LOC110500440 (LOC106609014)


Basic Information

Item Value
gene id LOC110500440
gene name LOC106609014
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41676246 ~ 41688377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957856.1
AGGCCTGCATCTGTTAGGTTTGTTAAATTCGGGGAGCATCTACGGGTCAGAGTTAGCTTTGTATGAAACAGACGGTTTAGGGAGGATTACGCATTTGTAGTAGATCTGTTCTGGGACAAACTGCTGTTCTGTGATCGTCCTTCGTAAAGACGTGAACGGGGCAGGATTACACCATGGTCCTGCCCTCGTCGACGAGAGAAAGTAGAGGTCTGTCCATCCCACCCCTTCTTCTCCGGCCTCCAAGATAGATTCCTTCAGGAGTAAGGTTGAGCTCCTCCGCCTGCCTCTGGCCCTCTCATCCAAGTCCATCAGCCACCGCAAGAGTCAGCTGGGCGGAGCCGGGCAGCACGGCACGGGGGGAGGAGGTGCCCACAGGGGCAAACCCCGCCCACCGGCCTCTGACATGGACAACGAGTCGCAGTACTCGGGCTACTCCTACAAGTCCTCACACTCCCGCAACTCTAGGAAGCACAGGGATAGGCGGGACAGGCACCGCTCCAAGAGCAGGGACGGCAGTAGTCGTGGAGACAAGTCGGTCACCATCCATGCCCCTGGAGAGCCTCTACTGGACACCGAGTCCACCCGCGGAGACGATCGGGATGATAACTGGGGTGAGACAACCACCGTGCAGACTGGCACGTCAGAACACAGCGTCTCCAATGAGGACCTGACGCGCGTCTCCAAGGAGCTCGAGGAGTCCTCCCCGCTGGAATGCCGGCGTTTCTTGGGCCCAGGATTGGGTGCCATCCTTGGCCTCTTCGCCCTGGTCACCCCCCTGGCTTTCCTGGCTCTTCCGCAGCTGCTGTGGCGCGAGACCCTGGAGCCCTGCGGCACGCCCTGCGAGGGTCTCTACGTCTCCCTGGCCTTTAAGCTCCTGGTCCTCCTCATCTccacctgggctctgttcctgcgCCCGCCGCGCGCTACCTTGCCTCGCTTCTACGTCTTCCGCTGCCTGCTGCTGGCGCTCGTCTTCCTGTTCGTGGCGTCCTACTGGCTGTTCTACGGCGTGCGCGTGCTGGAGCCCCGGGAGAGGGACTACAGGGGCATCGTGGGGTACGCGGCGTCGCTGGTGGACGCGCTGCTCTTCATCCAGTACCTGGCCCTGGTGTTGCTGGAGGTCAGACACCTGCAGCCTGCCTTCTGCCTCAAGGTGGTGCGCACAACTGACGGGGAAAGTCGCTTCTACAACGTGGGACATCTCAGTATTCAGAGGGCAGCAGTGTGGGTGCTGGACCGGTACTACAGTGATTTCCCAGTCTACAACCCTGCCCTCCTCAACCTGCCCAAGTCCATCCTCTCTAAGAAGAGTTCTGGCTTCAAAGTCTACACTCTGGGTGAAGAGAACAACACTAACAACTCTACGGGTCAGTCCAGAGCGATGATCGCTGCGGCCGCCCGCAGGAGAGACAACTCCCACAACGAGTATTACTACGAGGAGGCAGAGACGGACCGCAGGGTCCGCAAGCGCAAGGCCAGGCTGGTGGTGGCGGTAGAGGAAGCCTTCACCCACATCAAGCGTCTCCAGGACGACGAGCCAGCCGCGTCGTCCCCCAAACACCCCCGTGAGGTGATGGACCCCCGGGAGGCAGCTCAGGCCATCTTCGCCCCCATGGCCCGGGCCATGCAGAAGTACCTGAGGACCACGCGCCAGCAACCCTATCACAGCATGGAGAGCATTATCAACCACCTGCAGTTCTGTATCACGCACAACATGACCCCCAAGgCCTTCCTGGAGCGCTACCTTTCTCCAGGCCCCACGCTGCAGTACCAGCGGGAGAACGGTATGGGTCGCCAGTGGACCCTAGTGAGCGAGGAGCCGGTGACATCAGCCCTGAGTCGGGGTCTCGTCTTCTCCCTGCGACGTCTCGACTTCTCCCTGGTTGTCACGGTgacacccctccccttcctccacctGGGGGAGGAGTTTATCGACCCCAAGAGCCACAAGTTTGTCATGAGGCTGCAGTCGGAAACctctgtgtagagagagggagagaaagtagtggataaaggggggggggtgcgagagaggaagagggaactTATGATTCATCTTTCCTCAAAGCCCATCTCTCTGTGTTGACCTCCGTGTGAAAAAGGGAGAGAAGACGGCTATGTGTCTCTTTTTTTGCACAAAGCAGTGGAAATGTGGCGTCTGCTACCAAGGGCTGGAGGAGAGACCTCTGTGGCTATCCCGTTTTATTAACTGTGTGtgaatgtctttgtgtgtgttactgtgttagtcATTGGGACTTGTATGTTTCTCATTCCTTGACAGTAACTGGACCGCATTATTTGAAGTtgacattactacattactaacCAATGAACTGATAAAATATTAAAGATAAATGTGAATAGGAAGACttgattaaacattttttttttttttttaaagaactagAAAAGTTACGTGCTTGCAAAAGTTGCAAATTAGCTACGACGTCAACCAATCAGGTGATTGGAATCACTGAATCGACAAATAAACTGACTGCTTCCTGACAGTGGAACCATTTTCATTGGACAACATCTGACCCTGGTCCAAAGGAAGTGGGTTGTTCTAGGGACAGCTGATGAATGTTTAGTTGAAACACTGAGCAGCTGATTTTCATAAGAAATTAAACGTTTAGGATATTTTTTGTGACGTTTATTAATGGATGTTATGTTGGGGACTTTTGAGGTGTATTCCAGTGTTGGTTTTATAATGAAGAAGACGGAACAGATACAAaaaacagactgaacctattgtcgTCATGATATGAGAGGTTATTTTTGTTTTTGGTCCCAAATAAAAGTCCATATCAGATATAGGGCTGAGTCCCAATAGTATCTAATTTCTCCTGAATTGTGGACTCATTTACTACTTCCCATCAAAAGCATTGCCTTGGTGGAGGCCAGGGCTAGtgggagtttccaccatattaCTTATACCAGTCATCAAGTCAGTGAAGAAGTCATTTTTTTGTAAGAAAGAGAGACACATCCATAGTCATGTGTACAACATGACCACTGTACTGTTCTGAACATTTGACCATGCCTaaacacacaaactaacacaTTTGTTTTTATTAACCTGTACTTGCGTGCAGTTTAAGATATGATTTGTTCGATTCAAGGCTCTGAGGTGAACATCAGCAACAGTCCTTATGGGTCCAGCACAAACAACGGTTCTTGGGCTCTTTGGCAGCTTAGAGCTGCTGTCGTCTGTCTCCTATTGTTGTATATAAATGTTTTTTATCTTTTTATATGTGTACCATATGTTTGAGACAATGGTAGcttttttcccctttttttctacataagaaatgcattttatttgatattttttaGTATCACTTCATGTTGTAAATACATTTGTAGATTGCAGTTATGATGTGAATGTTTTTCATATTTCATAATTTTAGGACTAAATTGTTACGACCTTTTCAATAAATTATCTCTCATGA
>XM_036957855.1
GGTGGAGTGGAGGCGGAGCACCGTTGGGGACTTTGGCGAGTGGAGGGAGGCCATTGATTTTTAGGGTTTTAGAGTACTTTTGAACGGAGGAAAGACGAATCTGGATCTTAGTTATCCAGAAAGACTGACTGGGTAACCGTTTCCATACGCGGAAACAGAAACCAATCGGGAAACTGTGGTTGAATATTCCAAACCGCGAGGGACCGTGTAACGCAGTTTAGCCCTTTTGGAAAGGGGCGAGCAATTGTCCCAAACCCGGCGACGTGTTCTGTCGTTACAAGGGACCACAGAACAAGAGCGCAAGAAATTTGAGCTCCTAAGAACTGAAAATTTTGAATTTATATCAGCTGCCCGATAAAGCCTACACTTGGATTATCTTTATTGATTGTATTATGTGATTTAACGGGATACAAAAGCATTGCGTCTCTGTGGAGCGTTGCCTCGCGCACCCCTCTCGGTGATGAATGACTATTCACACGCGCAGCGGGGCTTCAAGCAAAGAACAGATGCAGAAACCGAGAATGGATGCGGCTCATGGCTTTTGTATAGCCTGGATGATTTTCAGTTGAATAAATTATATTGTATATGAAGAGGAATCAAGTTACAAACCTTTCCTTCCTGAATGATGTATTTGGAAAAGAAACCTAATTAGGATACATCTCCGCCGCCTGATTTGAGTCACTGTTTAGGGTTTTCTTTGTGTCGAGATTTTTAGGCTACGATTCACGTTCACCCATTTGGGTATCACATTTTGAAAAGAAAGGTCTGTCCATCCCACCCCTTCTTCTCCGGCCTCCAAGATAGATTCCTTCAGGAGTAAGGTTGAGCTCCTCCGCCTGCCTCTGGCCCTCTCATCCAAGTCCATCAGCCACCGCAAGAGTCAGCTGGGCGGAGCCGGGCAGCACGGCACGGGGGGAGGAGGTGCCCACAGGGGCAAACCCCGCCCACCGGCCTCTGACATGGACAACGAGTCGCAGTACTCGGGCTACTCCTACAAGTCCTCACACTCCCGCAACTCTAGGAAGCACAGGGATAGGCGGGACAGGCACCGCTCCAAGAGCAGGGACGGCAGTAGTCGTGGAGACAAGTCGGTCACCATCCATGCCCCTGGAGAGCCTCTACTGGACACCGAGTCCACCCGCGGAGACGATCGGGATGATAACTGGGGTGAGACAACCACCGTGCAGACTGGCACGTCAGAACACAGCGTCTCCAATGAGGACCTGACGCGCGTCTCCAAGGAGCTCGAGGAGTCCTCCCCGCTGGAATGCCGGCGTTTCTTGGGCCCAGGATTGGGTGCCATCCTTGGCCTCTTCGCCCTGGTCACCCCCCTGGCTTTCCTGGCTCTTCCGCAGCTGCTGTGGCGCGAGACCCTGGAGCCCTGCGGCACGCCCTGCGAGGGTCTCTACGTCTCCCTGGCCTTTAAGCTCCTGGTCCTCCTCATCTccacctgggctctgttcctgcgCCCGCCGCGCGCTACCTTGCCTCGCTTCTACGTCTTCCGCTGCCTGCTGCTGGCGCTCGTCTTCCTGTTCGTGGCGTCCTACTGGCTGTTCTACGGCGTGCGCGTGCTGGAGCCCCGGGAGAGGGACTACAGGGGCATCGTGGGGTACGCGGCGTCGCTGGTGGACGCGCTGCTCTTCATCCAGTACCTGGCCCTGGTGTTGCTGGAGGTCAGACACCTGCAGCCTGCCTTCTGCCTCAAGGTGGTGCGCACAACTGACGGGGAAAGTCGCTTCTACAACGTGGGACATCTCAGTATTCAGAGGGCAGCAGTGTGGGTGCTGGACCGGTACTACAGTGATTTCCCAGTCTACAACCCTGCCCTCCTCAACCTGCCCAAGTCCATCCTCTCTAAGAAGAGTTCTGGCTTCAAAGTCTACACTCTGGGTGAAGAGAACAACACTAACAACTCTACGGGTCAGTCCAGAGCGATGATCGCTGCGGCCGCCCGCAGGAGAGACAACTCCCACAACGAGTATTACTACGAGGAGGCAGAGACGGACCGCAGGGTCCGCAAGCGCAAGGCCAGGCTGGTGGTGGCGGTAGAGGAAGCCTTCACCCACATCAAGCGTCTCCAGGACGACGAGCCAGCCGCGTCGTCCCCCAAACACCCCCGTGAGGTGATGGACCCCCGGGAGGCAGCTCAGGCCATCTTCGCCCCCATGGCCCGGGCCATGCAGAAGTACCTGAGGACCACGCGCCAGCAACCCTATCACAGCATGGAGAGCATTATCAACCACCTGCAGTTCTGTATCACGCACAACATGACCCCCAAGgCCTTCCTGGAGCGCTACCTTTCTCCAGGCCCCACGCTGCAGTACCAGCGGGAGAACGGTATGGGTCGCCAGTGGACCCTAGTGAGCGAGGAGCCGGTGACATCAGCCCTGAGTCGGGGTCTCGTCTTCTCCCTGCGACGTCTCGACTTCTCCCTGGTTGTCACGGTgacacccctccccttcctccacctGGGGGAGGAGTTTATCGACCCCAAGAGCCACAAGTTTGTCATGAGGCTGCAGTCGGAAACctctgtgtagagagagggagagaaagtagtggataaaggggggggggtgcgagagaggaagagggaactTATGATTCATCTTTCCTCAAAGCCCATCTCTCTGTGTTGACCTCCGTGTGAAAAAGGGAGAGAAGACGGCTATGTGTCTCTTTTTTTGCACAAAGCAGTGGAAATGTGGCGTCTGCTACCAAGGGCTGGAGGAGAGACCTCTGTGGCTATCCCGTTTTATTAACTGTGTGtgaatgtctttgtgtgtgttactgtgttagtcATTGGGACTTGTATGTTTCTCATTCCTTGACAGTAACTGGACCGCATTATTTGAAGTtgacattactacattactaacCAATGAACTGATAAAATATTAAAGATAAATGTGAATAGGAAGACttgattaaacattttttttttttttttaaagaactagAAAAGTTACGTGCTTGCAAAAGTTGCAAATTAGCTACGACGTCAACCAATCAGGTGATTGGAATCACTGAATCGACAAATAAACTGACTGCTTCCTGACAGTGGAACCATTTTCATTGGACAACATCTGACCCTGGTCCAAAGGAAGTGGGTTGTTCTAGGGACAGCTGATGAATGTTTAGTTGAAACACTGAGCAGCTGATTTTCATAAGAAATTAAACGTTTAGGATATTTTTTGTGACGTTTATTAATGGATGTTATGTTGGGGACTTTTGAGGTGTATTCCAGTGTTGGTTTTATAATGAAGAAGACGGAACAGATACAAaaaacagactgaacctattgtcgTCATGATATGAGAGGTTATTTTTGTTTTTGGTCCCAAATAAAAGTCCATATCAGATATAGGGCTGAGTCCCAATAGTATCTAATTTCTCCTGAATTGTGGACTCATTTACTACTTCCCATCAAAAGCATTGCCTTGGTGGAGGCCAGGGCTAGtgggagtttccaccatattaCTTATACCAGTCATCAAGTCAGTGAAGAAGTCATTTTTTTGTAAGAAAGAGAGACACATCCATAGTCATGTGTACAACATGACCACTGTACTGTTCTGAACATTTGACCATGCCTaaacacacaaactaacacaTTTGTTTTTATTAACCTGTACTTGCGTGCAGTTTAAGATATGATTTGTTCGATTCAAGGCTCTGAGGTGAACATCAGCAACAGTCCTTATGGGTCCAGCACAAACAACGGTTCTTGGGCTCTTTGGCAGCTTAGAGCTGCTGTCGTCTGTCTCCTATTGTTGTATATAAATGTTTTTTATCTTTTTATATGTGTACCATATGTTTGAGACAATGGTAGcttttttcccctttttttctacataagaaatgcattttatttgatattttttaGTATCACTTCATGTTGTAAATACATTTGTAGATTGCAGTTATGATGTGAATGTTTTTCATATTTCATAATTTTAGGACTAAATTGTTACGACCTTTTCAATAAATTATCTCTCATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04510 