LOC110500903 (LOC106608527)


Basic Information

Item Value
gene id LOC110500903
gene name LOC106608527
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 58411942 ~ 58441271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958286.1
AGAGTGTAGAAAACATAGTAAGGAAAAGGAGGCCCGCCTGAAGCTTATTTTTCTACGTCATTAAAGCTATGTCCGAAAATAAACTTTACTTTCGAATATCCCGACGCATTCTTTAACCGAGGTGTAAGTAAAGAACTGTTAACTCTGTCCGTCTATTATGCGTTTATACGCACCGGGTCAGTGCGTCGCAGTTGGCTTACTAGTAGTGGAACATGAACCATCACTCGAACTCCGCCCTGGACAACACTAGTTGCCAGAGGAGTTGTCACTTCTCCAAACACAGTGGGACAGATGAAACTGTCAGCGTTGAATTGTGATGGTGGATGGTGAGCCATTGAAGCTTCGAGCGGGATAATAAATGAATGCGCGATAGCCAATGAAGATGGGTGATTCTATCCTAGAATTAAGACAAATGTGGACTTCTAATAACGGAATTGTCCCCAAAAAGAAGACAAGGAGAGTGAAAGAAGTTGTAATATTTCCACAAATTTCCAATGGCTCTACCTCACTGCGTCGGCATCAGGACAGCAAAAACAAGAGATCGACCATTCCCACATTCCAAAGACTCCAGGAGATGTTCTTTTCCGACTGTCGATCCGATCATGCGGTTCTAGCGAAAAAGATTAGGTCCAATAAGAGAGCAGACAGGAGTATTCCTTTGACCAAAGTCAGTGAGGAGTCAGAGTCCCAGATAACAGCTCACCTCAGATATCAATTTCTGCAGCGCCATGTAAAGTCGTATGGACAAAGCACACCGTCAGAGCAGAAAGGGGTGACTGTGCTGCATCTGCAGAACACATATTTATTCAAGgACAAAGCAGCTTTCAAAGCCTTACCAGATGGAGGACTTGATGACAGTGAGGATACTGCTCCTCAAAACCTGCTGCAGAGTTTGGTGGCactggaagaagaggaagaggaagaggaccgTGTTTGTGTAAACCAGGATGTCACCACATGGGCTGAAAGTGTTCCCGAAATTGTCAAATGTCTATTGGCTGGATCTTCTAATGGTGTTGTCAAGACAACAGGAGGTGACCCTCATTCATTAGGTCTCACAGTTATAACAGATGACCTGGAACGTGCCAAGAAGAGGAGATTCATGATCTACATATGTGGTGGATATAAAGACACGGTGGCAGAGAGGAGTGCGTTGATGGAGACTGTGTTCCCTCGTCTGTACCTCTACTGCAAACAGAGGGGCTATGACTTCAGGATGGTGGACCTGCGCTGGGGCGTGGGAGACCCTGTGTCGGATAGACACGACACGGCAGAGCTGCACGTGGAGGCCCTCGCACAGTGTCAGGAAACACTGGGGACAAACTTCATATTATTCCTTGGTCAGAAGTACGAGGTCCAGACCCTGCCCAGCACTATCTCCAGAGAGGTGTTTGAGGCCATCGTGAACgtggtggagagagacagacagaagatgTCCAAGAAAAAACACCCCAAGATGGACGACGTCatcagtgattccaagtctaatATCGCCACAGGAAGTGACACGGGCAGCTTTTTTGTTCCAGAACAAAACAACAATCATGATTCAGGAGATCCAGCTCCGAATTCTGGGTTAATGAGCGATGAGATTTCCGTATCCCGTAATTCCCTCTCTGATGCAGATGAGACGCGGATAAGTCCTGCGGCGACGAGGTGTTGGGCAGACTTCGACCGGGATCTGATCCTACTCCAGACGTGGTACAGACTAGATGAGAACTGTGATCCTCCTGTGTACCGTCTACTCCCTGTGAGCACCCAACAGCCTGACTTCCTGAGTAGAGATGGCCAGCGCAGGAGGCAGGCGAGGAAGGCGTGGCAAGCTACATGCTTGCATCTGTGGGGGGTGCTACAGAGGAGTGGGACAGAGGCtctgggggaggaggggacaTCGCACCTCCTCAGGACAGTTCTAGACTGGGAGGTAGAGCAGGGCCTCCAGTCACTAGGAGCCAAGGCCCCTCCAGAGGAACACTGCCACTGCTATAAGAGGGTCATCCCTGACCTCCACTACAGCCTGAGGAACGAACACGCTGCCCACTACATCGACTTGCTGGAAGGTCGACCGCAGGTCAACCACACTCTGAATGCAGCACACCAGGGCTTCATGGATCGCGTTCACAAAAagTTGCGCCACACCAACATCTATGAGCGTAACGTGGACTGGGGAAGGAATGGCCTGAACCCCAAACATAACCGATCCCAACAGTTCtacacagaacacatctcctctCACTTCCAGAGGACTGTCATCAACTCTCTGAACaaAGTCATGAAGGGGAACAAAGCCAAAGGCTCCTTTGACATCAGACGGAGAGAAGCATCTAGAATGAGGATACAGGAGGAGATCCATCGCCATGTTAACCACGGACACACTCTGGAAAATCACCATGTGTTGAGAGATGGCTTCCTGGGTGAGATGAGGAGGGCCGTGGAGGAAGGGTCTTCTCTCAGACCTATCCTCCTACTGGGTCCCCCTGGCTGGGGCAAGAGCACCACCATGGCCAGACTGGCACACCTCGCCCCCTCCTGGATTACTGGAGCTGTGAAGGTGCTGGTGTGTTTCGTGGGCCTGACGGGTGAGAGCAGGAATGTGCGTCTGGTTCTCCAGAACCTGTGCGTTCAGCTGGCTGAGACCTACAGCCATCACACTGAACTCTCTGAGGGTCTCCCTCATTTGGTGAATGAGTTCCACTCCCTTCTTGGTCAGGTGAGGGCGGACAGCCCCGTAATCCTTGTGCTGGACGGGATAGATGCTCTCTCCGAGGAGCACGGAGCAGACCTCTCCTGGCTGTCTACACCTCTCCCCCCACACGTCCACCTCATCCTGTCTGCCACCACAGACTCTGCCTGCGCCCACACCCTGCAGAAGTCAGCCCAGCCCATTGTCCTGTCCCTGCCACCCCTCAGTCCTGATGACATCACCAGGGCTCTAAAACATAAACTCCAGACTGACCACCGCAGGCTCCAGGACTGGCAGTGGCAGCTTCTCCTCCACGCCTGCCTTTcctgtccctcccctctctacctggAGGCTGTCTATGCTGAGTCTGTCCTCTGGAGCTCCTTCTCCCCCCAGGGCAGCCTAGGCCTCCCACCCGACCTGGAAGGGCTCTACGTAGGCCTGCTGGCTTGCTTGGAGAGGACCCACGGGGAGCAGCTGGTGGGACGGGCCGCCGCGGTTATATCGCTCTCCAGAGGGGGCGTCACGGAAGAGGAGCTACTGGACCTtctggggagagatgggaaggtTCTACAGGAGGTATCGCTCTCCCATtcatcctccacttcctcctccagcCTTCCCAGGGTGCCGTGCGTGCTGTGGGCGCGGCTGAGACGAGACCTTGGGGGTCACCTGACGGAGGCGGAGACAGATGGGACGTGGGTCTACCACTGGACCCACTCTGAGCTGGGTAGGGTGTGTGTGAAACGGTACCTCAAAACGGACGACTCCCGCATGCTTCTACACGCAAACTACGCAGACTACTTCCGGGGTACGGATAGCCCACACAGAAACATATTTCAGCCGCTGGCGTGGACACTGGAGGAGGACTCGACGAAAAGTTATGTGTTTAACCTCAGAAAGCTCCATGGCCTGCCCTACCACCTGGTTCGGTCAGGCCAGATACTGGCCTTcctgtctgagtgtgtgtttaaCTATGAGTTCCTGCTGCACAAGGCCTGGGGTCTGTCTGTGCTCCATGTACAAGAGGACCTGAAGGGCGTCGTGCTGCCAGAGAAGGAGTTGGTAGATATGGAGGTGTTGGCTGCTACTCTGGAGCTCTCCAGGACCGTGCTGCTCCAGGACCCCTGCCAGCTGGCCTCCCAGGTTATGGGCCGTCTGGGACAGATGGTTGCTGAAGACCTCCCCGTGGCTCCAGGTGACCCACAGAAGTTTAGCTACCTGCATGCCCTGCTGGCCCAGTGTGCCCGTTCCTCTCTGCCAGTCCTGGTGCCCTCCTACAGCTTCCTGGTGCCCCCAGGAGAGATCCCACACACCCTGCTGGCAGGCCACACGTCCATAGTAACGGCCCTGACCAGGGGACAGAGGGGTCTGGTGGCAGCCACCTGCGATGGGGACGGCACCCTGAAGGTGTGGGACCTGGAACTGGGGCGCGCCGTGAGGACTCTGGAGGGGGTGGGGGGCGTGGTGGGCgactccctcactctctgtctagaGGACAGGGTCCTGGTGGTTCGCATGGGACAGAGTCTGCAGGTCAGAGAGGTGGATTCTGGGAAAGTGATCTACTCCGAGAGTGACTCTCTGGACGTTCCTGTGGTAACCACCACGTGTGACGGACAGCTGCTGGTAGCCTTCTATGATGGAAGTCATCTGGTGAAGGTGTTCGACCTGGTCTCGTCCTGCTCTCTACTCTGCTGTGTCAACATTACCCTGGACTGTGACCCCATCCATAAAGACCATTCCGTATTGGTCTCCCACAACTCCATCAAAGACTATGTCCTTTTCGCCTACAGgtctGGAGGTCAGGCAGCGGTGCTTAGTGCCAGAGGGggggctgtgttgtctgtcctcaGAGCCCAGCATGGTGCTGCCTCCATACAAGGAGTGGAGATGACCAATCAGTACCTACTGCTCTTCTGCAGgtaCCCTTACAAGCGGGACAGTGAGATCATTCATATTGAGCTGTACAGCACGGCCAGTTTCAAGTACGAGCGCTCCATCCTGGGCTGCAGCCAGGACGACATCTCCCAGGTCACCGTCAACCGGACGGGGACGCACGCCGTGGCCTTCTGCCCCTCCCCCCGCACCGGCATCACGCAGGTCGTGACATGGAACCTGGAGACAGAGGACCACAAACACATCGCCCGTTTCCCCGGGATACTGACTGCAGgtGTGTGCTTGGAACTGCGGTTCTGTGTGGGCGTGTGCAGTGGGGAGAGGTACCCAAGGCTGTGGGATCTGTCCTCCAGGGTCAATGACCAGACCCTCACCTACAATGTCCACAAGGTGAAGAGGGACGGCACAGAAGAGGTCATCCTCATGGGGAAACGCCCACGCTACGCGGTGTGCAAGTCCCTACGGCCTGGCACGGTACGGGTCTGGAACCTGGCCAGATCCAGGTTCACAGGTCGACCTGTCAGAGTGGAGCACGGTCTCTATGGCAACACCGACGTGGCCTTGGCCCACGACCTGAAGCTGTACAtcctgacagacagagggacGGCCACCTTCACAGACACCCCCTCGCCCATATTCCAGACTCTACTGGTCTATGACCTGATCAAGAGAAGCTACGTGAGGAGACAGTCTGGTCTCTACATCGTCCCCTGTCCCCGACACGAATACAGGCTTCTGGAGGGGCAGCTACTTCTGGGTCTGTCTGAGACGAGGAACCATCTGATTTTGTGGGACCTGGAGTCTGGGTATATCAAAGGGAGGATGAAAGCATCCCACACAGAGTTTCTCCTGTCCAGCAGCACCGTCAGAGACAGACAGTCCCAGATACCACCAAATGAGACCACAGCTCTAGTGATGCCCTGGGACAGGCGGACAGAGAGCCACTCTGCTAAGTGTAGGAGGCTGGAGAAGGAGGatcagagggagaaggaggagcagCGCAGTCTAGACAGGGAGAAATACAACTCCATAGACCAGTACCTTCTCAGTGGGGACCAGCAGGTGGTGGTGTGTTCCTATTTCTCCCACCACCTCAACGTTTTCAGCGTGAGCTCCCAGGACCACCTCCACACCCTGGAGGATAGGACGTCCCTGCTGATCCTCCACACCGCCGCCCTCACACACCCCGGGGGACACCTGGTGCTGGCCAACTACAGCCAAGCTCAGCATATACCTTACCTCACCCTCTGGGACCTTCAGAAAGGCACGGTGAGGAAAAGATTGAAGAACGAGCCAGGAGTCTGTTGTGTGGCAATCACAGATGACGCCAGCAGAGTCGCCTTTGGGATCAGCGGATGTAACAAGCTTAAAGTGTGGGATCCCTTCAGGAGGAATCACAAGACTATCTCTGGCTACGCCAGCCTGAGACTAGGAGGATCCAACCAGCTTTATATCACTGAGGGAGGAGCCAAAGCCATTCTACTAGCAGGTGAGCTGAGCCTATGGGACTTGGAGGCCTGCAACatcctctctgtcctttccccAGATGCCCACATCCAGTGTCTGACCCTCCTTGGAGGAGACAACAGTAGCACCCTACTGTTGGGCCTTAGCCACAGCCCCGCCCTCGTCGCAGTCAGGCTGACGTCACAGTCACAGGGGGTCGCCGTGGCAACCGGCTCCAGGGACGAAGACGTGTTCTCGGAGTCCAGTAGTAGCGAGGATGAAGACGAAAAGGACAGTCAGACATGTAGGACTTGAGTAGAGTTTGTTCAGGAACTTCATGTTATGAGTATGACTTACCGAGACACTTCAGCCTTCGAACAGGATGACCTGATAAGTAGAATGtgaagtgtgtatatatatatatatatatatatttttaaaaagacaAGGATTGGTGATATAAAATAAATGCTACATGCTATTACACTAGTTTGACAAAGTATGTAGAATGTCAACACAAACATGAAATACCATTCTGACGGTGCCCccgatcatcatcatcatcatcatcatcattattacttaGCAAAGCAAAGTGCTGCACCTGAGGATGGTCAGTTGAAAATGAAATCATAAAATAACCTAAAAATGTGAAGTATCGTGTCAAATCCCAGCTCAGGTAAGTACTTCACATAAGGCTGAAACAGAGCAATCTACCCCTCCATCTGccatacaaataaaaatgtagcACAATGAACAATTTAGCCCCATCTGGTAGTGACCAAATCAATGAATCGAGACTTGTTGATTTGgaacatatttatttttttaaactgcataaGAAATGAAACTTACTGAATTGAAAGAAAGGGGGCGAACATAATGCATTCATTTTCACAAAAAAAA
>TU2012166
