LOC110500950 (LOC106608479)


Basic Information

Item Value
gene id LOC110500950
gene name LOC106608479
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 60257181 ~ 60272808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958313.1
CTGAATAAAGGAAAGGACTAGCCTACCTGTGTCGTGCATGGACCAACCTCTGAATTCACCGTGTTGCGTGGCGCTGAATCGGAATATCAGCAGTCTTACCTGACAAACTCCCGTTACTTTAAGTCGAGGAATTGAACGTAACCTTGGAAGTACGGGGACACCTGAACAAGATAACTCACCTGTAGCGACGTCATTGCTGTTTTTGTGGAGTGTGTGGGCTTGGGGAGAAAAAGAACGGACACGCACAGAGAAGAAAAACGGGATAGAAGACAAACTGCGGAGCTACAAAGTTTGTTGTAGAGGTGGAGAACAGAAAGGAGGGAGGACTGCgggaagaaagagaagggaaCGATCCTTcccgtttttttttttctttcacgaGGGGAAGGTATATTTTTGAAGTACTCTTTTCACCAGTTTACCTGGAGCGTATTGATTCTACAGAAACTTGACCGAAGAGGACAGTTTAACCGTAAAAAAAAACGACCATGCCGCGAGCCTTCCTGGTAAAGAAGGCGAGATACTCGCCCTATAAGCGGAACTGGAGCGAATTGCCAGACGACGAGCGCGGGGACGTATATATACCAGTGTCTGTCTTCCCCGTGCCCTTATTGGAGGAAACTGAAGCCAGTCCAGCAGAGACCGCCCCCCGTCTCGCCACGACAACGCACTACGAATACACCAAATACACACACTCGGTGCGCAGCGTGATGACCCCTACAGCGGAGATGCCCTCGTGCACGGTGCTGGGTCAACCCCAGAGCCCTGGTCGGGAGTTAGAGGTCACGGGGTTAGAGGTGAAGAGGAGGGCACAGAGCAGCACCTATGTCCGCTCCAAAATCAAGgtGACTACAGGTGAGCTACCCAGTCAGATTCCAATACCTCCCCAGCCTTCCATCCCCGAAATCACCACCACACCTGTTTCCTTGACGACGTCCCCTACTGCCCTGGTCTCCACAGTAACGAAGTCAGGGACAGGTGCTCAGGCGTCGTTTGTGTGCAAGATGTGTCAGAAGGTGTTCCAGTACCAGAGGATGTTGAACCGACACCTGAAGTGTCACAGTGATACTAAGAGACACCTGTGTAACCACTGTGGTAAAGGATTTAACGACACCTTCGACCTGAAGAGACacgtcagaacacacacaggaGTGCGTCCCTACAAGTGCTCTCTGTGTGACAAGGCCTTCACCCAGCGCTGCTCTCTAGAGTCTCACATGAAGAAGATCCACGGTGTGACCCTGCAGTACGCCTATAAAGAGAGACGCAACAAACTCTACGTCTGCGAGGAGTGTGGCCACACCGCCCCTTCCCAGGATACACTGCTCAAACACTACCACGCCCTCCATCCCAACTCCGCCTTCCTGAGGGGGAAGGGGCTGAAAGGGGGGAGAGGGGCAGAGGGGGAGGAGTCGATGCCTGGGTCGCCGCTTTCGAATGATCAGGATAGTGATGATACTACAGGGTCTGGGGTGCAGTAGAAAGAAGGGGctgaaggagaggggaagggcaGGAACACAACGGTTGTCTTGGTCGAAACTGTCGTCGGGTAAATCTGAAACGTTAAGGGAACGTCCATTTTAAATATGAGACCTGTTGAGATTAGGATTGAGATTATGCCCAGTTTGAGATTATTCTGGCTTTCACCTGGAACTCTCCAACCGATGTAGATTATCtgtacaaaaaaaacacacaaaaaaacacaactcTATATATTCAGTAAAGGGATtaatatatttaaatatgtaCTTTGCTATGAATTTATACAGTGTGTTTTAATGCTATTATGCATTTGATTGATGAAAATAACCAATGTTTGTTTTGGGGTTTACACTCCTGAAAGTTCCAAATGGTGGTTTATAGGAAATCTTTTGCACAACTACGGTACACTGTAGTACTACTGTAACATGTTGTATCTACTGCAATACCAAGGTTGGCCTCAATTCCTTTTCAATTACAGTCAATAACTGtacaattgaaatggaattgacccctaACCCTTGTCTtatacaactgtaacgactgttGATAGAAAGAGATTGTGAAACAAAGTGCTGGTCATGTTTACATTCATATCCAATAGGACTTGGAAAGGATCCAACTTCTACAGAAGAGATTACTACTTGCATACTGGAAAAGCACAGTGAGATtattctagcctggtcccaggtctgtttgtccTATATAGCCATCTCCCCTccactatagcctggtcccaggtctgtttgtgccgTATAGCCATCTCCCCTccactatagcctggtcccagatctgtttgtgctatataGCCAAACCATTccactatagcctggtcccaggtctgtttgccCTATATAGCCATCTCCCCTccactatagcctggtcccaggtctgtttgtgctataTGGCCATCTCCACTccactatagcctggtcccaggtctgtttgtgctgtatagccatCTCCCCTccactatagcctggtcccagatctgtt
