RNA id: XM_036957872.1


Basic Information

Item Value
RNA id XM_036957872.1
length 3286
RNA type mRNA
GC content 0.52
exon number 26
gene id LOC110500468
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42569232 ~ 42586213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAATCAACATTTGAAAACAACGATGGGGAACACACTCGCTCATTGACAGTGACTTAGAGATTGATTAAGTTTTCCTGATATCAGCAGCAGACTGTTGTGATCACAAAAAAACATAATCAAGTCCGAAAATAAATGTGTCGCTATAATGTCATTATTGTGAATCGAGGCGATAAAAGTTCACATTTCGATCGGACTGATGGTCTGTAAACGGACTGTATCTCAGTTTTTTTTCAAGACAACTGCAAAAACTATTGTTTGTGCGCTACCAAGGGGATTTTTGCACTCAGGCCTTCCAAGCTAGCCCACGGCCAGGAAAGGCTTGCTAGCTACAATCCTATTTGCCTCTGCGAATTTATGAGTAACGTTCGCTAGGTTTTTACTTGTATGTGTTAAATAAGATGGACACAGACAAGTTTAACTATGTCTACAGTTGTGACTTGGACATTAATGTTCAACTGAAAATaggcagtttggaggGCAAGCGGGAGCAGAAGAGCTACAAGGCCCTGCTGCAGGATCCAATGTTGCGGTTCTCTGGCCTCTACCAGGAGAACTGCTCAGACCTCTATGTTACCTGTCAGGTGTTCGCAGAGGGCAAGCCCCTGGCGCTGCCCGTGCGCACCTCCTACAAGGCCTTCAGTACACGCTGGAACTGGAATGAGTGGCTGAAGTTGCCAGTGAAGTACCCAGACCTGCCCCAGAGTGCCCAGGTGGCCCTTACTGTGTGGGATGTGTACGGACCGGGCCGAGCCACCCCTGTGGGGGGAACCACCGTCACCCTCTTCGGCAAATATGGgaTGTTCCGGCAGGGCATGCACGACCTGAAGGTGTGGCCGGGGGTGGAGGGGGACGGAGGGGAGCCCACCAGCACCCCAGGGAGGACCAGCAGCAGTCTGGCAGAGGACCAGATGGGGCGACTGGCCAAGGCCCCTGACCTGGAGTTTCTCAGTGATcTGACCAAGGCCCACCGGCAGGGTCACATGGTGAAGGTAGACTGGTTGGACCGCCTGACCTTCAGAGAGATAGAAATGATCAACGAGAGTGAGAAGCGTAGCTCCAACTTCATGTATCTTATGGTGGAGTTTCCTCGTGTCAAAACTGGAGAAAAGCCTGAGTACAGTATTGTCTATTATGAGAAGgatggagatgACGCCTCACCGGTGCTCACCAGCGCTGACATCGTTAAAGTCCCTGACCCTCAGATGTGCAtgGAGAACCTTGTGGAGAGCAAGCACCATAAATTGGCCCGTAGCCTTCGGAGTGGCCCGTCGGACCACGACCTGAAGCCTAACGCTGCCACACGAGATCAGCTCAACgtcATAGTGAATTACCCTCCGACCAAGCAACTGAGCTCAGAGGAACAGGACCTGGTGTGGAAGTTCCGTTACTACCTCACCACTCAGGAGAAGgcACTGACTAAGTTCCTAAAGTGTGTGAACTGGGCGCTGCCCGGGGAGGCTAAGCAGGCCCTGGAGCTGCTGGGGAAGTGGAGGCCCATGGATGTTGAGGACTCCCTAGAGCTGCTCTCCTCCCAGTTCACCAACCCCACCGTACGACGCTACGCTGTGACCAGGCTGCAGCAGGCCGACGACGAGGACCTGCTGATGTACCTTCTCCAGCTGGTCCAGGCTCTGAAATATGAGAACTTCAACGACATCCAGTgtgggctggagccaggaggcaaGCGGGACAGCCAGGGCCTGGCAGAGAGCTCCACCCTGGGGGACCTAGACAGTTCCCAGATCTTGACTGCTCCAGCAGTGCCCTCACCTGTCCCGAATGGAAAGGAAGGGGCGGACAGTGAGAATCCCGAGGACCTGTGTACCTTTCTCATTTCCCGTGCCTGTAAGAACTCAACACTGGCCAACTACCTCTACTGGTATGTAATAGTGGAGTGTGAGGACCAGGACACCCAGCAGAGAGACCTAAAAACGCACAAGATGTACCTCAACGTCATTGGGAGGTTTAGCCAAGCGCTGCTCAAGggtgaTAAGAGTGTGAGGGTGATGCGGTCTCTCCTGGCATCCCAACAGACGTTTGTGGACAGACTGGTGCAGCTGATGAAGGCCGTGCAGAGAGAGAGCGGCAACCGCAAGAAGAAGACGGAGCGACTGCAGGCTCTGCTGGCGGACAATGAGAAGGTGAACCTGTGTGAGATTGACCCCATCCCGCTACCTCTGGAACCCTCGGTCAGAATCCGAGGCATCGTACCAGACACCGCCACGCTATTCAAGAGCGCCCTGATGCCAGCCAAGCTGATCTTCAAGGCGGAGGACGGGGCGATGTACCCGGTCATCTTTAAACACGGAGACGACCTGAGACAAGACCAGCTCATTCTACAGATCATCTCTCTCATGGACAAGTTGCTCAGGAAAGAGAACCTGGACCTGAAGTTGACACCTTACAAAGTGCTGGCTACAAGCACCAAGCATGGGTTCATGCAGTTTGTTCAGTCAGTGCCTGTGGCTGAGGTCCTGGCCACTGAAGGAAACATCCAGAGTTTCTTCAGAAAACACGCCCCCAGTGAAAAGGGGCCCTATGGCATCAGCCCTGAGGTGATGGACACCTACGTCAAGAGCTGTGCTGGTTACTGTGTCATCACATACAtcctgggtgtaggagacagaCACTTGGACAACCTGCTCCTCACAAAGACTGGAAAGTTGTTCCACATAGACTTTGGCTACATCCTGGGTCGTGACCCCAAGCCCCTGCCTCCTCCTATGAAGCTGAGTAAGGAGATGGTGGAGGGGATGGGCGGCATGCAGAGTGAACAGTACCAGGAGTTCAGGAAACAGTGTTACACTGCCTTCCTACACCTCAGGAGGTACTCTAACCTCATCCTAAATCTGTTCTCTCTCATGGTGGATGCCAACATTCCCGACATTGCCCTGGAGCCTGACAAGACTGTTAAGAAGgTGCAGGACAAGTTCCGATTGGACCTGTCGGACGAGGAGGCGGTGCATTACATGCAGAGTCTGATTGACGAGAGTGTGGGAGCTCTGTTTGCTGCTGTGGTGGAGCAGATACACAAGTTTGCCCAGtACTGGCGCAGATGAGAAGGACCATCTGAACAAtggatgaacagacagacaggaggggtTGTATCCATAGTGACACTCCCCCTCccttgtgtgagattgagaggaTCCATCCAGGACACTGCTGAATAGAGGCCAACCTCTActgcaaaaacaaaacaatgactGATGTTTTCAttttgtatatattatatatagatATAAAACTAATGGCCAAATAAAAACCATGTTGATACAGTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992420 lncRNA upstream 61045 42507949 ~ 42508187 (+) True G1739788
TU1992019 lncRNA upstream 72008 42496955 ~ 42497224 (+) True G1739438
TU1992015 lncRNA upstream 77427 42491438 ~ 42491805 (+) True G1739434
TU1992006 lncRNA upstream 86703 42474002 ~ 42482529 (+) True LOC110500464
TU1992472 lncRNA downstream 6773 42592986 ~ 42599053 (+) True G1739836
TU1992502 lncRNA downstream 69177 42655390 ~ 42661095 (+) False c21h4orf48
TU1992503 lncRNA downstream 69177 42655390 ~ 42661164 (+) False c21h4orf48
TU1992505 lncRNA downstream 69177 42655390 ~ 42661095 (+) True c21h4orf48
TU1992508 lncRNA downstream 103415 42689628 ~ 42692054 (+) True LOC110500846
trnan-guu-198 mRNA upstream 22092 42547067 ~ 42547140 (+) True trnan-guu-198
trnak-cuu-149 mRNA upstream 24776 42544384 ~ 42544456 (+) True trnak-cuu-149
XR_002470111.2 mRNA upstream 86702 42473267 ~ 42482530 (+) False LOC110500464
XM_021577844.2 mRNA upstream 158403 42407650 ~ 42410829 (+) False si:ch211-1o7.2
XM_021577845.2 mRNA upstream 158403 42407931 ~ 42410829 (+) True si:ch211-1o7.2
XM_021577860.2 mRNA downstream 47180 42633393 ~ 42641281 (+) True faah2b
XM_021577861.2 mRNA downstream 69148 42655361 ~ 42661095 (+) False c21h4orf48
XM_036957894.1 mRNA downstream 69204 42655417 ~ 42661095 (+) False c21h4orf48
XM_036957893.1 mRNA downstream 90732 42676945 ~ 42690279 (+) False LOC110500846
XM_021577865.2 mRNA downstream 204391 42790604 ~ 42800548 (+) False LOC110500477
TU1992021 other upstream 66875 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 213905 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 280732 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 671376 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 677865 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 669440 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 681001 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 681118 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 802976 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 860837 43447050 ~ 43451167 (+) False G1740398

Expression Profile