VANGL; vang-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957856.1 False 3449 mRNA 0.51 8 41676246 41688377
XM_036957855.1 True 4005 mRNA 0.50 8 41676497 41688377

Neighbor

gene id symbol gene type direction distance location
LOC110500439 LOC106609016 coding upstream 3944 41643007 ~ 41672302 (+)
LOC110500443 LOC106608913 coding upstream 60499 41609250 ~ 41615747 (+)
LOC110500843 LOC106609004 coding upstream 74780 41584808 ~ 41601466 (+)
LOC110500434 LOC106609000 coding upstream 409879 41257323 ~ 41266367 (+)
LOC110500837 LOC106608998 coding upstream 429113 41224772 ~ 41247133 (+)
LOC110500441 LOC106609015 coding downstream 68 41688445 ~ 41693821 (+)
LOC110500937 LOC106609011 coding downstream 61148 41749525 ~ 41755052 (+)
trnan-guu-128 NA coding downstream 90490 41778867 ~ 41778940 (+)
trnan-guu-129 NA coding downstream 92831 41781208 ~ 41781281 (+)
trnan-guu-130 NA coding downstream 94004 41782381 ~ 41782454 (+)
G1738831 NA non-coding upstream 135104 41540893 ~ 41541142 (+)
G1738829 NA non-coding upstream 137552 41538492 ~ 41538694 (+)
G1738824 NA non-coding upstream 140901 41527669 ~ 41535345 (+)
G1738291 NA non-coding upstream 150427 41390347 ~ 41525819 (+)
G1738892 NA non-coding downstream 32026 41720403 ~ 41720637 (+)
G1738893 NA non-coding downstream 33303 41721680 ~ 41722008 (+)
G1738924 NA non-coding downstream 80406 41768783 ~ 41769071 (+)
G1738925 LOC100380853 non-coding downstream 81124 41769501 ~ 41769847 (+)
G1739070 NA non-coding downstream 90450 41778827 ~ 41787548 (+)
G1738119 NA other upstream 647110 41024710 ~ 41029136 (+)
G1738057 LOC100194703 other upstream 678926 40955050 ~ 40997320 (+)
G1737866 LOC103384823 other upstream 1122393 40552011 ~ 40553853 (+)
LOC110500409 LOC106599480 other upstream 1272561 40401452 ~ 40404840 (+)
G1737353 NA other upstream 1612921 40062706 ~ 40063325 (+)
G1739103 NA other downstream 200434 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 596679 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 666200 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 812972 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 1567276 43255653 ~ 43327738 (+)

Expression


Co-expression Network