGCCTGGCAGAGAGCTCCACCCTGGGGGACCTAGACAGTTCCCAGATCTTGACTGCTCCAGCAGTGCCCTCACCTGTCCCGAATGGAAAGGAAGGGGCGGACAGTGAGAATCCCGAGCAGGACCTGTGTACCTTTCTCATTTCCCGTGCCTGTAAGAACTCAACACTGGCCAACTACCTCTACTGGTATGTAATAGTGGAGTGTGAGGACCAGGACACCCAGCAGAGAGACCTAAAAACGCACAAGATGTACCTCAACGTCATTGGGAGGTTTAGCCAAGCGCTGCTCAAGggtgaTAAGAGTGTGAGGGTGATGCGGTCTCTCCTGGCATCCCAACAGACGTTTGTGGACAGACTGGTGCAGCTGATGAAGGCCGTGCAGAGAGAGAGCGGCAACCGCAAGAAGAAGACGGAGCGACTGCAGGCTCTGCTGGCGGACAATGAGAAGGTGAACCTGTGTGAGATTGACCCCATCCCGCTACCTCTGGAACCCTCGGTCAGAATCCGAGGCATCGTACCAGACACCGCCACGCTATTCAAGAGCGCCCTGATGCCAGCCAAGCTGATCTTCAAGGCGGAGGACGGGGCGATGTACCCGGTCATCTTTAAACACGGAGACGACCTGAGACAAGACCAGCTCATTCTACAGATCATCTCTCTCATGGACAAGTTGCTCAGGAAAGAGAACCTGGACCTGAAGTTGACACCTTACAAAGTGCTGGCTACAAGCACCAAGCATGGGTTCATGCAGTTTGTTCAGTCAGTGCCTGTGGCTGAGGTCCTGGCCACTGAAGGAAACATCCAGAGTTTCTTCAGAAAACACGCCCCCAGTGAAAAGGGGCCCTATGGCATCAGCCCTGAGGTGATGGACACCTACGTCAAGAGCTGTGCTGGTTACTGTGTCATCACATACAtcctgggtgtaggagacagaCACTTGGACAACCTGCTCCTCACAAAGACTGGAAAGTTGTTCCACATAGACTTTGGCTACATCCTGGGTCGTGACCCCAAGCCCCTGCCTCCTCCTATGAAGCTGAGTAAGGAGATGGTGGAGGGGATGGGCGGCATGCAGAGTGAACAGTACCAGGAGTTCAGGAAACAGTGTTACACTGCCTTCCTACACCTCAGGAGGTACTCTAACCTCATCCTAAATCTGTTCTCTCTCATGGTGGATGCCAACATTCCCGACATTGCCCTGGAGCCTGACAAGACTGTTAAGAAGgTGCAGGACAAGTTCCGATTGGACCTGTCGGACGAGGAGGCGGTGCATTACATGCAGAGTCTGATTGACGAGAGTGTGGGAGCTCTGTTTGCTGCTGTGGTGGAGCAGATACACAAGTTTGCCCAGtACTGGCGCAGATGAGAAGGACCATCTGAACAAtggatgaacagacagacaggaggggtTGTATCCATAGTGACACTCCCCCTCccttgtgtgagattgagaggaTCCATCCAGGACACTGCTGAATAGAGGCCAACCTCTActgcaaaaacaaaacaatgactGATGTTTTCAttttgtatatattatatatagatATAAAACTAATGGCCAAATAAAAACCATGTTGATACAGTGCAA
>XM_021577852.2
TAAATCAACATTTGAAAACAACGATGGGGAACACACTCGCTCATTGACAGTGACTTAGAGATTGATTAAGTTTTCCTGATATCAGCAGCAGACTGTTGTGATCACAAAAAAACATAATCAAGTCCGAAAATAAATGTGTCGCTATAATGTCATTATTGTGAATCGAGGCGATAAAAGTTCACATTTCGATCGGACTGATGGTCTGTAAACGGACTGTATCTCAGTTTTTTTTCAAGACAACTGCAAAAACTATTGTTTGTGCGCTACCAAGGGGATTTTTGCACTCAGGCCTTCCAAGCTAGCCCACGGCCAGGAAAGGCTTGCTAGCTACAATCCTATTTGCCTCTGCGAATTTATGAGTAACGTTCGCTAGGTTTTTACTTGTATGTGTTAAATAAGATGGACACAGACAAGTTTAACTATGTCTACAGTTGTGACTTGGACATTAATGTTCAACTGAAAATaggcagtttggaggGCAAGCGGGAGCAGAAGAGCTACAAGGCCCTGCTGCAGGATCCAATGTTGCGGTTCTCTGGCCTCTACCAGGAGAACTGCTCAGACCTCTATGTTACCTGTCAGGTGTTCGCAGAGGGCAAGCCCCTGGCGCTGCCCGTGCGCACCTCCTACAAGGCCTTCAGTACACGCTGGAACTGGAATGAGTGGCTGAAGTTGCCAGTGAAGTACCCAGACCTGCCCCAGAGTGCCCAGGTGGCCCTTACTGTGTGGGATGTGTACGGACCGGGCCGAGCCACCCCTGTGGGGGGAACCACCGTCACCCTCTTCGGCAAATATGGgaTGTTCCGGCAGGGCATGCACGACCTGAAGGTGTGGCCGGGGGTGGAGGGGGACGGAGGGGAGCCCACCAGCACCCCAGGGAGGACCAGCAGCAGTCTGGCAGAGGACCAGATGGGGCGACTGGCCAAGcTGACCAAGGCCCACCGGCAGGGTCACATGGTGAAGGTAGACTGGTTGGACCGCCTGACCTTCAGAGAGATAGAAATGATCAACGAGAGTGAGAAGCGTAGCTCCAACTTCATGTATCTTATGGTGGAGTTTCCTCGTGTCAAAACTGGAGAAAAGCCTGAGTACAGTATTGTCTATTATGAGAAGgatggagatgACGCCTCACCGGTGCTCACCAGCGCTGACATCGTTAAAGTCCCTGACCCTCAGATGTGCAtgGAGAACCTTGTGGAGAGCAAGCACCATAAATTGGCCCGTAGCCTTCGGAGTGGCCCGTCGGACCACGACCTGAAGCCTAACGCTGCCACACGAGATCAGCTCAACgtcATAGTGAATTACCCTCCGACCAAGCAACTGAGCTCAGAGGAACAGGACCTGGTGTGGAAGTTCCGTTACTACCTCACCACTCAGGAGAAGgcACTGACTAAGTTCCTAAAGTGTGTGAACTGGGCGCTGCCCGGGGAGGCTAAGCAGGCCCTGGAGCTGCTGGGGAAGTGGAGGCCCATGGATGTTGAGGACTCCCTAGAGCTGCTCTCCTCCCAGTTCACCAACCCCACCGTACGACGCTACGCTGTGACCAGGCTGCAGCAGGCCGACGACGAGGACCTGCTGATGTACCTTCTCCAGCTGGTCCAGGCTCTGAAATATGAGAACTTCAACGACATCCAGTgtgggctggagccaggaggcaaGCGGGACAGCCAGGGCCTGGCAGAGAGCTCCACCCTGGGGGACCTAGACAGTTCCCAGATCTTGACTGCTCCAGCAGTGCCCTCACCTGTCCCGAATGGAAAGGAAGGGGCGGACAGTGAGAATCCCGAGCAGGACCTGTGTACCTTTCTCATTTCCCGTGCCTGTAAGAACTCAACACTGGCCAACTACCTCTACTGGTATGTAATAGTGGAGTGTGAGGACCAGGACACCCAGCAGAGAGACCTAAAAACGCACAAGATGTACCTCAACGTCATTGGGAGGTTTAGCCAAGCGCTGCTCAAGggtgaTAAGAGTGTGAGGGTGATGCGGTCTCTCCTGGCATCCCAACAGACGTTTGTGGACAGACTGGTGCAGCTGATGAAGGCCGTGCAGAGAGAGAGCGGCAACCGCAAGAAGAAGACGGAGCGACTGCAGGCTCTGCTGGCGGACAATGAGAAGGTGAACCTGTGTGAGATTGACCCCATCCCGCTACCTCTGGAACCCTCGGTCAGAATCCGAGGCATCGTACCAGACACCGCCACGCTATTCAAGAGCGCCCTGATGCCAGCCAAGCTGATCTTCAAGGCGGAGGACGGGGCGATGTACCCGGTCATCTTTAAACACGGAGACGACCTGAGACAAGACCAGCTCATTCTACAGATCATCTCTCTCATGGACAAGTTGCTCAGGAAAGAGAACCTGGACCTGAAGTTGACACCTTACAAAGTGCTGGCTACAAGCACCAAGCATGGGTTCATGCAGTTTGTTCAGTCAGTGCCTGTGGCTGAGGTCCTGGCCACTGAAGGAAACATCCAGAGTTTCTTCAGAAAACACGCCCCCAGTGAAAAGGGGCCCTATGGCATCAGCCCTGAGGTGATGGACACCTACGTCAAGAGCTGTGCTGGTTACTGTGTCATCACATACAtcctgggtgtaggagacagaCACTTGGACAACCTGCTCCTCACAAAGACTGGAAAGTTGTTCCACATAGACTTTGGCTACATCCTGGGTCGTGACCCCAAGCCCCTGCCTCCTCCTATGAAGCTGAGTAAGGAGATGGTGGAGGGGATGGGCGGCATGCAGAGTGAACAGTACCAGGAGTTCAGGAAACAGTGTTACACTGCCTTCCTACACCTCAGGAGGTACTCTAACCTCATCCTAAATCTGTTCTCTCTCATGGTGGATGCCAACATTCCCGACATTGCCCTGGAGCCTGACAAGACTGTTAAGAAGgTGCAGGACAAGTTCCGATTGGACCTGTCGGACGAGGAGGCGGTGCATTACATGCAGAGTCTGATTGACGAGAGTGTGGGAGCTCTGTTTGCTGCTGTGGTGGAGCAGATACACAAGTTTGCCCAGtACTGGCGCAGATGAGAAGGACCATCTGAACAAtggatgaacagacagacaggaggggtTGTATCCATAGTGACACTCCCCCTCccttgtgtgagattgagaggaTCCATCCAGGACACTGCTGAATAGAGGCCAACCTCTActgcaaaaacaaaacaatgactGATGTTTTCAttttgtatatattatatatagatATAAAACTAATGGCCAAATAAAAACCATGTTGATACAGTGCAA