GAGCTGTGAAGGTGCTGGTGTGTTTCGTGGGCCTGACGGGTGAGAGCAGGAATGTGCGTCTGGTTCTCCAGAACCTGTGCGTTCAGCTGGCTGAGACCTACAGCCATCACACTGAACTCTCTGAGGGTCTCCCTCATTTGGTGAATGAGTTCCACTCCCTTCTTGGTCAGGTGAGGGCGGACAGCCCCGTAATCCTTGTGCTGGACGGGATAGATGCTCTCTCCGAGGAGCACGGAGCAGACCTCTCCTGGCTGTCTACACCTCTCCCCCCACACGTCCACCTCATCCTGTCTGCCACCACAGACTCTGCCTGCGCCCACACCCTGCAGAAGTCAGCCCAGCCCATTGTCCTGTCCCTGCCACCCCTCAGTCCTGATGACATCACCAGGGCTCTAAAACATAAACTCCAGACTGACCACCGCAGGCTCCAGGACTGGCAGTGGCAGCTTCTCCTCCACGCCTGCCTTTcctgtccctcccctctctacctggAGGCTGTCTATGCTGAGTCTGTCCTCTGGAGCTCCTTCTCCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958286.1 False 6937 mRNA 0.53 32 58411942 58441271
TU2012166 True 535 lncRNA 0.59 3 58420141 58422223

Neighbor

gene id symbol gene type direction distance location
rwdd rwdd4 coding upstream 216 58405236 ~ 58411726 (+)
lrch4 lrch4 coding upstream 270824 58084350 ~ 58141118 (+)
pcolceb pcolce coding upstream 391497 57996628 ~ 58020445 (+)
per1b LOC106608520 coding upstream 425784 57970308 ~ 57986158 (+)
LOC118942956 NA coding upstream 430171 57980783 ~ 57981771 (+)
si:ch211-212k18.7 cd68 coding downstream 15425 58456696 ~ 58464184 (+)
LOC110500780 caap1 coding downstream 71437 58512708 ~ 58523630 (+)
elavl2 elavl2 coding downstream 409812 58851083 ~ 58904451 (+)
LOC110500773 LOC106608508 coding downstream 902337 59343608 ~ 59348145 (+)
LOC110500769 LOC106608502 coding downstream 1022322 59463593 ~ 59514503 (+)
G1757285 NA non-coding upstream 9865 58401598 ~ 58402077 (+)
G1757283 NA non-coding upstream 10740 58400989 ~ 58401202 (+)
G1757034 NA non-coding upstream 28816 58382131 ~ 58383126 (+)
G1757027 NA non-coding upstream 40349 58369958 ~ 58371593 (+)
G1757335 NA non-coding downstream 50645 58491916 ~ 58493509 (+)
G1757341 NA non-coding downstream 67369 58508640 ~ 58509744 (+)
G1757350 NA non-coding downstream 91483 58532754 ~ 58532957 (+)
G1757365 NA non-coding downstream 114124 58555395 ~ 58555692 (+)
G1757467 NA non-coding downstream 131591 58572862 ~ 58573072 (+)
G1756789 NA other upstream 483698 57926480 ~ 57928244 (+)
G1755570 NA other upstream 1617368 56793731 ~ 56794574 (+)
G1755158 NA other upstream 2024320 56386407 ~ 56387622 (+)
LOC110500754 LOC106591080 other upstream 2820802 55590450 ~ 55592100 (+)
G1757578 NA other downstream 241866 58683137 ~ 58686523 (+)
G1758801 NA other downstream 1880944 60322215 ~ 60326620 (+)
G1758818 NA other downstream 1910375 60351646 ~ 60353092 (+)
G1758786 NA other downstream 1917559 60358349 ~ 60359351 (+)
G1759168 LOC101154678 other downstream 2280887 60722158 ~ 60722472 (+)

Expression


Co-expression Network