G1758818


Basic Information

Item Value
gene id G1758818
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60351646 ~ 60353092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2013992
tcttaacaacaacaaaacaacagtaCAGTAAACAAGTAAATAAAAGCATATTCAATATTATGAATGAATGTATCGAATAATTTGACCATAGAGCCATTTCCAGAGATCTGTATGGTTTTGGACTGGATAGAGCAGATCTGGGTTCAAACAGACATAGTCAGAGGAATAAACTTGGATTTAACCTGtttttagcatggacattgccagTGAGGGGattttccaccattttaaagtagtcaactgggtggggattctaATGGGTTGTGAGCAATCAGCCAATGATCAAACCATTGTCTTCTGTTTTCAAATTTGGTGCcatgtttttttaaaaatgtttttaaatgacttatatatatatctatatcaccGCCATCTTGTGGCCATGATAAATGAATGACACATGATTTGGTTTTAGGACTCCAGCACTGCAGGTGGAGGTAAATCACAAATATTAGCATAAAAATGGAGATAGTGTCAATGGCGCTGGCCATTCTGTCACAGACaccataatggcacagatacaaaagACGAGAACTCTCTCCAACTCTATGGCCTCACATGCTAATTGAAATCATTACAAAAGACGAGAACTCTCTCCAACTCTATGGCCTCACATGCTAATTGAAATCATTACAAATACTTTCTGTGTTTTGAGTTTACCAGTTGCAATGGAACTAATATAATAGTCTGGCAGTCCAAGcgagcaaaaaaacaaaacaaacgctaaatactatttgaacccagatgTGGTATTGAGTAACACAGCCAATAAGAGCAAGCGAACTATTAGCGacagacaaccagagacattcagGGCAGAACACATAGTGCAGTAGTTAATAACAGTATAGCATCTGTATACCTCTCCATGAAAACACGTTTACTATTAGTCcaatgtgtgtatttatactactgacATATTTGACATTTCATTCGTCAGCTCATTTTGTGTGTTcttgcatcagtgtgtgtgtgtgtgtgtgttccgtgaGTGTGTGTCCCTtgcgcactgtgtgtgtgttttctgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtgtcctctcctcaGCCCATTGGACATCCAGGCAGTCTAAAACTATCTGGAACAGGGCTGTCTAGTTTACAGATAATCTTGTAGATGGATTTCTTCCAGCAGGGG
>TU2013993
tcttaacaacaacaaaacaacagtaCAGTAAACAAGTAAATAAAAGCATATTCAATATTATGAATGAATGTATCGAATAATTTGACCATAGAGCCATTTCCAGAGATCTGTATGGTTTTGGACTGGATAGAGCAGATCTGGGTTCAAACAGACATAGTCAGAGGAATAAACTTGGATTTAACCTGtttttagcatggacattgccagTGAGGGGattttccaccattttaaagtagtcaactgggtggggattctaATGGGTTGTGAGCAATCAGCCAATGATCAAACCATTGTCTTCTGTTTTCAAATTTGGTGCcatgtttttttaaaaatgtttttaaatgacttatatatatatctatatcaccGCCATCTTGTGGCCATGATAAATGAATGACACATGATTTGGTTTTAGGACTCCAGCACTGCAGGTGGAGGTAAATCACAAATATTAGCATAAAAATGGAGATAGTGTCAATGGCGCTGGCCATTCTGTCACAGACaccataatggcacagatacaaaagACGAGAACTCTCTCCAACTCTATGGCCTCACATGCTAATTGAAATCATTACAAAAGACGAGAACTCTCTCCAACTCTATGGCCTCACATGCTAATTGAAATCATTACAAATACTTTCTGTGTTTTGAGTTTACCAGTTGCAATGGAACTAATATAATAGTCTGGCAGTCCAAGcgagcaaaaaaacaaaacaaacgctaaatactatttgaacccagatgTGGTATTGAGTAACACAGCCAATAAGAGCAAGCGAACTATTAGCGacagacaaccagagacattcagGGCAGAACACATAGTGCAGTAGTTAATAACAGTATAGCATCTGTATACCTCTCCATGAAAACACGTTTACTATTAGTCcaatgtgtgtatttatactactgacATATTTGACATTTCATTCGTCAGCTCATTTTGTGTGTTcttgcatcagtgtgtgtgtgtgtgtgtgttccgtgaGTGTGTGTCCCTtgcgcactgtgtgtgtgttttctgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtgtcctctcctcaGCCCATTGGACATCCAGGCAGTCTAAAACTATCTGGAACAGGGCTGTCTAGTTTACAGATAATCTTGTAGATGGATTTCTTCCAGCAGGGG
>TU2013995
tcttaacaacaacaaaacaacagtaCAGTAAACAAGTAAATAAAAGCATATTCAATATTATGAATGAATGTATCGAATAATTTGACCATAGAGCCATTTCCAGAGATCTGTATGGTTTTGGACTGGATAGAGCAGATCTGGGTTCAAACAGACATAGTCAGAGGAATAAACTTGGATTTAACCTGtttttagcatggacattgccagTGAGGGGattttccaccattttaaagtagtcaactgggtggggattctaATGGGTTGTGAGCAATCAGCCAATGATCAAACCATTGTCTTCTGTTTTCAAATTTGGTGCcatgtttttttaaaaatgtttttaaatgacttatatatatatctatatcaccGCCATCTTGTGGCCATGATAAATGAATGACACATGATTTGGTTTTAGGACTCCAGCACTGCAGGTGGAGGTAAATCACAAATATTAGCATAAAAATGGAGATAGTGTCAATGGCGCTGGCCATTCTGTCACAGACaccataatggcacagatacaaaagACGAGAACTCTCTCCAACTCTATGGCCTCACATGCTAATTGAAATCATTACAAAAGACGAGAACTCTCTCCAACTCTATGGCCTCACATGCTAATTGAAATCATTACAAATACTTTCTGTGTTTTGAGTTTACCAGTTGCAATGGAACTAATATAATAGTCTGGCAGTCCAAGcgagcaaaaaaacaaaacaaacgctaaatactatttgaacccagatgTGGTATTGAGTAACACAGCCAATAAGAGCAAGCGAACTATTAGCGacagacaaccagagacattcagGGCAGAACACATAGTGCAGTAGTTAATAACAGTATAGCATCTGTATACCTCTCCATGAAAACACGTTTACTATTAGTCcaatgtgtgtatttatactactgacATATTTGACATTTCATTCGTCAGCTCATTTTGTGTGTTcttgcatcagtgtgtgtgtgtgtgtgtgttccgtgaGTGTGTGTCCCTtgcgcactgtgtgtgtgttttctgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtgtcctctcctcaGCCCATTGGACATCCAGGCAGTCTAAAACTATCTGGAACAGGGCTGTCTAGTTTACAGATAATCTTGTAGATGGATTTCTTCCAGCAGGGG
>TU2013990
gtgtgtgtgtgtgtgtgttccgtgaGTGTGTGTCCCTtgcgcactgtgtgtgtgttttctgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtgtcctctcctcaGCCCATTGGACATCCAGGCAGTCTAAAACTATCTGGAACAGGGCTGTCTAGTTTACAGATAATCTTGTAGATGGATTTCTTCCAGCAGGGG
>TU2013991
gtgtgtgtgtgtgtgtgttccgtgaGTGTGTGTCCCTtgcgcactgtgtgtgtgttttctgtgtgtgtgtgtcccttgcggtgtgtgtgtgtttttcgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtgtgtcctctcctcaGCCCATTGGACATCCAGGCAGTCTAAAACTATCTGGAACAGGGCTGTCTAGTTTACAGATAATCTTGTAGATGGATTTCTTCCAGCAGGGG
>TU2013994
gtgtgtgtgtgtgtgtgttccgtgaGTGTGTGTCCCTtgcgcactgtgtgtgtgttttctgtgtgtgtgtgtcccttgcggtgtgtgtgtgtttttcgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtcccttgcggtgtgtgtgtgtttttcgtgtgtgtgtgtcccttgcggtgtgtgtgtgtgtgtgtgtgtgtgtcccttgcgcattgtgtgtgtgttttctgtgtgtgtgtgtcctctcctcaGCCCATTGGACATCCAGGCAGTCTAAAACTATCTGGAACAGGGCTGTCTAGTTTACAGATAATCTTGTAGATGGATTTCTTCCAGCAGGGGTCACTATCTCTCCCAGTCTGTATCGCCGTGTAGAACTCTCTCAGTGCTAACTCTGCTA

