RNA id: XM_021577912.2


Basic Information

Item Value
RNA id XM_021577912.2
length 1400
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110500510
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43382881 ~ 43385078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctagctattaAACCTTTAGCATCAAAACATTCCTCAAACGTCCTACTTTTGCCCAATTAAACTGGCAAGTTTGTTGAACCCATTGAGTATCGTACACAGCTACATTTTTATAGAGTTGTAGCTAGCCACTAATTTCAGAAAGAAATGTTAGAACTAACGTTACAGGTATTTGTAGTAGCAGTATGAcagttagctagcatgctagtatGCTAAGGATGGCAGAGGTTGGATGTTGCATACCTTGTATTGAGACACGTTACATCATCAACGAAACTTTACATCATCAACCTCTGTGTGAAGTGAGTGTATGAAGTTTCACCAAGTTGTTCTTGTCCCCGACAGCCATGTCTATGTGCGACGACACTCTGCTCTGCAACTACCCAAAGTGTCGGGCGAAGCTGTGTGGGTTCGCCTGGGTCACAGCTTGCTCTCACGCCTTCTGTGACCAACATGGATCCGGAGAGTTCAGCCGCTCCCCGGCAATATGCCCGGCCTGCTCCTCTGCACTCTCGGGAAAGCTGGACATCGTGCGCACTGAGCTGTCGCCATCTGAGGAGTACAAGGCCATGGTGTTGGCGGGACTGAGGCCAGAGACAGTGCTGGACATAAGCGCCCGTGCCCTGGCTTTCTGGACTTACCAGgtgcACCAGGAGCGTATGTTCCAGGAGTACAGTCTGTCCCGGGCCGAGGGTCAGGTGAAACAGATGGAGAAGGTGCTGACCCAGCAGAACCAGAGCAGAGAGCTGGAGCTCAATGCCATGAGAGGGGAGGTCACCTCACTGAAGAAGGTGATGGAGGAGTACAAGAGGAAGTACAGTGAGGTATCAGAGCGTCtgatggagaggaacagacagtACCAGAAGCTACAGGGGCTCTATGACTCGCTGAGGCTACGCAACATGGTGGTGGGGGACAGAGAGGCACCACGCCAGCCAGGACCCCCGGAGTTCAACACAGGGGTGGTCAGGAAGCCCTCTCCCCGAGGTAGTCCTCACTTCCTGGGCATGGGCCCTGAGGGGGACAGCCGCCTTTTCTCCTCCCTGGAGCCCGATGCTGGAGCCAAGACCTTCTTCCAGTTCAGCTCTCCTGCCAGAGACAGGGGCCGGGCCTTACTCAAGAAATACTGAGACTAGAATTCCAATTCTAGAACTCCAGgattagaatgaatagaataaTTGTATGTCTGACTGAGGCAACGCTGGTTGGGTACCTGGCTGCTGGATCAATGACAGCATTATCATAGTGTAGACTGTCAGGTTATCTAAGGATGGTTTGATATTCATATTGTAGTTGCCTTTTTCTTACCTGAAGTTACTGTATCTTGACAAAATGCTCTGATACAACATTTATGTTTGCATTGCACTTATTTTGTCAATAAAATTCAGCATGACCATTGTAA

Function

GO: NA

KEGG:

id description
K10639 CCNB1IP1, HEI10; E3 ubiquitin-protein ligase CCNP1IP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1993078 lncRNA upstream 11052 43344536 ~ 43371829 (+) True G1740345
TU1993073 lncRNA upstream 49188 43333476 ~ 43333693 (+) True G1740340
TU1993072 lncRNA upstream 50314 43332130 ~ 43332567 (+) True G1740339
TU1993070 lncRNA upstream 52539 43330070 ~ 43330342 (+) True G1740337
TU1993069 lncRNA upstream 53716 43328903 ~ 43329165 (+) True G1740336
TU1993104 lncRNA downstream 149 43385227 ~ 43386232 (+) True G1740367
TU1993112 lncRNA downstream 18460 43403538 ~ 43404426 (+) True LOC118942788
TU1993138 lncRNA downstream 45205 43430283 ~ 43432161 (+) True G1740388
TU1993164 lncRNA downstream 77775 43462853 ~ 43463081 (+) True G1740411
TU1993161 lncRNA downstream 79752 43464830 ~ 43466342 (+) True G1740408
XM_036957910.1 mRNA upstream 28444 43346414 ~ 43354437 (+) True oxa1l
XM_036957911.1 mRNA upstream 37102 43335680 ~ 43345779 (+) False LOC110500504
XM_036957912.1 mRNA upstream 37102 43335682 ~ 43345779 (+) True LOC110500504
XR_005038608.1 mRNA upstream 37404 43335680 ~ 43345477 (+) False LOC110500504
XM_036957908.1 mRNA upstream 71908 43305101 ~ 43310973 (+) False LOC110500503
XR_005038440.1 mRNA downstream 12476 43397554 ~ 43404747 (+) False LOC118942788
LOC110500847 mRNA downstream 20420 43405498 ~ 43409042 (+) True LOC110500847
XR_005038610.1 mRNA downstream 627775 44012853 ~ 44019901 (+) True LOC118942933
XM_021577920.2 mRNA downstream 654874 44039952 ~ 44049588 (+) False LOC110500517
XM_021577921.2 mRNA downstream 712859 44097937 ~ 44099926 (+) False pop7
TU1993038 other upstream 55143 43255653 ~ 43327738 (+) True G1740312
TU1993035 other upstream 114738 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other upstream 114738 43267331 ~ 43268143 (+) True LOC110500499
TU1992021 other upstream 880524 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 1027554 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1993101 other downstream 4111 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 61972 43447050 ~ 43451167 (+) False G1740398
TU1993149 other downstream 65344 43450422 ~ 43451167 (+) True G1740398
TU1993165 other downstream 84740 43469818 ~ 43470325 (+) True G1740412
TU1993210 other downstream 139658 43524736 ~ 43526726 (+) True G1740453

Expression Profile