>XM_036958311.1
CTGAATAAAGGAAAGGACTAGCCTACCTGTGTCGTGCATGGACCAACCTCTGAATTCACCGTGTTGCGTGGCGCTGAATCGGAATATCAGCAGTCTTACCTGACAAACTCCCGTTACTTTAAGTCGAGGAATTGAACGTAACCTTGGAAGTACGGGGACACCTGAACAAGATAACTCACCTGTAGCGACGTCATTGCTGTTTTTGTGGAGTGTGTGGGCTTGGGGAGAAAAAGAACGGACACGCACAGAGAAGAAAAACGGGATAGAAGACAAACTGCGGAGCTACAAAGTTTGTTGTAGAGGTGGAGAACAGAAAGGAGGGAGGACTGCgggaagaaagagaagggaaCGATCCTTcccgtttttttttttctttcacgaGGGGAAGGTATATTTTTGAAGTACTCTTTTCACCAGTTTACCTGGAGCGTATTGATTCTACAGAAACTTGACCGAAGAGGACAGTTTAACCGTAAAAAAAAACGACCATGCCGCGAGCCTTCCTGGTAAAGAAGGCGAGATACTCGCCCTATAAGCGGAACTGGAGCGAATTGCCAGACGACGAGCGCGGGGACGTATATATACCAGTGTCTGTCTTCCCCGTGCCCTTATTGGAGGAAACTGAAGCCAGTCCAGCAGAGACCGCCCCCCGTCTCGCCACGACAACGCACTACGAATACACCAAATACACACACTCGGTGCGCAGCGTGATGACCCCTACAGCGGAGATGCCCTCGTGCACGGTGCTGGGTCAACCCCAGAGCCCTGGTCGGGAGTTAGAGGTCACGGGGTTAGAGGTGAAGAGGAGGGCACAGAGCAGCACCTATGTCCGCTCCAAAATCAAGgtGACTACAGGTGAGCTACCCAGTCAGATTCCAATACCTCCCCAGCCTTCCATCCCCGAAATCACCACCACACCTGTTTCCTTGACGACGTCCCCTACTGCCCTGGTCTCCACAGTAACGAAGTCAGGGACAGGTGCTCAGGCGTCGTTTGTGTGCAAGATGTGTCAGAAGGTGTTCCAGTACCAGAGGATGTTGAACCGACACCTGAAGTGTCACAGTGATACTAAGAGACACCTGTGTAACCACTGTGGTAAAGGATTTAACGACACCTTCGACCTGAAGAGACacgtcagaacacacacaggaGTGCGTCCCTACAAGTGCTCTCTGTGTGACAAGGCCTTCACCCAGCGCTGCTCTCTAGAGTCTCACATGAAGAAGATCCACGGTGTGACCCTGCAGTACGCCTATAAAGAGAGACGCAACAAACTCTACGTCTGCGAGGAGTGTGGCCACACCGCCCCTTCCCAGGATACACTGCTCAAACACTACCACGCCCTCCATCCCAACTCCGCCTTCCTGAGGGGGAAGGGGCTGAAAGGGGGGAGAGGGGCAGAGGGGGAGGAGTCGATGCCTGGGTCGCCGCTTTCGAATGATCAGGATAGTGATGATACTACAGGGTCTGGGGTGCAGTAGAAAGAAGGGGctgaaggagaggggaagggcaGGAACACAACGGTTGTCTTGGTCGAAACTGTCGTCGGGTAAATCTGAAACGTTAAGGGAACGTCCATTTTAAATATGAGACCTGTTGAGATTAGGATTGAGATTATGCCCAGTTTGAGATTATTCTGGCTTTCACCTGGAACTCTCCAACCGATGTAGATTATCtgtacaaaaaaaacacacaaaaaaacacaactcTATATATTCAGTAAAGGGATtaatatatttaaatatgtaCTTTGCTATGAATTTATACAGTGTGTTTTAATGCTATTATGCATTTGATTGATGAAAATAACCAATGTTTGTTTTGGGGTTTACACTCCTGAAAGTTCCAAATGGTGGTTTATAGGAAATCTTTTGCACAACTACGGTACACTGTAGTACTACTGTAACATGTTGTATCTACTGCAATACCAAGGTTGGCCTCAATTCCTTTTCAATTACAGTCAATAACTGtacaattgaaatggaattgacccctaACCCTTGTCTtatacaactgtaacgactgttGATAGAAAGAGATTGTGAAACAAAGTGCTGGTCATGTTTACATTCATATCCAATAGGACTTGGAAAGGATCCAACTTCTACAGAAGAGATTACTACTTGCATACTGGAAAAGCACAGTGAGATtattctagcctggtcccaggtctgtttgtccTATATAGCCATCTCCCCTccactatagcctggtcccaggtctgtttgtgccgTATAGCCATCTCCCCTccactatagcctggtcccaggtctgtttgtgccgTATAGCCATCTCCCCTCCACTAtagcttggtcccagatctgtttgtgctatataGCCAAACCATTccactatagcctggtcccaggtctgtttgtgttgcatAGCCATCTCCCCTccactatagcctggtcccaggtctgtttgtccTATATAGCCATCTCCCCTccactatagcctggtcccaggtctgtttgtgctataTAGCCATCTCCACTccactatagcctggtcccagatctgtttgtgctatacAGCCATCTCCTGTGGTGTTTGACAAGACTAAATCCATAGAATTGGCCTAGACAATACACAGATCTGGTACCAGGCCTAAGATTGTATAGGATTTACATACTGATTCTCAGGTTAGAATACACTCCACTATATAATGCTGTTGGTTTTGATATGTTTTCTTTTAGTGGGGTTAATGTATAGAAACATTTATTATCCTTTTCATATCAATGTGTTTGAACTTGTTCTGGttgttttcatatattttttttcctaTAAAAGtgttttttgttattgtttttgagTGTGATTTCGGGCACTTGATTCTTGgccagtgtatgtgtgtatactgtataagTGCCTGACTACTCATAAGGGAAAGGCAACCAAAAGGGTACAGAATATATacactgaaatatatatataaagaggTTTTTCTATTTATGAACAGGTGTTTGAATGATTACTATATTAATGGGGTGAATGTTTTctgtgaatattttttttttttttttttttacaatcattCTAATGTGACTTgtatcaaattgtattttattaTATGTATCAGAACTCGGAAACTCGGAAATTTCCAACTTGGAAACTCGTTGTAGAAAAATTAGGTCCAATTTTTGGTTCCACTAGGAAAGTATCATAATCAACCAATTGGAAGcgctaattaaaaaaaaaaaaaaaaaacgtatgcaAATTTGAACTCTTGAGGTTCTGATTTTCCGAGTTGTCTTGAATGCGGCATTTCAAAGACTTTCTTCCCTTGTTGCCAATTTGACTTGTTTAAGGTCTTGTTTTCCTGGTGTGTTTGATGGGTATGTTTGATGGGTGTGGTGGGTTGTGGATGCTGCTGTATATTCAGTGACTCTTACTTTGACAATCATGGTGAGGTTGGTTGTTGCTCAATATTAAATCTGTTTCCTG
>XM_036958312.1
CTGAATAAAGGAAAGGACTAGCCTACCTGTGTCGTGCATGGACCAACCTCTGAATTCACCGTGTTGCGTGGCGCTGAATCGGAATATCAGCAGTCTTACCTGACAAACTCCCGTTACTTTAAGTCGAGGAATTGAACGTAACCTTGGAAGTACGGGGACACCTGAACAAGATAACTCACCTGTAGCGACGTCATTGCTGTTTTTGTGGAGTGTGTGGGCTTGGGGAGAAAAAGAACGGACACGCACAGAGAAGAAAAACGGGATAGAAGACAAACTGCGGAGCTACAAAGTTTGTTGTAGAGGTGGAGAACAGAAAGGAGGGAGGACTGCgggaagaaagagaagggaaCGATCCTTcccgtttttttttttctttcacgaGGGGAAGGTATATTTTTGAAGTACTCTTTTCACCAGTTTACCTGGAGCGTATTGATTCTACAGAAACTTGACCGAAGAGGACAGTTTAACCGTAAAAAAAAACGACCATGCCGCGAGCCTTCCTGGTAAAGAAGGCGAGATACTCGCCCTATAAGCGGAACTGGAGCGAATTGCCAGACGACGAGCGCGGGGACGTATATATACCAGTGTCTGTCTTCCCCGTGCCCTTATTGGAGGAAACTGAAGCCAGTCCAGCAGAGACCGCCCCCCGTCTCGCCACGACAACGCACTACGAATACACCAAATACACACACTCGGTGCGCAGCGTGATGACCCCTACAGCGGAGATGCCCTCGTGCACGGTGCTGGGTCAACCCCAGAGCCCTGGTCGGGAGTTAGAGGTCACGGGGTTAGAGGTGAAGAGGAGGGCACAGAGCAGCACCTATGTCCGCTCCAAAATCAAGgtGACTACAGGTGAGCTACCCAGTCAGATTCCAATACCTCCCCAGCCTTCCATCCCCGAAATCACCACCACACCTGTTTCCTTGACGACGTCCCCTACTGCCCTGGTCTCCACAGTAACGAAGTCAGGGACAGGTGCTCAGGCGTCGTTTGTGTGCAAGATGTGTCAGAAGGTGTTCCAGTACCAGAGGATGTTGAACCGACACCTGAAGTGTCACAGTGATACTAAGAGACACCTGTGTAACCACTGTGGTAAAGGATTTAACGACACCTTCGACCTGAAGAGACacgtcagaacacacacaggaGTGCGTCCCTACAAGTGCTCTCTGTGTGACAAGGCCTTCACCCAGCGCTGCTCTCTAGAGTCTCACATGAAGAAGATCCACGGTGTGACCCTGCAGTACGCCTATAAAGAGAGACGCAACAAACTCTACGTCTGCGAGGAGTGTGGCCACACCGCCCCTTCCCAGGATACACTGCTCAAACACTACCACGCCCTCCATCCCAACTCCGCCTTCCTGAGGGGGAAGGGGCTGAAAGGGGGGAGAGGGGCAGAGGGGGAGGAGTCGATGCCTGGGTCGCCGCTTTCGAATGATCAGGATAGTGATGATACTACAGGGTCTGGGGTGCAGTAGAAAGAAGGGGctgaaggagaggggaagggcaGGAACACAACGGTTGTCTTGGTCGAAACTGTCGTCGGGTAAATCTGAAACGTTAAGGGAACGTCCATTTTAAATATGAGACCTGTTGAGATTAGGATTGAGATTATGCCCAGTTTGAGATTATTCTGGCTTTCACCTGGAACTCTCCAACCGATGTAGATTATCtgtacaaaaaaaacacacaaaaaaacacaactcTATATATTCAGTAAAGGGATtaatatatttaaatatgtaCTTTGCTATGAATTTATACAGTGTGTTTTAATGCTATTATGCATTTGATTGATGAAAATAACCAATGTTTGTTTTGGGGTTTACACTCCTGAAAGTTCCAAATGGTGGTTTATAGGAAATCTTTTGCACAACTACGGTACACTGTAGTACTACTGTAACATGTTGTATCTACTGCAATACCAAGGTTGGCCTCAATTCCTTTTCAATTACAGTCAATAACTGtacaattgaaatggaattgacccctaACCCTTGTCTtatacaactgtaacgactgttGATAGAAAGAGATTGTGAAACAAAGTGCTGGTCATGTTTACATTCATATCCAATAGGACTTGGAAAGGATCCAACTTCTACAGAAGAGATTACTACTTGCATACTGGAAAAGCACAGTGAGATtattctagcctggtcccaggtctgtttgtccTATATAGCCATCTCCCCTccactatagcctggtcccaggtctgtttgtgccgTATAGCCATCTCCCCTccactatagcctggtcccaggtctgtttgtgccgTATAGCCATCTCCCCTCCACTAtagcttggtcccagatctgtttgtgctatataGCCAAACCATTccactatagcctggtcccaggtctgtttgtccTATATAGCCATCTCCCCTccactatagcctggtcccaggtctgtttgtgctataTAGCCATCTCCACTccactatagcctggtcccagatctgtttgtgctatacAGCCATCTCCTGTGGTGTTTGACAAGACTAAATCCATAGAATTGGCCTAGACAATACACAGATCTGGTACCAGGCCTAAGATTGTATAGGATTTACATACTGATTCTCAGGTTAGAATACACTCCACTATATAATGCTGTTGGTTTTGATATGTTTTCTTTTAGTGGGGTTAATGTATAGAAACATTTATTATCCTTTTCATATCAATGTGTTTGAACTTGTTCTGGttgttttcatatattttttttcctaTAAAAGtgttttttgttattgtttttgagTGTGATTTCGGGCACTTGATTCTTGgccagtgtatgtgtgtatactgtataagTGCCTGACTACTCATAAGGGAAAGGCAACCAAAAGGGTACAGAATATATacactgaaatatatatataaagaggTTTTTCTATTTATGAACAGGTGTTTGAATGATTACTATATTAATGGGGTGAATGTTTTctgtgaatattttttttttttttttttttacaatcattCTAATGTGACTTgtatcaaattgtattttattaTATGTATCAGAACTCGGAAACTCGGAAATTTCCAACTTGGAAACTCGTTGTAGAAAAATTAGGTCCAATTTTTGGTTCCACTAGGAAAGTATCATAATCAACCAATTGGAAGcgctaattaaaaaaaaaaaaaaaaaacgtatgcaAATTTGAACTCTTGAGGTTCTGATTTTCCGAGTTGTCTTGAATGCGGCATTTCAAAGACTTTCTTCCCTTGTTGCCAATTTGACTTGTTTAAGGTCTTGTTTTCCTGGTGTGTTTGATGGGTATGTTTGATGGGTGTGGTGGGTTGTGGATGCTGCTGTATATTCAGTGACTCTTACTTTGACAATCATGGTGAGGTTGGTTGTTGCTCAATATTAAATCTGTTTCCTG

