RNA id: XM_036957910.1


Basic Information

Item Value
RNA id XM_036957910.1
length 1844
RNA type mRNA
GC content 0.49
exon number 10
gene id oxa1l
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43346414 ~ 43354437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCTTTCCGTACAAACTTCTTTTTTTTACTAACAATTCCAACATGGCTGCGATCAGGAGTGGAGTGACTCCGGGTTGTCTAACGAGATGTTTTTTAAGACAAAGTGGAATATCAAGTGCAGGCAACGCTTCATTTACAGAGAGATGGAACCAGAGGTTTCTACAGAGATCCCATCTTCACACAGTAATAGAGTGCAGGAGTCCTACAACTAGAGCTGTTCTCGGTCGACGTCACAATGGGCGGTTATTATTGGTCAGCGCAGTGTCCGTCAGGCACAACAGCTCACAGGTCCCAAGTGAAAGTATTCCTACGGCAACTCCAGTGCTGGAAGCATCCATTGCCAGCCCTGTCGTCGTTGACCCCGCCTCTATTACCACAGAGCCAATCGCCGAGCAGGTGTTAGAGGCTGCACCAACCGCAGTGGATATTCTGCAGGGGGTGGGAGCAGAGCTGAGCCTATCAGAGCTGGGCCTGGGAAGCGCCACTCCTGTTGGCCTGGTCCAGAACCTACTGGAGTTCATGCATGTGGACATTGGGATGCCGTGGTGGGGAGCCATTGTTGTAGgcaCAGTGCTGGCTCGCATCATGGTGTTCCCGGTCATCGTGAAGGGTCAGAGGGAGGCGGCCAAGCTGAACAACGTTATGCCAGAGATGACTAAACTCACCAACAAGATGAACGAGGCCAAACAGAGTGGAAACAAGTTCGACTTTGCTAAGGCGTACTCTGACCTGACCATGTTCCAGAAGAAACATGACGTCAACCCTCTCCGTGGTTTCCTTGTCCCTTTGGTGCAGaCTCCAGTCTTCATCTCCTTCTTCATCGCTCTCAGAAAGATGTCCTACCTCCCCGTCCCCAGTATGCAGACAGGAGGTTGCTTGTGGTTCTTAGACCTCACAGCAGCAGACCCTTTCTACATTCTCCCCATTGCTGTGACCGGGACCATGTTCGCTATACTGGAGCTGGGGGCAGAGTCTGGTGTGGACAACCCTAACCTGAAAGCCATGAAGACAGTGTTCAGAATCATGCCCTTCGTCATCCTCCCTCTCACCATTAACTTCCCCACGGCGGTGTTTACGTACTGGATGACGTCCAACTGCTTCTCCCTGGCCCAGGTGGCCCTGCTCAAACACCCCCTGGTCAGACGGAAGCTGAGGATCCCAGAGAGGATCGAACACCCTACCTCCGCCCTGCCCCAGAACGACGGCTTCTTCGAGACCATCAAGAAGGGCTGGAAGAATGCTCAGCTTGCCCAGcagttggaggagagggagaggaggatcaAGAACCACCTGGATATTGCATCAAAAGGTCCATTGAGACAGACCTTCACTCACAACCCTCTACAGCAGTCGACACCATCCATTGCAGCAGCAGCAACCAAGTCAGCCAAAGCAAAACAAGCATCCCCGGCAACCGGTGGTAAGAAGAGGCCATGGGAGGAGACTATTGGTTGAAGAAGAGTGACAGACCGTTTGAAGGCCCAATGAATTGTGTGTGCATATTTATTGAGCGAGAAGTGTGTGGAGGGATTGGTAGACAGGACATGGGCGGCGCACAGGGTTTGTCATAAATGTagtctaaataaagagcaaaCTTCTGTTGCCTTAAAACGTCTGTGTACATTATGACAACCTGAATTCTGATTTGAAAACGTATAGTTGATTAAATCCATtggaatgaatatatatatatatatatatatatacacacacaattgaCCATTCCCCGTTGTGCTGTTGTTATTTGATAGTTTTCAAGAGCTAAGAAGTTAAAGCAGATATCCAATTTATTGACTTGGATACACATCCTGAATGCTAATCAATAAAAATGTGTTAAATTCGC

Function

GO: NA

KEGG:

id description
K03217 yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1993073 lncRNA upstream 12721 43333476 ~ 43333693 (+) True G1740340
TU1993072 lncRNA upstream 13847 43332130 ~ 43332567 (+) True G1740339
TU1993070 lncRNA upstream 16072 43330070 ~ 43330342 (+) True G1740337
TU1993069 lncRNA upstream 17249 43328903 ~ 43329165 (+) True G1740336
TU1993068 lncRNA upstream 17812 43328395 ~ 43328602 (+) True G1740335
TU1993104 lncRNA downstream 30790 43385227 ~ 43386232 (+) True G1740367
TU1993112 lncRNA downstream 49101 43403538 ~ 43404426 (+) True LOC118942788
TU1993138 lncRNA downstream 75846 43430283 ~ 43432161 (+) True G1740388
TU1993164 lncRNA downstream 108416 43462853 ~ 43463081 (+) True G1740411
TU1993161 lncRNA downstream 110393 43464830 ~ 43466342 (+) True G1740408
XM_036957911.1 mRNA upstream 635 43335680 ~ 43345779 (+) False LOC110500504
XM_036957912.1 mRNA upstream 635 43335682 ~ 43345779 (+) True LOC110500504
XR_005038608.1 mRNA upstream 937 43335680 ~ 43345477 (+) False LOC110500504
XM_021577900.2 mRNA upstream 22540 43305096 ~ 43323874 (+) False LOC110500503
XM_021577897.2 mRNA upstream 35441 43305098 ~ 43310973 (+) False LOC110500503
XM_021577912.2 mRNA downstream 28444 43382881 ~ 43385078 (+) True LOC110500510
XR_005038440.1 mRNA downstream 43117 43397554 ~ 43404747 (+) False LOC118942788
LOC110500847 mRNA downstream 51061 43405498 ~ 43409042 (+) True LOC110500847
XR_005038610.1 mRNA downstream 658416 44012853 ~ 44019901 (+) True LOC118942933
XM_021577920.2 mRNA downstream 685515 44039952 ~ 44049588 (+) False LOC110500517
TU1993038 other upstream 18676 43255653 ~ 43327738 (+) True G1740312
TU1993035 other upstream 78271 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other upstream 78271 43267331 ~ 43268143 (+) True LOC110500499
TU1992021 other upstream 844057 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 991087 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1993101 other downstream 34752 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 92613 43447050 ~ 43451167 (+) False G1740398
TU1993149 other downstream 95985 43450422 ~ 43451167 (+) True G1740398
TU1993165 other downstream 115381 43469818 ~ 43470325 (+) True G1740412
TU1993210 other downstream 170299 43524736 ~ 43526726 (+) True G1740453

Expression Profile