Function

NR:

description
phosphatidylinositol 3-kinase catalytic subunit type 3 isoform X2

GO: NA

KEGG:

id description
K00914 PIK3C3, VPS34; phosphatidylinositol 3-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957872.1 False 3286 mRNA 0.52 26 42569232 42586213
XM_021577851.2 False 3288 mRNA 0.52 26 42569233 42586213
XM_021577852.2 True 3261 mRNA 0.52 25 42569233 42586213

Neighbor

gene id symbol gene type direction distance location
trnan-guu-198 NA coding upstream 22092 42547067 ~ 42547140 (+)
trnak-cuu-149 NA coding upstream 24776 42544384 ~ 42544456 (+)
LOC110500464 NA coding upstream 86702 42473267 ~ 42482530 (+)
si:ch211-1o7.2 ankrd53 coding upstream 158403 42407650 ~ 42410829 (+)
si:dkey-185m8.2 LOC106608874 coding upstream 198993 42354556 ~ 42370239 (+)
faah2b LOC106608863 coding downstream 47180 42633393 ~ 42641281 (+)
c21h4orf48 cssa07h4orf48 coding downstream 69148 42655361 ~ 42661164 (+)
LOC110500846 nat8l coding downstream 90732 42676945 ~ 42692054 (+)
LOC110500477 LOC106608861 coding downstream 204391 42790604 ~ 42800548 (+)
LOC110500479 LOC106608859 coding downstream 235502 42821715 ~ 42834094 (+)
G1739788 NA non-coding upstream 61045 42507949 ~ 42508187 (+)
G1739438 NA non-coding upstream 72008 42496955 ~ 42497224 (+)
G1739434 NA non-coding upstream 77427 42491438 ~ 42491805 (+)
G1739836 NA non-coding downstream 6773 42592986 ~ 42599053 (+)
G1739867 NA non-coding downstream 106282 42692495 ~ 42694785 (+)
G1739909 NA non-coding downstream 143797 42730010 ~ 42730232 (+)
G1739440 vax2 other upstream 66875 42501349 ~ 42502357 (+)
cxcl8c cxcl8c other upstream 280732 42285056 ~ 42288500 (+)
G1739103 NA other upstream 671376 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1540096 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 669440 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 681001 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 802976 43389189 ~ 43390299 (+)
G1740398 NA other downstream 860837 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 883605 43469818 ~ 43470325 (+)

Expression


Co-expression Network