G1739103


Basic Information

Item Value
gene id G1739103
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41888811 ~ 41897856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1991654
ttttttatttattccaAGGTGTGACTTTAACTTTGAAGGATTGTGTGGAAGCAAGCTCTTGTAGCGGGTGATAGAATAGAGGGGAAACAGGAGGAAGGGATAATAGAGAAGACAGAAGAGAAAGAATCCACGCAAAGGGGAGTTACTGGTTCTGTCGctgtcctaaatgacaccctgttccctccGTAGTGCACTTGGCGACTTCGGATCAAGTCAAAAACTAGTGCACgacatagggaattgggtgcagATTTGAGGATTGCCCACTGTCATTAGAATACCCTTGCTCACTTCATGGCTGACATTCTCAGGTTCTGTTTTAAACATGTCATGTTCCTGGCCAATTACATTGCAAATGGTTGAGTGCCACCTCATCAACTGTACAGTCAGGCATCAGATTGCTATACCATATGATGCGGTTAGCTGATATGGTTAACACGTATCCAGGCGTTGTGAGATCTGGCAGCAGTCTGCGGTGTGGTCAGCCTGGAACGCAGCCATCCTCTTATTGAACTGGACCATAACCTAAAAGCTTCCTTGCATAGATAGTTAGGctttcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaactaaaatttgatttgatttgatttgaggctaCACcgagtccaaaatggcaccctataacctatgtcgtgcactacttttgactagagcctatggggaataggctgccattttggATGAAGCCTGGGCCTAGCTTTGTTTCACCATACCTGGACACAGGGTTCCTGAGTCCATATTCCTTTATCTCCAGAACATTACCTgatttccttctctctcgctctttttcaCTACTCAacacctctacctgtctctcgCTCCTCTCAAAATGCACAGCAAGCAGACAACCTCAATATGGTTTCATTGGACATGATATGAAATAGTATATGTaaaatattacatattatatcATTCTATTGGTGTAGTCATATACCTGGTACAGATGATGGAGTGATGATCGAGGGatgagacggaggagagaggtgacCGACACGCTTCATTCTGGCCATAACAGTTATTATACTCCTTTATCTTTGTATCCTCCAATCAAAATGAGCCTTCCTGTCAGCATCCTCACCCTATCCTCCAATCAAAAAGAATTCTTCCTGTCAGTGTCCTCACCCCTCTAAACAAGTTGATCAGAGATCAGGGGTTAACTACCTTTTACCCACAATTCACTGCTCTCTTCTGATGGCACCCTATACTCTCTGAAATACCACATTACAACATTATGAAAGCATTGGGACAACATTACACGTTTCTGTGGAAAGAGAGGGGTGTTTGCATGGGGACGGGGAGCTGCTATAACGGATTTGTGTGTTGGGGGGGAGATTCAACCATTCAACATGGACAGCATTTCTACTATAAACAGAGCATGCATCTGCATcaatacacaaccaaccaaccaaccaaccagtatTTCATTGTTTTCTTTTAAACCCTTCCAAATAATAGGAATTGTAATATTATTTGAGGAGGCGAGGTATAGGGCTGGGGAGTGTGGaaggggaaaagaggagaggggaagggaaggggcaactaaacctctctctgtacaggagggagaggatggagggaagaaagagcaggaggagaaggaggagtttTACACGTCGCTCTctccatagaggagagggggaaaatgAAGGGAAGACgagaggagggggaaagggggTTTACAAGTCGCTCTCTCCATACAGGAGAGGGGGTTTACAAGTCGCTCTCTCCATAGAGTGCGCTGGAGAAAGAGATGTAGTCGAGGGCTCCGGCTGGGCCGTCGGCTCCAATGTACCTGGTCACAGAGATACATTATATTACCAGAGAGGTCTAATGTACCTGGTCACAGAGATACATTATATTACTAGAGAGGTCTTATGTACCTGGTCACAGAGATACATTATATTACTAGTGAGGTCTAATGTACCTGGTAATAGAGATACATTATATTACTAAAGTGGCCTGTGTCATAGCCACACACTTGTATAGGTTACACAGTTGTACATGTGTGACACAGGACAAATACAAGCACCCCCTTTTTGACCTTTGTAATTCTGTGTACCTGGTCATGCGGCTGATGCAGTACTCAGCCTGCTCTGCGGGCAGCTCTCTGCGCAGCTCATCAACCGTGATGTAGGcCTTGTCGGAGGCCAGGATCTTAAAGGAAGCCATGACCTGGTCAGCGGTGTCTGTCTCGGCCGTCTCACGGGTCATGAAGTCGATGAAGGCCTGGAAGGTGACCACGCCTGTGTTGTTTGAATCCACCAAGGTCATGATGCGGGCAAACTCCACCTCACCCTATTGGACAACATGTTACAGTAAATTAGAACACCTCACCCTATTGGACAATATGTTACAATAGATTAGAACATCTCACCCTATTGGACAACACGTTAG
>TU1991652
ACTCACCGCCTCCCACTTGTTAGTGATGTCCTGGGGGGAGAGGTTGGTGTAGGGGTTGACTCCTGACAGCTTGATGCCGTAAGTCTGAGCGATCTTCACAATCTCGCTCTGGATGCCCATGGTGGCCATGCGTTCCTTATCAGCCTCTGGTAGTGTGGCCTTGAACTGGTCATGGGCTGTAATcagagactggagaggagaggaggagtgagaatgGAGTGATACAGTGGGaaggagcgatagagagagagatagagaggatcaAAGGGTGTGGTGTGTGTCACATAACGAGAAGGGGGGGGGAATAAGGAGTGAGAATGGAGTGATATGGGAaataacgagagagagcgagggaatgCAAAGAGAAACGGGAGGCCATCCGACCGTTAATGTTACGTattgtacacacatacacacacacacacgcgctcacacacacacacgtacatggaTCTCCTCGGTGCTGTGGACGATAAACATGTCCTGCAGATCCTCCATGGCTCCGTCCATCCAGTTGTTGAAGGGCGCCGCCCTCTTGGCGAACTCCAGGTACAGCTGGTCAATGGTCTCCCACAGTTTCTCCACGCGCTAGGAAAGACCAGGACAAGATGTAACATCCATATACAGTATGAAACCATCCCTGCTTAAGTAGTCACAGTAGCACATGTAATGGCTTGATATGACCACCACTAGTTGTTATTGGAAGGGACAGGGAACATCTCCTGGCTCgtggtggctcagttggtaagaggCTGTGTGCTCAGTTCCTGCAGGGATCACATTCTTCAACCAAAAGCGTCTGCTTAAGTGGCGTATACAATATGATTATATTACGGTATCTGTTGTACGTGTGTGGTTCAGTACCTCCAGGGAGTCCCTCCTCTTCTGCGTCAGCGTACCCAGGTTGTCCCACTGGTCACAGATGCCCTGGCAGCGGGCGTTCACAGAGGACGCGTCATGGTAGTCCAGCTCATGAGCTCCTGGGCGATAGCGGCGATCTGCTCCACTCGGTCCTGGTGAGCGGCCAGGTCAGACTCAAAGGCCTCGTGTTTCCTCATCAGAGCCCTGATCTCCATCAGAGAGGCCGACTCATAGTCCTTCATGGACAGCAGCTCTTCTACCTGAGGTCCAGGACTGGTGCAGGGAACACTTCTGCTTGAACTTCTCAGCCAGGTGGTCCAGTCTCTCCAGACGTCTGATCTCAGTAAGAAGCCACTCCTCGTATCCCTTCTCCACCTGCTCCAGACCCTTCCATGCATTGGCTATGTCCTGGGGTTGGAGAGAGACCAAGATGGGGTATAACATGGGTAGTATTATAGATGGATGTCAATTAGTTGGTTGACTATACTGGGTCTTGTAATGTTGGTGGAACAGTCAGATATCCAGGGGGTTCTTCTCAAAACTCTTTTGAACCACACCACAGTAAATTAGCTGTGGTTTTTAATGAAGAACCCGGGGTATGAAGTCGAGAGGGCTGCCAGGACAGTGTCACTCCCTGAGACGGGGTGTGTGTGACGTCACCTACCGAGACCATCTTTCCCTCAGAGGGCATGAAGGCGGGCCGGTTGCTCAGCCTCAGCTTGGTCTGCAGGGTGTTGAAGTTGATCTCCAGCTGACACTTCTCCTGGACGCGGGGAGGCTTGTGGATGCGGCGGTAGTCCCTGAAGTCCTCCAGCTTCTGCTGCATGGCCTTCATCTGCTGCTCCGCCATGCGGTTCTCCAGCCACGGGATGGTCTTGCGGATCCACTCTAGCAACTA

Function

NR:

description
alpha-actinin-3-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1991654 False 2441 TUCP 0.45 2 41888811 41891367
TU1991652 True 1759 TUCP 0.53 3 41895329 41897856

Neighbor

gene id symbol gene type direction distance location
trnan-guu-197 NA coding upstream 8977 41879761 ~ 41879834 (+)
trnan-guu-196 NA coding upstream 11667 41877071 ~ 41877144 (+)
trnan-guu-195 NA coding upstream 12834 41875904 ~ 41875977 (+)
trnan-guu-194 NA coding upstream 17063 41871675 ~ 41871748 (+)
trnan-guu-193 NA coding upstream 18224 41870514 ~ 41870587 (+)
LOC110500845 LOC106608891 coding downstream 44765 41942621 ~ 41975186 (+)
LOC110500448 LOC106608889 coding downstream 108459 42006315 ~ 42052638 (+)
trnas-gcu-263 NA coding downstream 190813 42088669 ~ 42088750 (+)
trnas-gcu-264 NA coding downstream 192784 42090640 ~ 42090721 (+)
LOC110500450 clcn3 coding downstream 221416 42119272 ~ 42185004 (+)
G1739078 NA non-coding upstream 89659 41798923 ~ 41799152 (+)
G1739070 NA non-coding upstream 101263 41778827 ~ 41787548 (+)
G1738925 LOC100380853 non-coding upstream 118964 41769501 ~ 41769847 (+)
G1738924 NA non-coding upstream 119740 41768783 ~ 41769071 (+)
G1738893 NA non-coding upstream 166803 41721680 ~ 41722008 (+)
G1739115 NA non-coding downstream 22743 41920599 ~ 41926648 (+)
G1739131 NA non-coding downstream 37577 41935433 ~ 41937376 (+)
G1739093 NA non-coding downstream 215460 42113316 ~ 42120480 (+)
G1739245 NA non-coding downstream 224534 42122390 ~ 42123986 (+)
G1739084 NA non-coding downstream 244497 42142353 ~ 42143265 (+)
G1738119 NA other upstream 859675 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 891491 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1334958 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1485126 40401452 ~ 40404840 (+)
G1737353 NA other upstream 1825486 40062706 ~ 40063325 (+)
cxcl8c cxcl8c other downstream 387200 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 456721 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 603493 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1357797 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 1369358 43267057 ~ 43268143 (+)

Expression


Co-expression Network