G1739831


Basic Information

Item Value
gene id G1739831
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42582533 ~ 42584132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1992467
ctcagcaggggtttagtgtgtgtgtgtgtgtgtgtctctcagtaggggtttagtgtgtgtctctcacagcaggggtttagtgtgtgtgtgtttctctctcagtaggggtttagtgtgtgtgtgtctctctcagcagaggtttagtgtgtgtgtgtctctctcagcagaggtttagtgtgtctctgtctctctcagcagaggtttagtgtgtctctgtctctctcagcagaggtttagtgtgtctctctctcagtaggggtttagtgtgtgtgtgtgtgtctctctcagcagaggtttagtgtgtgtgtgtgtgtgtgtgtctcttttagcaggggtttagtgtgtgtgtgtgtgtctctccctttctctcttagcaggggtttgtgtgtgtgtctcttaacGGGGGGGTGTGACTGACAACATTCCGCTTAAAAGGCAGCGCgcaaaattgatttttttttgaaatatgtaactttcatacattaacaagtgcaatacagcaaatgaaaaacttcttaatctacccattgtgtccgatttcaaaaaggctttacagggAAAGCACAACGTATgattgttaggtcagagcctagtcacaaaaacacaaccatttttccagccaaagagaagtcacaaaaag

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1992467 True 640 lncRNA 0.45 2 42582533 42584132

Neighbor

gene id symbol gene type direction distance location
trnan-guu-198 NA coding upstream 35393 42547067 ~ 42547140 (+)
trnak-cuu-149 NA coding upstream 38077 42544384 ~ 42544456 (+)
LOC110500464 NA coding upstream 100003 42473267 ~ 42482530 (+)
si:ch211-1o7.2 ankrd53 coding upstream 171704 42407650 ~ 42410829 (+)
si:dkey-185m8.2 LOC106608874 coding upstream 212294 42354556 ~ 42370239 (+)
faah2b LOC106608863 coding downstream 49261 42633393 ~ 42641281 (+)
c21h4orf48 cssa07h4orf48 coding downstream 71229 42655361 ~ 42661164 (+)
LOC110500846 nat8l coding downstream 92813 42676945 ~ 42692054 (+)
LOC110500477 LOC106608861 coding downstream 206472 42790604 ~ 42800548 (+)
LOC110500479 LOC106608859 coding downstream 237583 42821715 ~ 42834094 (+)
G1739788 NA non-coding upstream 74346 42507949 ~ 42508187 (+)
G1739438 NA non-coding upstream 85309 42496955 ~ 42497224 (+)
G1739434 NA non-coding upstream 90728 42491438 ~ 42491805 (+)
G1739430 vax2 non-coding upstream 102367 42479741 ~ 42480166 (+)
G1739836 NA non-coding downstream 8854 42592986 ~ 42599053 (+)
G1739867 NA non-coding downstream 108363 42692495 ~ 42694785 (+)
G1739909 NA non-coding downstream 145878 42730010 ~ 42730232 (+)
G1739440 vax2 other upstream 80176 42501349 ~ 42502357 (+)
cxcl8c cxcl8c other upstream 294033 42285056 ~ 42288500 (+)
G1739103 NA other upstream 684677 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1553397 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 671521 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 683082 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 805057 43389189 ~ 43390299 (+)
G1740398 NA other downstream 862918 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 885686 43469818 ~ 43470325 (+)

Expression


Co-expression Network