Function

NR:

description
prospero homeobox protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2013992 False 1293 TUCP 0.40 2 60351646 60353034
TU2013993 False 1289 lncRNA 0.40 2 60351646 60353034
TU2013995 False 1216 lncRNA 0.40 2 60351646 60353034
TU2013990 False 325 lncRNA 0.50 2 60352612 60353034
TU2013991 False 287 lncRNA 0.50 2 60352612 60353034
TU2013994 True 402 lncRNA 0.50 2 60352612 60353092

Neighbor

gene id symbol gene type direction distance location
LOC118943030 NA coding upstream 31936 60319603 ~ 60319710 (+)
LOC118942814 LOC106578145 coding upstream 43741 60284625 ~ 60307905 (+)
LOC110500950 LOC106608479 coding upstream 78838 60257181 ~ 60272808 (+)
si:dkey-9k7.3 LOC106608480 coding upstream 118498 60189515 ~ 60233148 (+)
LOC110500788 LOC106608498 coding upstream 222011 60125015 ~ 60129635 (+)
LOC110500797 4f2 coding downstream 260298 60613390 ~ 60629257 (+)
LOC110500798 LOC106608478 coding downstream 279320 60632412 ~ 60654106 (+)
LOC118942965 NA coding downstream 395914 60749006 ~ 60774137 (+)
LOC118942966 NA coding downstream 425467 60778559 ~ 60779842 (+)
LOC118942963 NA coding downstream 449301 60802393 ~ 60803538 (+)
G1758788 NA non-coding upstream 6569 60344422 ~ 60345077 (+)
G1758802 NA non-coding upstream 22392 60317478 ~ 60329254 (+)
G1758782 NA non-coding upstream 36975 60313673 ~ 60314671 (+)
G1758784 NA non-coding upstream 38119 60312231 ~ 60313527 (+)
G1758746 NA non-coding upstream 134669 60216582 ~ 60216977 (+)
G1758786 NA non-coding downstream 5257 60358349 ~ 60359351 (+)
G1759007 NA non-coding downstream 46926 60400018 ~ 60429043 (+)
G1759051 NA non-coding downstream 117554 60470646 ~ 60472386 (+)
G1759050 NA non-coding downstream 120740 60473832 ~ 60482499 (+)
G1759049 NA non-coding downstream 123110 60476202 ~ 60483619 (+)
G1758801 NA other upstream 25026 60322215 ~ 60326620 (+)
G1757578 NA other upstream 1665123 58683137 ~ 58686523 (+)
rwdd rwdd4 other upstream 1941567 58405236 ~ 58411726 (+)
G1756789 NA other upstream 2423402 57926480 ~ 57928244 (+)
G1755570 NA other upstream 3557072 56793731 ~ 56794574 (+)
G1759168 LOC101154678 other downstream 369066 60722158 ~ 60722472 (+)
G1759267 NA other downstream 457110 60810202 ~ 60810620 (+)
G1760504 NA other downstream 2381959 62689513 ~ 62741819 (+)
G1760587 NA other downstream 2458683 62811775 ~ 62814241 (+)

Expression


Co-expression Network