G1738925 (LOC100380853)


Basic Information

Item Value
gene id G1738925
gene name LOC100380853
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41769501 ~ 41769847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1991454
cccagtgtccagctgggcatctgtacgttccgtctgctgtctgcAACCGTTtaatctattgggcccacacggcctcttgcctggtggcaccggtatAATCGGCCGGACGGTGCGTTGCCTTTGTgagaaatactggtggcccaccttggccaaggacgtgagggtttatgtttcttcctgctcggtgtgcgcccagtgcaatgctcccaggcacctgcccagagggaagttagAACCCGTCCCCAATCCACAAAGGCTGTGGTCGCACCTTTCGGTGGACATCCTCAaggatcttcctccctcacagggaaacaccacgatcctggtcgttgtggatcggttttcta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1991454 True 347 lncRNA 0.57 1 41769501 41769847

Neighbor

gene id symbol gene type direction distance location
LOC110500937 LOC106609011 coding upstream 14449 41749525 ~ 41755052 (+)
LOC110500441 LOC106609015 coding upstream 75680 41688445 ~ 41693821 (+)
LOC110500440 LOC106609014 coding upstream 81124 41676246 ~ 41688377 (+)
LOC110500439 LOC106609016 coding upstream 97199 41643007 ~ 41672302 (+)
LOC110500443 LOC106608913 coding upstream 153754 41609250 ~ 41615747 (+)
trnan-guu-128 NA coding downstream 9020 41778867 ~ 41778940 (+)
trnan-guu-129 NA coding downstream 11361 41781208 ~ 41781281 (+)
trnan-guu-130 NA coding downstream 12534 41782381 ~ 41782454 (+)
trnan-guu-131 NA coding downstream 13706 41783553 ~ 41783626 (+)
trnan-guu-132 NA coding downstream 14880 41784727 ~ 41784800 (+)
G1738924 NA non-coding upstream 430 41768783 ~ 41769071 (+)
G1738893 NA non-coding upstream 47493 41721680 ~ 41722008 (+)
G1738892 NA non-coding upstream 48864 41720403 ~ 41720637 (+)
G1738831 NA non-coding upstream 228359 41540893 ~ 41541142 (+)
G1738829 NA non-coding upstream 230807 41538492 ~ 41538694 (+)
G1739070 NA non-coding downstream 8980 41778827 ~ 41787548 (+)
G1739078 NA non-coding downstream 29076 41798923 ~ 41799152 (+)
G1739115 NA non-coding downstream 150752 41920599 ~ 41926648 (+)
G1739131 NA non-coding downstream 165586 41935433 ~ 41937376 (+)
G1739093 NA non-coding downstream 343469 42113316 ~ 42120480 (+)
G1738119 NA other upstream 740365 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 772181 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1215648 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1365816 40401452 ~ 40404840 (+)
G1737353 NA other upstream 1706176 40062706 ~ 40063325 (+)
G1739103 NA other downstream 118964 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 515209 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 584730 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 731502 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1485806 43255653 ~ 43327738 (+)

Expression


Co-expression Network