Function

NR:

description
PREDICTED: putative transcription factor Ovo-like 1

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG:

id description
K09216 OVOL; ovo

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958313.1 False 2475 mRNA 0.48 7 60257181 60271687
XM_036958311.1 False 3447 mRNA 0.44 7 60257181 60272808
XM_036958312.1 True 3397 mRNA 0.44 7 60257181 60272808

Neighbor

gene id symbol gene type direction distance location
si:dkey-9k7.3 LOC106608480 coding upstream 24033 60189515 ~ 60233148 (+)
LOC110500788 LOC106608498 coding upstream 127546 60125015 ~ 60129635 (+)
LOC118942961 LOC106608493 coding upstream 146807 60089893 ~ 60110374 (+)
LOC118942813 LOC106608496 coding upstream 167031 60086040 ~ 60090150 (+)
LOC110500904 NA coding upstream 174143 60005761 ~ 60123961 (+)
LOC118942814 LOC106578145 coding downstream 11817 60284625 ~ 60307905 (+)
LOC118943030 NA coding downstream 46795 60319603 ~ 60319710 (+)
LOC110500797 4f2 coding downstream 340582 60613390 ~ 60629257 (+)
LOC110500798 LOC106608478 coding downstream 359604 60632412 ~ 60654106 (+)
LOC118942965 NA coding downstream 476198 60749006 ~ 60774137 (+)
G1758746 NA non-coding upstream 40204 60216582 ~ 60216977 (+)
G1758666 NA non-coding upstream 69564 60130890 ~ 60187617 (+)
LOC110500789 LOC106608496 non-coding upstream 201744 60036086 ~ 60055603 (+)
G1758673 NA non-coding upstream 235890 60016248 ~ 60021291 (+)
G1758784 NA non-coding downstream 39423 60312231 ~ 60313527 (+)
G1758782 NA non-coding downstream 40865 60313673 ~ 60314671 (+)
G1758802 NA non-coding downstream 44670 60317478 ~ 60329254 (+)
G1758788 NA non-coding downstream 71614 60344422 ~ 60345077 (+)
G1758818 NA non-coding downstream 78838 60351646 ~ 60353092 (+)
G1757578 NA other upstream 1570658 58683137 ~ 58686523 (+)
rwdd rwdd4 other upstream 1847102 58405236 ~ 58411726 (+)
G1756789 NA other upstream 2328937 57926480 ~ 57928244 (+)
G1755570 NA other upstream 3462607 56793731 ~ 56794574 (+)
G1755158 NA other upstream 3869559 56386407 ~ 56387622 (+)
G1758801 NA other downstream 49407 60322215 ~ 60326620 (+)
G1758786 NA other downstream 86022 60358349 ~ 60359351 (+)
G1759168 LOC101154678 other downstream 449350 60722158 ~ 60722472 (+)
G1759267 NA other downstream 537394 60810202 ~ 60810620 (+)

Expression


Co-expression Network